Rh7AG364400

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
46860311 .. 46861443
1133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG364400.1

Sequence Viewer

Length: 246 bp
ATGAAAGCTGAGGAAGTTGCTAAGAAAGCTTTGGATGGAATCAAGTCTGCGTCTTTTATTGTACCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCCGGGTTGTCGCCTCAGAGATCGTTCATTATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATACGTATTGCTGCCCTGGGTTTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTACCTGA

Protein Analysis

81

Amino Acids

8.87

Weight (kDa)

9.36

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 203, 211
AfaI GTAC 2 cut(s) 63, 241
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 77
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 8, 29
AluI AGCT 2 cut(s) 8, 29
ApeKI GCWGC 2 cut(s) 155, 176
AsuC2I CCSGG 1 cut(s) 106
BaeI ACNNNNGTAYC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 142, 163
BccI CCATC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 1 cut(s) 106
BisI GCNGC 2 cut(s) 156, 177
BlsI GCNGC 2 cut(s) 157, 178
Bme1390I CCNGG 2 cut(s) 106, 182
BmrFI CCNGG 2 cut(s) 106, 182
Bpu10I CCTNAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 180, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 2 cut(s) 180, 181
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 142, 163
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 105
Bsp143I GATC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 180, 181
BssMI GATC 1 cut(s) 122
BssNAI GTATAC 2 cut(s) 204, 212
Bst1107I GTATAC 2 cut(s) 204, 212
Bst2UI CCWGG 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 170
BstDEI CTNAG 3 cut(s) 9, 21, 117
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 125
BstMBI GATC 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 2 cut(s) 104, 180
BstSNI TACGTA 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 142, 163
BstZ17I GTATAC 2 cut(s) 204, 212
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 197
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 62, 240
CviAII CATG 1 cut(s) 224
CviJI RGCY 3 cut(s) 8, 29, 82
CviKI_1 RGCY 3 cut(s) 8, 29, 82
CviQI GTAC 2 cut(s) 62, 240
DdeI CTNAG 3 cut(s) 9, 21, 117
DpnI GATC 1 cut(s) 124
DpnII GATC 1 cut(s) 122
Eco105I TACGTA 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 134, 164, 204, 212, 225
FatI CATG 1 cut(s) 223
FblI GTMKAC 2 cut(s) 203, 211
Fnu4HI GCNGC 2 cut(s) 156, 177
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 156, 177
GluI GCNGC 2 cut(s) 156, 177
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 227
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 204, 212
Hpy188I TCNGA 1 cut(s) 120
Hpy8I GTNNAC 2 cut(s) 204, 212
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 9, 21, 117
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 122
LpnPI CCDG 4 cut(s) 118, 144, 167, 194
Lsp1109I GCAGC 2 cut(s) 142, 163
MaeII ACGT 1 cut(s) 169
MalI GATC 1 cut(s) 124
MboI GATC 1 cut(s) 122
MluCI AATT 1 cut(s) 196
MnlI CCTC 3 cut(s) 4, 126, 139
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 106, 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 1 cut(s) 106
NdeII GATC 1 cut(s) 122
NlaIII CATG 1 cut(s) 227
PasI CCCWGGG 1 cut(s) 181
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 157, 178
Ppu21I YACGTR 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
RsaI GTAC 2 cut(s) 63, 241
RsaNI GTAC 2 cut(s) 62, 240
SatI GCNGC 2 cut(s) 156, 177
Sau3AI GATC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 106, 182
SetI ASST 6 cut(s) 10, 31, 67, 150, 172, 245
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 104, 180
TaiI ACGT 1 cut(s) 172
TasI AATT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 39
TscAI CASTG 2 cut(s) 106, 197
TseI GCWGC 2 cut(s) 155, 176
TspDTI ATGAA 2 cut(s) 17, 118
TspRI CASTG 2 cut(s) 106, 197
XmiI GTMKAC 2 cut(s) 203, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.