Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

35292728 .. 35294757

Gene Structure 2030 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGACCCCAACTTCTCCTTCCTCCTCCTCCTCCCTCTCGCTCTCCTCCTCCTCCTCTACTTCATCGTCCGCCCCCGCCCCACCACCATCCCAATCAAGAACCGCCACGTCTTCATCACCGGCGGTTCCAGCGGCATCGGCCTCGCCCTGGCCCACCTCGCAGCCTCTGAGGGCGCCAAAGTCTCCATCCTCGCACTACCTTTCGACAAGCTTGAGGAGGCCAAGAACTACATCCAGCTCTCCACCGGCATGGACGTCGCAGTCTTCGCCGCCGACGTCCGTGACTACGACGCAGTTTCAAAGGCTGTTGAGGCGGCAGGCCCGATTGATGTGTTGGTAGTCAACCAGGGAGTGTTTGTGGGCAGGGAGTTGGAGAAGCAAGGATTGGATGAGGTCAGGTTCATGCTGGACGTCAATTTGATGGGTAGTTTCAATGTGATCAAAGCTGCTTTGCCGGGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCGATTGCTTTGATGTCGTCTGTGGCCGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCCGCTAGCAAATTTGGCCTTCGGGGTTTGGCTGAAGCTCTACAGCAAGAGGTCATTATAGATGACATTCACGTTTCGCTGATTTTCCCTGCAGCTACTGACACTCCTGGACTCACTAAAGAAGCTAAGACGAGGCCGCAACTTACCAGGACTATAATGGAAACCTATAGTACAATGAAAGCCGAGGCAGTTGCGAAGAAGGCTTTGGATGGAATTAAGTCTGCTTCCTTTATTGTGCCTTGCAACTTTGTAGGGCTTTTGTTGTCCATTGCCACTGCAGGGTTGTCGCCCCAAAGATCATTCATCATGGCATTTGCGGAGGTGGCTGCTGCTGGTATAATACGGATAACTGCTCTGGGATTTCAGTGGAATTGGTATACATATATACACAAGTGGCATGGACAAAACAAAGGACCTAAAGTTCTTGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

329

Amino Acids

35.3

Weight (kDa)

8.99

Isoelectric Point (pI)

22.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 227	2e-42	short chain dehydrogenase
KR	PF08659	38 - 200	8e-10	KR domain
adh_short_C2	PF13561	45 - 238	4.3e-27	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	3 cut(s)	261, 282, 417
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	1 cut(s)	929
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	4 cut(s)	177, 258, 279, 414
AfaI	GTAC	1 cut(s)	724
AfiI	CCNNNNNNNGG	3 cut(s)	151, 487, 831
AgsI	TTSAA	2 cut(s)	303, 436
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	4 cut(s)	150, 348, 658, 698
AjuI	GAANNNNNNNTTGG	5 cut(s)	37, 371, 403, 740, 772
AloI	GAACNNNNNNTCC	1 cut(s)	957
AluBI	AGCT	6 cut(s)	214, 241, 449, 590, 647, 677
AluI	AGCT	6 cut(s)	214, 241, 449, 590, 647, 677
Alw26I	GTCTC	1 cut(s)	190
AlwNI	CAGNNNCTG	2 cut(s)	170, 650
AoxI	GGCC	7 cut(s)	142, 153, 222, 322, 516, 568, 686
ApeKI	GCWGC	5 cut(s)	164, 449, 644, 878, 881
ApoI	RAATTY	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	6 cut(s)	7, 154, 323, 478, 485, 965
AsuC2I	CCSGG	2 cut(s)	459, 489
AsuHPI	GGTGA	1 cut(s)	112
AsuNHI	GCTAGC	1 cut(s)	557
AvaII	GGWCC	4 cut(s)	7, 478, 485, 965
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	106, 259
BbvI	GCAGC	5 cut(s)	176, 436, 656, 865, 868
BccI	CCATC	4 cut(s)	98, 197, 418, 755
BceAI	ACGGC	2 cut(s)	553, 561
BcgI	CGANNNNNNTGC	8 cut(s)	127, 161, 241, 275, 725, 759, 819, 853
BciT130I	CCWGG	4 cut(s)	152, 350, 660, 700
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	459, 489
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	4 cut(s)	593, 642, 718, 828
BfoI	RGCGCY	1 cut(s)	180
BisI	GCNGC	9 cut(s)	136, 165, 273, 318, 450, 645, 689, 879, 882
BlsI	GCNGC	9 cut(s)	137, 166, 274, 319, 451, 646, 690, 880, 883
Bme1390I	CCNGG	6 cut(s)	152, 350, 459, 489, 660, 700
Bme18I	GGWCC	4 cut(s)	7, 478, 485, 965
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	6 cut(s)	7, 154, 323, 478, 485, 965
BmiI	GGNNCC	3 cut(s)	9, 130, 178
BmrFI	CCNGG	6 cut(s)	152, 350, 459, 489, 660, 700
BmsI	GCATC	1 cut(s)	147
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	2 cut(s)	106, 259
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	2 cut(s)	459, 489
BsaHI	GRCGYC	4 cut(s)	177, 258, 279, 414
BsaJI	CCNNGG	4 cut(s)	150, 349, 481, 735
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 640, 670
Bsc4I	CCNNNNNNNGG	3 cut(s)	151, 487, 831
Bse118I	RCCGGY	3 cut(s)	122, 248, 518
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	4 cut(s)	152, 350, 660, 700
BseDI	CCNNGG	4 cut(s)	150, 349, 481, 735
BseGI	GGATG	5 cut(s)	90, 189, 234, 397, 766
BseLI	CCNNNNNNNGG	3 cut(s)	151, 487, 831
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	1 cut(s)	162
BseRI	GAGGAG	8 cut(s)	17, 20, 23, 38, 41, 44, 47, 233
BseXI	GCAGC	5 cut(s)	176, 436, 656, 865, 868
BshFI	GGCC	7 cut(s)	144, 155, 224, 324, 518, 570, 688
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	123, 249, 458, 488, 519
BslI	CCNNNNNNNGG	3 cut(s)	151, 487, 831
BsmAI	GTCTC	1 cut(s)	190
BsnI	GGCC	7 cut(s)	144, 155, 224, 324, 518, 570, 688
Bsp143I	GATC	2 cut(s)	441, 848
BspANI	GGCC	7 cut(s)	144, 155, 224, 324, 518, 570, 688
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	3 cut(s)	9, 130, 178
BspMAI	CTGCAG	2 cut(s)	646, 832
BspOI	GCTAGC	1 cut(s)	561
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	3 cut(s)	122, 248, 518
BssAI	RCCGGY	3 cut(s)	122, 248, 518
BssECI	CCNNGG	4 cut(s)	150, 349, 481, 735
BssMI	GATC	2 cut(s)	441, 848
BssNAI	GTATAC	1 cut(s)	930
BssNI	GRCGYC	4 cut(s)	177, 258, 279, 414
Bst1107I	GTATAC	1 cut(s)	930
Bst2UI	CCWGG	4 cut(s)	152, 350, 660, 700
Bst4CI	ACNGT	1 cut(s)	482
BstACI	GRCGYC	4 cut(s)	177, 258, 279, 414
BstC8I	GCNNGC	2 cut(s)	322, 559
BstDEI	CTNAG	2 cut(s)	171, 678
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	5 cut(s)	90, 189, 234, 397, 766
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	2 cut(s)	444, 851
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	2 cut(s)	441, 848
BstMWI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 269, 314, 554, 567, 752, 875
BstNI	CCWGG	4 cut(s)	152, 350, 660, 700
BstSCI	CCNGG	6 cut(s)	150, 348, 457, 487, 658, 698
BstSFI	CTRYAG	4 cut(s)	593, 642, 718, 828
BstV1I	GCAGC	5 cut(s)	176, 436, 656, 865, 868
BstV2I	GAAGAC	2 cut(s)	106, 259
BstXI	CCANNNNNNTGG	1 cut(s)	253
BstZ17I	GTATAC	1 cut(s)	930
BsuRI	GGCC	7 cut(s)	144, 155, 224, 324, 518, 570, 688
BtgI	CCRYGG	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	5 cut(s)	90, 189, 234, 397, 766
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	2 cut(s)	825, 923
Cac8I	GCNNGC	2 cut(s)	322, 559
CaiI	CAGNNNCTG	2 cut(s)	170, 650
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	3 cut(s)	122, 248, 518
Cfr13I	GGNCC	6 cut(s)	7, 154, 323, 478, 485, 965
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	723
CviAII	CATG	5 cut(s)	253, 406, 859, 950, 984
CviQI	GTAC	1 cut(s)	723
DdeI	CTNAG	2 cut(s)	171, 678
DinI	GGCGCC	1 cut(s)	178
DpnI	GATC	2 cut(s)	443, 850
DpnII	GATC	2 cut(s)	441, 848
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	1 cut(s)	516
EciI	GGCGGA	2 cut(s)	20, 62
Eco47I	GGWCC	4 cut(s)	7, 478, 485, 965
Eco57I	CTGAAG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	965
EcoRII	CCWGG	4 cut(s)	150, 348, 658, 698
EgeI	GGCGCC	1 cut(s)	178
EheI	GGCGCC	1 cut(s)	178
FaeI	CATG	5 cut(s)	256, 409, 862, 953, 987
FatI	CATG	5 cut(s)	252, 405, 858, 949, 983
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	929
Fnu4HI	GCNGC	9 cut(s)	136, 165, 273, 318, 450, 645, 689, 879, 882
FokI	GGATG	5 cut(s)	77, 176, 221, 404, 773
Fsp4HI	GCNGC	9 cut(s)	136, 165, 273, 318, 450, 645, 689, 879, 882
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	9 cut(s)	136, 165, 273, 318, 450, 645, 689, 879, 882
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	7 cut(s)	144, 155, 224, 324, 518, 570, 688
HapII	CCGG	5 cut(s)	123, 249, 458, 488, 519
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	179
Hin1I	GRCGYC	4 cut(s)	177, 258, 279, 414
Hin1II	CATG	5 cut(s)	256, 409, 862, 953, 987
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	1 cut(s)	663
HpaII	CCGG	5 cut(s)	123, 249, 458, 488, 519
HphI	GGTGA	1 cut(s)	112
Hpy166II	GTNNAC	3 cut(s)	346, 485, 930
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	3 cut(s)	346, 485, 930
Hpy99I	CGWCG	3 cut(s)	263, 281, 296
HpyAV	CCTTC	4 cut(s)	31, 469, 581, 745
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	5 cut(s)	111, 258, 279, 414, 624
HpyCH4V	TGCA	4 cut(s)	644, 795, 830, 983
HpyF10VI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 269, 314, 554, 567, 752, 875
HpyF3I	CTNAG	2 cut(s)	171, 678
HpySE526I	ACGT	5 cut(s)	111, 258, 279, 414, 624
Hsp92I	GRCGYC	4 cut(s)	177, 258, 279, 414
Hsp92II	CATG	5 cut(s)	256, 409, 862, 953, 987
HspAI	GCGC	1 cut(s)	177
KasI	GGCGCC	1 cut(s)	176
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	441, 848
Lsp1109I	GCAGC	5 cut(s)	176, 436, 656, 865, 868
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	5 cut(s)	111, 258, 279, 414, 624
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	443, 850
MboI	GATC	2 cut(s)	441, 848
MboII	GAAGA	3 cut(s)	106, 259, 760
MluCI	AATT	4 cut(s)	418, 563, 765, 922
Mly113I	GGCGCC	1 cut(s)	177
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	1 cut(s)	354
MseI	TTAA	1 cut(s)	768
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	5 cut(s)	123, 249, 458, 488, 519
MspR9I	CCNGG	6 cut(s)	152, 350, 459, 489, 660, 700
MvaI	CCWGG	4 cut(s)	152, 350, 660, 700
MwoI	GCNNNNNNNGC	9 cut(s)	132, 141, 161, 269, 314, 554, 567, 752, 875
NarI	GGCGCC	1 cut(s)	177
NciI	CCSGG	2 cut(s)	459, 489
NdeII	GATC	2 cut(s)	441, 848
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	5 cut(s)	256, 409, 862, 953, 987
NlaIV	GGNNCC	3 cut(s)	9, 130, 178
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	9 cut(s)	137, 166, 274, 319, 451, 646, 690, 880, 883
PleI	GAGTC	1 cut(s)	657
PluTI	GGCGCC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	965
Psp5II	RGGWCCY	1 cut(s)	965
Psp6I	CCWGG	4 cut(s)	150, 348, 658, 698
PspGI	CCWGG	4 cut(s)	150, 348, 658, 698
PspN4I	GGNNCC	3 cut(s)	9, 130, 178
PspPI	GGNCC	6 cut(s)	7, 154, 323, 478, 485, 965
PspPPI	RGGWCCY	1 cut(s)	965
PstI	CTGCAG	2 cut(s)	646, 832
PstNI	CAGNNNCTG	2 cut(s)	170, 650
RsaI	GTAC	1 cut(s)	724
RsaNI	GTAC	1 cut(s)	723
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	768
SatI	GCNGC	9 cut(s)	136, 165, 273, 318, 450, 645, 689, 879, 882
Sau3AI	GATC	2 cut(s)	441, 848
Sau96I	GGNCC	6 cut(s)	7, 154, 323, 478, 485, 965
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	6 cut(s)	152, 350, 459, 489, 660, 700
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	4 cut(s)	593, 642, 718, 828
SfoI	GGCGCC	1 cut(s)	178
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	4 cut(s)	7, 478, 485, 965
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	418, 563, 765, 922
SspDI	GGCGCC	1 cut(s)	176
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	6 cut(s)	150, 348, 457, 487, 658, 698
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	5 cut(s)	114, 261, 282, 417, 627
TaqI	TCGA	2 cut(s)	207, 494
TasI	AATT	4 cut(s)	418, 563, 765, 922
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	4 cut(s)	138, 275, 320, 691
Tru1I	TTAA	1 cut(s)	768
Tru9I	TTAA	1 cut(s)	768
TscAI	CASTG	2 cut(s)	832, 923
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	5 cut(s)	164, 449, 644, 878, 881
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	6 cut(s)	55, 106, 394, 479, 743, 844
TspGWI	ACGGA	2 cut(s)	272, 910
TspRI	CASTG	2 cut(s)	832, 923
VpaK11BI	GGWCC	4 cut(s)	7, 478, 485, 965
XapI	RAATTY	1 cut(s)	563
XcmI	CCANNNNNNNNNTGG	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	929
XspI	CTAG	1 cut(s)	558
ZraI	GACGTC	3 cut(s)	259, 280, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.