Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

31977462 .. 31980097

Gene Structure 2636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCGGACCCCAACTTCTCCTTCCTCCTCCTCCTCCCTCTTGCTCTCCTCCTCCTCCTCTACTTCATTGTCCGCCCCCGCCCCACCACCGTCCCAATCAAGAACCGCCACATCTTCATCACCGGCGGTTCCAGTGGCATTGGCCTAGCCCTAGCCCACCTTGCCGCCTCTGAGGGTGCCAAAGTCTCCATCCTTGCGCTACCTGACGACAAGCTCGAGGAGGCCAAGAACTACATCCAACTCTCCAGCGGCATCGACATCGCTGTCTTCGCCGCCGATGTCCGTGACTACGACGCAATTTCTAAGGTTGTCGAAGTGGCTGGCCCGATCGATGTGTTGATCGTCAACCAGGGAGTTTTTGTGGCTAAGGAGTTGGAGAAGCAGGGATTGGATGAGGTTAGGTTCATGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTACCGGGAATGAAAGACAGGAAGGACCGTGGACCGGGTTCAATTGCTCTGATGTCGTCTCAGGCCGGTCAGGTTGGGATTTACGGCTACACGGCTTATTCCGCAAGCAAATTTGGGCTTCGGGGTTTGGCTGAAGCTTTGCAGCAAGAGGTCATTGTAGACGATATTCACGTTTCGCTGATTTTCCCTCCAGCTACTGACACTCCTGGACTCACTAAAGAAACTAAGACGAGGCCGCAACTTACCAGCACTATAGTCGAAACCTCTGGTATAATGAAAGCCGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCCTTTATTGTGCCTTGTAACTTTGTAGGGCTTTTGTTATCCATTGCTAGTGCTGGGTTGTCACCCAACAGATCATTCAACATGGCATTTATGGAGGTGGTTTCTGGTGGTATAATACGGATAGTTGCTTTGGGATTTCAGTGGAATTGGTATACAAGTATACTCAAGTGGCATGGACAAAAACAAAGGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

323

Amino Acids

34.84

Weight (kDa)

7.78

Isoelectric Point (pI)

24.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	37 - 227	8.8e-43	short chain dehydrogenase
KR	PF08659	39 - 200	3.7e-09	KR domain
adh_short_C2	PF13561	45 - 249	4.6e-27	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AatII	GACGTC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	3 cut(s)	612, 929, 937
AcsI	RAATTY	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	487
AgsI	TTSAA	3 cut(s)	436, 495, 856
AjnI	CCWGG	2 cut(s)	348, 658
AjuI	GAANNNNNNNTTGG	7 cut(s)	37, 371, 403, 740, 772, 836, 868
AluBI	AGCT	6 cut(s)	214, 432, 449, 590, 647, 755
AluI	AGCT	6 cut(s)	214, 432, 449, 590, 647, 755
Alw26I	GTCTC	2 cut(s)	190, 516
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	215
AoxI	GGCC	5 cut(s)	142, 222, 322, 516, 686
ApeKI	GCWGC	2 cut(s)	449, 595
ApoI	RAATTY	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	5 cut(s)	7, 323, 478, 485, 966
AsuC2I	CCSGG	2 cut(s)	459, 489
AsuHPI	GGTGA	2 cut(s)	112, 831
AvaI	CYCGRG	1 cut(s)	215
AvaII	GGWCC	4 cut(s)	7, 478, 485, 966
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	436, 607
BccI	CCATC	3 cut(s)	197, 418, 755
BceAI	ACGGC	2 cut(s)	553, 561
BcgI	CGANNNNNNTGC	6 cut(s)	241, 275, 691, 725, 725, 759
BciT130I	CCWGG	2 cut(s)	350, 660
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	2 cut(s)	459, 489
BcoDI	GTCTC	2 cut(s)	190, 516
BfaI	CTAG	3 cut(s)	146, 152, 825
BfmI	CTRYAG	1 cut(s)	705
BisI	GCNGC	6 cut(s)	165, 250, 273, 450, 596, 689
BlsI	GCNGC	6 cut(s)	166, 251, 274, 451, 597, 690
Bme1390I	CCNGG	4 cut(s)	350, 459, 489, 660
Bme18I	GGWCC	4 cut(s)	7, 478, 485, 966
BmeT110I	CYCGRG	1 cut(s)	215
BmgT120I	GGNCC	5 cut(s)	7, 323, 478, 485, 966
BmiI	GGNNCC	3 cut(s)	9, 130, 178
BmrFI	CCNGG	4 cut(s)	350, 459, 489, 660
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	2 cut(s)	229, 627
Bpu10I	CCTNAGC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	926
BpuMI	CCSGG	2 cut(s)	459, 489
Bsa29I	ATCGAT	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	349, 481, 735
BsaXI	ACNNNNNCTCC	4 cut(s)	345, 375, 640, 670
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse118I	RCCGGY	2 cut(s)	122, 518
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	819
BseBI	CCWGG	2 cut(s)	350, 660
BseCI	ATCGAT	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	349, 481, 735
BseGI	GGATG	4 cut(s)	189, 234, 397, 766
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	2 cut(s)	162, 527
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	8 cut(s)	17, 20, 23, 38, 41, 44, 47, 233
BseXI	GCAGC	2 cut(s)	436, 607
BseYI	CCCAGC	1 cut(s)	830
Bsh1285I	CGRYCG	1 cut(s)	330
BshFI	GGCC	5 cut(s)	144, 224, 324, 518, 688
BshNI	GGYRCC	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	330
BsiHKCI	CYCGRG	1 cut(s)	215
BsiSI	CCGG	4 cut(s)	123, 458, 488, 519
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	2 cut(s)	190, 516
BsmBI	CGTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	5 cut(s)	144, 224, 324, 518, 688
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	4 cut(s)	327, 339, 441, 848
BspANI	GGCC	5 cut(s)	144, 224, 324, 518, 688
BspCNI	CTCAG	2 cut(s)	163, 526
BspDI	ATCGAT	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	9, 130, 178
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	2 cut(s)	122, 518
BsrI	ACTGG	1 cut(s)	132
BssAI	RCCGGY	2 cut(s)	122, 518
BssECI	CCNNGG	3 cut(s)	349, 481, 735
BssMI	GATC	4 cut(s)	327, 339, 441, 848
BssNAI	GTATAC	2 cut(s)	930, 938
BssNI	GRCGYC	1 cut(s)	414
Bst1107I	GTATAC	2 cut(s)	930, 938
Bst2UI	CCWGG	2 cut(s)	350, 660
Bst4CI	ACNGT	2 cut(s)	91, 482
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	2 cut(s)	322, 559
BstDEI	CTNAG	5 cut(s)	171, 303, 366, 513, 678
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	189, 234, 397, 766
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	330, 342, 444, 851
BstMAI	GTCTC	2 cut(s)	190, 516
BstMBI	GATC	4 cut(s)	327, 339, 441, 848
BstMCI	CGRYCG	1 cut(s)	330
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 269, 554, 752
BstNI	CCWGG	2 cut(s)	350, 660
BstSCI	CCNGG	4 cut(s)	348, 457, 487, 658
BstSFI	CTRYAG	1 cut(s)	705
BstV1I	GCAGC	2 cut(s)	436, 607
BstV2I	GAAGAC	1 cut(s)	259
BstZ17I	GTATAC	2 cut(s)	930, 938
Bsu15I	ATCGAT	1 cut(s)	330
BsuRI	GGCC	5 cut(s)	144, 224, 324, 518, 688
BsuTUI	ATCGAT	1 cut(s)	330
BtgI	CCRYGG	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	189, 234, 397, 766
BtsIMutI	CAGTG	2 cut(s)	139, 923
Cac8I	GCNNGC	2 cut(s)	322, 559
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	2 cut(s)	122, 518
Cfr13I	GGNCC	5 cut(s)	7, 323, 478, 485, 966
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	1 cut(s)	302
CviAII	CATG	4 cut(s)	406, 439, 859, 950
DdeI	CTNAG	5 cut(s)	171, 303, 366, 513, 678
DpnI	GATC	4 cut(s)	329, 341, 443, 850
DpnII	GATC	4 cut(s)	327, 339, 441, 848
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EciI	GGCGGA	2 cut(s)	20, 62
Eco47I	GGWCC	4 cut(s)	7, 478, 485, 966
Eco57I	CTGAAG	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	966
EcoRII	CCWGG	2 cut(s)	348, 658
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	4 cut(s)	409, 442, 862, 953
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	405, 438, 858, 949
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	441
FblI	GTMKAC	3 cut(s)	612, 929, 937
Fnu4HI	GCNGC	6 cut(s)	165, 250, 273, 450, 596, 689
FokI	GGATG	4 cut(s)	176, 221, 404, 773
Fsp4HI	GCNGC	6 cut(s)	165, 250, 273, 450, 596, 689
FspBI	CTAG	3 cut(s)	146, 152, 825
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	6 cut(s)	165, 250, 273, 450, 596, 689
GsaI	CCCAGC	1 cut(s)	834
GsuI	CTGGAG	2 cut(s)	229, 627
HaeIII	GGCC	5 cut(s)	144, 224, 324, 518, 688
HapII	CCGG	4 cut(s)	123, 458, 488, 519
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	4 cut(s)	409, 442, 862, 953
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	2 cut(s)	588, 753
HinfI	GANTC	2 cut(s)	663, 765
HpaII	CCGG	4 cut(s)	123, 458, 488, 519
HphI	GGTGA	2 cut(s)	112, 831
Hpy166II	GTNNAC	6 cut(s)	346, 412, 485, 613, 930, 938
Hpy188I	TCNGA	2 cut(s)	172, 504
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	6 cut(s)	346, 412, 485, 613, 930, 938
Hpy99I	CGWCG	1 cut(s)	296
HpyAV	CCTTC	2 cut(s)	31, 469
HpyCH4III	ACNGT	2 cut(s)	91, 482
HpyCH4IV	ACGT	2 cut(s)	414, 624
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 269, 554, 752
HpyF3I	CTNAG	5 cut(s)	171, 303, 366, 513, 678
HpySE526I	ACGT	2 cut(s)	414, 624
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	4 cut(s)	409, 442, 862, 953
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	4 cut(s)	327, 339, 441, 848
Lsp1109I	GCAGC	2 cut(s)	436, 607
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	3 cut(s)	146, 152, 825
MaeII	ACGT	2 cut(s)	414, 624
MaeIII	GTNAC	3 cut(s)	284, 794, 837
MalI	GATC	4 cut(s)	329, 341, 443, 850
MboI	GATC	4 cut(s)	327, 339, 441, 848
MboII	GAAGA	3 cut(s)	106, 259, 760
MfeI	CAATTG	1 cut(s)	495
MluCI	AATT	5 cut(s)	297, 418, 495, 563, 922
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	2 cut(s)	262, 354
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	4 cut(s)	123, 458, 488, 519
MspR9I	CCNGG	4 cut(s)	350, 459, 489, 660
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	350, 660
MwoI	GCNNNNNNNGC	4 cut(s)	161, 269, 554, 752
NciI	CCSGG	2 cut(s)	459, 489
NdeII	GATC	4 cut(s)	327, 339, 441, 848
NlaIII	CATG	4 cut(s)	409, 442, 862, 953
NlaIV	GGNNCC	3 cut(s)	9, 130, 178
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	284, 837
PaeR7I	CTCGAG	1 cut(s)	215
PcsI	WCGNNNNNNNCGW	2 cut(s)	213, 621
PfeI	GAWTC	1 cut(s)	765
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	6 cut(s)	166, 251, 274, 451, 597, 690
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	1 cut(s)	657
PpsI	GAGTC	1 cut(s)	657
PpuMI	RGGWCCY	1 cut(s)	966
Psp5II	RGGWCCY	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	348, 658
PspFI	CCCAGC	1 cut(s)	830
PspGI	CCWGG	2 cut(s)	348, 658
PspN4I	GGNNCC	3 cut(s)	9, 130, 178
PspPI	GGNCC	5 cut(s)	7, 323, 478, 485, 966
PspPPI	RGGWCCY	1 cut(s)	966
PspXI	VCTCGAGB	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	330
SatI	GCNGC	6 cut(s)	165, 250, 273, 450, 596, 689
Sau3AI	GATC	4 cut(s)	327, 339, 441, 848
Sau96I	GGNCC	5 cut(s)	7, 323, 478, 485, 966
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	4 cut(s)	350, 459, 489, 660
SfaNI	GCATC	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	705
Sfr274I	CTCGAG	1 cut(s)	215
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	4 cut(s)	7, 478, 485, 966
SlaI	CTCGAG	1 cut(s)	215
SmlI	CTYRAG	2 cut(s)	215, 941
SmoI	CTYRAG	2 cut(s)	215, 941
Sse9I	AATT	5 cut(s)	297, 418, 495, 563, 922
SspMI	CTAG	3 cut(s)	146, 152, 825
StyD4I	CCNGG	4 cut(s)	348, 457, 487, 658
TaaI	ACNGT	2 cut(s)	91, 482
TaiI	ACGT	2 cut(s)	417, 627
TaqI	TCGA	5 cut(s)	216, 255, 312, 330, 711
TasI	AATT	5 cut(s)	297, 418, 495, 563, 922
TauI	GCSGC	4 cut(s)	167, 252, 275, 691
TfiI	GAWTC	1 cut(s)	765
TscAI	CASTG	2 cut(s)	139, 923
TseFI	GTSAC	2 cut(s)	284, 837
TseI	GCWGC	2 cut(s)	449, 595
Tsp45I	GTSAC	2 cut(s)	284, 837
TspDTI	ATGAA	5 cut(s)	55, 106, 394, 479, 743
TspGWI	ACGGA	2 cut(s)	272, 910
TspRI	CASTG	2 cut(s)	139, 923
VpaK11BI	GGWCC	4 cut(s)	7, 478, 485, 966
XapI	RAATTY	1 cut(s)	563
XhoI	CTCGAG	1 cut(s)	215
XmiI	GTMKAC	3 cut(s)	612, 929, 937
XspI	CTAG	3 cut(s)	146, 152, 825
ZraI	GACGTC	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.