Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

30816736 .. 30817713

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG189000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGGACCCCATCTTTTCCTTCCTCCTCCTCCTTCTCTACTTCATTGTCCACCCCTGCCCCACCACTGTCCCAATCAAGAACAGCCACATCTTCATCTCCGGTGGTTTTAGCGGCATCGGCCTCGCCCTGGCCCAGCGTGCCGCCTCTGAGGGCGCTAAAGTCTTCATCCTTGTGCACTCTCTTGACAAGCTTGAGGAGGCCAAGAAGTACATCCAGCTCTCCACAGGCATCGACGTCACTGTCTTCACCGCCGACGTGCGTGACTACGAAGCAGTTTCAACAGCTATCGCGGCGGCGGGCCTGATCGACGTGTTGGTCATCAACCAGGGAGTGTTTATGGCCGAGGAGTTAGAGAAGCAGGGATTGGATAAGGTCAAGTTCATGGTGGATGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTACTTTGCCGGGAATGAAAGACATGAAGGAACGTGGACCGGAAACTAAGAAGTGGCCGCAGCTAACCAGCATTGTCGTGGAATCCTCTGGTGCAATGAAAGTTAAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCTGGGTTGTCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

213

Amino Acids

22.97

Weight (kDa)

5.95

Isoelectric Point (pI)

17.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	30 - 151	1.9e-21	short chain dehydrogenase
KR	PF08659	31 - 144	6.2e-07	KR domain
adh_short_C2	PF13561	38 - 150	1.8e-13	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	242, 317
AatII	GACGTC	1 cut(s)	240
AccII	CGCG	1 cut(s)	293
AciI	CCGC	7 cut(s)	114, 144, 252, 293, 296, 299, 485
AcoI	YGGCCR	2 cut(s)	342, 482
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	130, 627
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	3 cut(s)	282, 415, 599
AjiI	CACGTC	2 cut(s)	259, 313
AjnI	CCWGG	2 cut(s)	129, 327
AjuI	GAANNNNNNNTTGG	4 cut(s)	350, 382, 536, 568
AluBI	AGCT	7 cut(s)	193, 220, 287, 411, 428, 490, 551
AluI	AGCT	7 cut(s)	193, 220, 287, 411, 428, 490, 551
Alw21I	GWGCWC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	176
AoxI	GGCC	6 cut(s)	121, 132, 201, 301, 342, 482
ApaLI	GTGCAC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	487
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	4 cut(s)	7, 133, 301, 464
AsuC2I	CCSGG	1 cut(s)	438
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	7, 464
BaeGI	GKGCMC	1 cut(s)	180
BbsI	GAAGAC	2 cut(s)	157, 238
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	3 cut(s)	20, 397, 551
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	2 cut(s)	131, 329
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	6 cut(s)	115, 144, 294, 297, 485, 488
BlsI	GCNGC	6 cut(s)	116, 145, 295, 298, 486, 489
Bme1390I	CCNGG	3 cut(s)	131, 329, 438
Bme18I	GGWCC	2 cut(s)	7, 464
BmgBI	CACGTC	2 cut(s)	259, 313
BmgT120I	GGNCC	4 cut(s)	7, 133, 301, 464
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	3 cut(s)	131, 329, 438
BmsI	GCATC	2 cut(s)	126, 240
BpiI	GAAGAC	2 cut(s)	157, 238
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	438
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	3 cut(s)	129, 328, 345
BsaWI	WCCGGW	2 cut(s)	101, 466
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 627
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	131, 329
BseDI	CCNNGG	3 cut(s)	129, 328, 345
BseGI	GGATG	4 cut(s)	168, 213, 397, 562
BseLI	CCNNNNNNNGG	2 cut(s)	130, 627
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	141
BseRI	GAGGAG	4 cut(s)	17, 20, 212, 362
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	2 cut(s)	135, 626
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	3 cut(s)	102, 437, 467
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	2 cut(s)	130, 627
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	306, 420
BspACI	CCGC	7 cut(s)	114, 144, 252, 293, 296, 299, 485
BspANI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	9
BsrDI	GCAATG	1 cut(s)	528
BssECI	CCNNGG	3 cut(s)	129, 328, 345
BssMI	GATC	2 cut(s)	306, 420
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	2 cut(s)	131, 329
Bst4CI	ACNGT	2 cut(s)	70, 244
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	141, 301
BstDEI	CTNAG	3 cut(s)	150, 474, 639
BstF5I	GGATG	4 cut(s)	168, 213, 397, 562
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	309, 423
BstMBI	GATC	2 cut(s)	306, 420
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 140, 293, 548
BstNI	CCWGG	2 cut(s)	131, 329
BstSCI	CCNGG	3 cut(s)	129, 327, 436
BstSLI	GKGCMC	1 cut(s)	180
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	2 cut(s)	157, 238
BsuRI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
BtrI	CACGTC	2 cut(s)	259, 313
BtsCI	GGATG	4 cut(s)	168, 213, 397, 562
BtsI	GCAGTG	1 cut(s)	621
BtsIMutI	CAGTG	3 cut(s)	66, 240, 621
Cac8I	GCNNGC	2 cut(s)	141, 301
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	4 cut(s)	7, 133, 301, 464
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	3 cut(s)	385, 418, 451
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	3 cut(s)	150, 474, 639
DpnI	GATC	2 cut(s)	308, 422
DpnII	GATC	2 cut(s)	306, 420
DrdI	GACNNNNNNGTC	2 cut(s)	242, 317
DseDI	GACNNNNNNGTC	2 cut(s)	242, 317
EaeI	YGGCCR	2 cut(s)	342, 482
Eco47I	GGWCC	2 cut(s)	7, 464
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	129, 327
FaeI	CATG	3 cut(s)	388, 421, 454
FaiI	YATR	4 cut(s)	341, 386, 419, 452
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	3 cut(s)	384, 417, 450
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	6 cut(s)	115, 144, 294, 297, 485, 488
FokI	GGATG	4 cut(s)	155, 200, 404, 569
Fsp4HI	GCNGC	6 cut(s)	115, 144, 294, 297, 485, 488
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	6 cut(s)	115, 144, 294, 297, 485, 488
GsaI	CCCAGC	2 cut(s)	139, 630
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	6 cut(s)	123, 134, 203, 303, 344, 484
HapII	CCGG	3 cut(s)	102, 437, 467
HhaI	GCGC	1 cut(s)	158
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	388, 421, 454
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HindIII	AAGCTT	2 cut(s)	191, 549
HinfI	GANTC	2 cut(s)	509, 561
HpaII	CCGG	3 cut(s)	102, 437, 467
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	3 cut(s)	52, 178, 464
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	2 cut(s)	79, 185
Hpy8I	GTNNAC	3 cut(s)	52, 178, 464
Hpy99I	CGWCG	3 cut(s)	239, 260, 314
HpyAV	CCTTC	4 cut(s)	31, 44, 448, 593
HpyCH4III	ACNGT	2 cut(s)	70, 244
HpyCH4IV	ACGT	4 cut(s)	237, 258, 312, 460
HpyCH4V	TGCA	3 cut(s)	178, 521, 591
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 140, 293, 548
HpyF3I	CTNAG	3 cut(s)	150, 474, 639
HpySE526I	ACGT	4 cut(s)	237, 258, 312, 460
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	388, 421, 454
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	306, 420
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	2 cut(s)	126, 240
MaeII	ACGT	4 cut(s)	237, 258, 312, 460
MaeIII	GTNAC	2 cut(s)	238, 263
MalI	GATC	2 cut(s)	308, 422
MboI	GATC	2 cut(s)	306, 420
MboII	GAAGA	4 cut(s)	85, 157, 238, 556
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	397
MseI	TTAA	1 cut(s)	531
MslI	CAYNNNNRTG	2 cut(s)	173, 503
MspI	CCGG	3 cut(s)	102, 437, 467
MspR9I	CCNGG	3 cut(s)	131, 329, 438
MvaI	CCWGG	2 cut(s)	131, 329
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	120, 140, 293, 548
NciI	CCSGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	306, 420
NlaIII	CATG	3 cut(s)	388, 421, 454
NlaIV	GGNNCC	1 cut(s)	9
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	2 cut(s)	238, 263
PfeI	GAWTC	2 cut(s)	509, 561
PkrI	GCNGC	6 cut(s)	116, 145, 295, 298, 486, 489
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	2 cut(s)	129, 327
PspFI	CCCAGC	2 cut(s)	135, 626
PspGI	CCWGG	2 cut(s)	129, 327
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	4 cut(s)	7, 133, 301, 464
PspPPI	RGGWCCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	173, 503
SaqAI	TTAA	1 cut(s)	531
SatI	GCNGC	6 cut(s)	115, 144, 294, 297, 485, 488
Sau3AI	GATC	2 cut(s)	306, 420
Sau96I	GGNCC	4 cut(s)	7, 133, 301, 464
ScrFI	CCNGG	3 cut(s)	131, 329, 438
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	2 cut(s)	126, 240
SinI	GGWCC	2 cut(s)	7, 464
SmiMI	CAYNNNNRTG	2 cut(s)	173, 503
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	7 cut(s)	114, 144, 252, 293, 296, 299, 485
StyD4I	CCNGG	3 cut(s)	129, 327, 436
TaaI	ACNGT	2 cut(s)	70, 244
TaiI	ACGT	4 cut(s)	240, 261, 315, 463
TaqI	TCGA	2 cut(s)	234, 309
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	5 cut(s)	117, 146, 296, 299, 487
TfiI	GAWTC	2 cut(s)	509, 561
Tru1I	TTAA	1 cut(s)	531
Tru9I	TTAA	1 cut(s)	531
TscAI	CASTG	3 cut(s)	73, 247, 628
TseFI	GTSAC	2 cut(s)	238, 263
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	2 cut(s)	238, 263
TspDTI	ATGAA	7 cut(s)	34, 85, 157, 373, 458, 467, 539
TspRI	CASTG	3 cut(s)	73, 247, 628
VneI	GTGCAC	1 cut(s)	176
VpaK11BI	GGWCC	2 cut(s)	7, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	502
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.