MD13G1185700.v1.1

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
15809800 .. 15811793
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1185700.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGTGGACCTCTCCTTCCTCGCCCTCCTCCTCCTCCTCCCGCTCGCCCTCCTCTTCCTCATTCTCTACGTCATAGTCCGGCCCTGCCCCGTCAATATCCCAATCAAGAACCGCCACGTGTTCATCACCGGAGGCTCCAGCGGAATCGGTCTCGCCCTGGCCCACCAGGCCGCCACGGCGGGCGCAAGAGTCTCCATCCTCGCGCGCTCCCTCGACAAGCTCGAGGAAGCAAAGAACTACATCCAGCTGTCCACCGGCATCGACGTGTCAATCTTCGCCGCCGACGTCCGCGACTACGACGCCGTTTCGAAGGCAGTGGAGGAGGCGGGTCCCATCGACTTGTTGATCGTGAACCAGGGGGTGTTCGTCGCCGAGGAGCTCGAGAAGCAGGGATTGGATGAGGTGAGGTTCATGGTGGACGTGAATCTGATTGGGAGCTTCAACATGATCAAAGCCGCTCTCCCCGAAATGAAGAAGGGAGAGGACCGTGGGCCCCGCTCGATCGCGCTGATGTCATCCCAGGCCGGCCAGGTCGGAATCTACGGCTACACGGCCTACTCCGCCAGCAAGTTCGGGCTCCGTGGCTTGGGCGAGGCTCTGCAGCAAGAGGTGATTTCTCACGACATTCACGTTTCTCTTGTATTCCCGCCGGACACAGACACCCCTGGTTTCGCTGAAGAGAACAAGAGGCGGCCGCCGCTGACTGGCATTATAGCGGAGTCGTCTGGGGCGATGAAAGCCGAAGATGTTGCGAAGAGGGCTTTGGATGGGATTAAGTCCGCTTCTTTTATTGTGCGTTGCAACTTTGAAGGGTTATTGTTGTCTATTGCCACTGCTGGGATGTCTCCTCAGAGGTCGTTCGTTATGGCATTTTTGGAGGTGGTTGCGGGTGGTTTGGTTCGTCTTGTTGCTCTGTGTTTTCAGTGGAGTTGGTATACCAGCATACACAAGTGGCAAGCACAGAGCAAGAGGACCTGA

Protein Analysis

326

Amino Acids

35.17

Weight (kDa)

6.24

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 39 - 230 1.4e-42 short chain dehydrogenase
KR PF08659 40 - 190 3.8e-10 KR domain
adh_short_C2 PF13561 47 - 229 2.2e-24 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
AccBSI CCGCTC 3 cut(s) 43, 458, 498
AccI GTMKAC 1 cut(s) 935
AccII CGCG 4 cut(s) 203, 205, 291, 506
AcoI YGGCCR 2 cut(s) 526, 692
AcuI CTGAAG 1 cut(s) 696
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 2 cut(s) 285, 300
AfiI CCNNNNNNNGG 3 cut(s) 586, 704, 837
AflIII ACRYGT 2 cut(s) 117, 264
AgsI TTSAA 2 cut(s) 442, 809
AjiI CACGTC 2 cut(s) 265, 421
AjnI CCWGG 6 cut(s) 156, 165, 354, 519, 528, 664
AjuI GAANNNNNNNTTGG 4 cut(s) 377, 409, 746, 778
AluBI AGCT 4 cut(s) 220, 247, 379, 438
AluI AGCT 4 cut(s) 220, 247, 379, 438
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 3 cut(s) 155, 196, 849
Ama87I CYCGRG 2 cut(s) 221, 380
AoxI GGCC 8 cut(s) 80, 159, 168, 491, 522, 526, 552, 692
ApaI GGGCCC 1 cut(s) 495
ApeKI GCWGC 1 cut(s) 601
AspLEI GCGC 4 cut(s) 185, 205, 207, 508
AspS9I GGNCC 8 cut(s) 7, 81, 160, 329, 484, 491, 492, 972
AsuHPI GGTGA 3 cut(s) 118, 415, 622
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 2 cut(s) 221, 380
AvaII GGWCC 4 cut(s) 7, 329, 484, 972
BaeGI GKGCMC 1 cut(s) 495
BanII GRGCYC 3 cut(s) 381, 495, 579
BbrPI CACGTG 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 613
BccI CCATC 3 cut(s) 203, 341, 761
BceAI ACGGC 4 cut(s) 192, 287, 559, 567
BcgI CGANNNNNNTGC 2 cut(s) 731, 765
BciT130I CCWGG 6 cut(s) 158, 167, 356, 521, 530, 666
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 3 cut(s) 155, 196, 849
BfmI CTRYAG 1 cut(s) 599
BglI GCCNNNNNGGC 2 cut(s) 167, 176
BisI GCNGC 7 cut(s) 171, 279, 456, 602, 692, 695, 698
BlsI GCNGC 7 cut(s) 172, 280, 457, 603, 693, 696, 699
Bme1390I CCNGG 6 cut(s) 158, 167, 356, 521, 530, 666
Bme18I GGWCC 4 cut(s) 7, 329, 484, 972
BmeT110I CYCGRG 2 cut(s) 221, 380
BmgBI CACGTC 2 cut(s) 265, 421
BmgT120I GGNCC 8 cut(s) 7, 81, 160, 329, 484, 491, 492, 972
BmiI GGNNCC 6 cut(s) 136, 330, 331, 493, 494, 578
BmrFI CCNGG 6 cut(s) 158, 167, 356, 521, 530, 666
BmsI GCATC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 118
BsaHI GRCGYC 2 cut(s) 285, 300
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 8 cut(s) 156, 174, 355, 372, 487, 519, 580, 664
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 3 cut(s) 586, 704, 837
Bse118I RCCGGY 2 cut(s) 254, 524
Bse1I ACTGG 1 cut(s) 709
BseBI CCWGG 6 cut(s) 158, 167, 356, 521, 530, 666
BseDI CCNNGG 8 cut(s) 156, 174, 355, 372, 487, 519, 580, 664
BseGI GGATG 6 cut(s) 195, 240, 403, 515, 772, 846
BseLI CCNNNNNNNGG 3 cut(s) 586, 704, 837
BseMII CTCAG 1 cut(s) 863
BseNI ACTGG 1 cut(s) 709
BsePI GCGCGC 1 cut(s) 203
BseRI GAGGAG 8 cut(s) 17, 20, 23, 26, 41, 335, 389, 837
BseSI GKGCMC 1 cut(s) 495
BseX3I CGGCCG 1 cut(s) 692
BseXI GCAGC 1 cut(s) 613
BseYI CCCAGC 1 cut(s) 836
Bsh1236I CGCG 4 cut(s) 203, 205, 291, 506
Bsh1285I CGRYCG 2 cut(s) 504, 695
BshFI GGCC 8 cut(s) 82, 161, 170, 493, 524, 528, 554, 694
BsiEI CGRYCG 2 cut(s) 504, 695
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 2 cut(s) 221, 380
BsiSI CCGG 5 cut(s) 79, 129, 255, 525, 650
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 3 cut(s) 586, 704, 837
BsmAI GTCTC 3 cut(s) 155, 196, 849
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 8 cut(s) 82, 161, 170, 493, 524, 528, 554, 694
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 2 cut(s) 221, 380
Bsp119I TTCGAA 1 cut(s) 308
Bsp120I GGGCCC 1 cut(s) 491
Bsp1286I GDGCHC 3 cut(s) 381, 495, 579
Bsp143I GATC 3 cut(s) 345, 447, 501
BspANI GGCC 8 cut(s) 82, 161, 170, 493, 524, 528, 554, 694
BspCNI CTCAG 1 cut(s) 862
BspFNI CGCG 4 cut(s) 203, 205, 291, 506
BspLI GGNNCC 6 cut(s) 136, 330, 331, 493, 494, 578
BspMAI CTGCAG 1 cut(s) 603
BspT104I TTCGAA 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 155
BsrBI CCGCTC 3 cut(s) 43, 458, 498
BsrFI RCCGGY 2 cut(s) 254, 524
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 2 cut(s) 254, 524
BssECI CCNNGG 8 cut(s) 156, 174, 355, 372, 487, 519, 580, 664
BssHII GCGCGC 1 cut(s) 203
BssMI GATC 3 cut(s) 345, 447, 501
BssNAI GTATAC 1 cut(s) 936
BssNI GRCGYC 2 cut(s) 285, 300
Bst1107I GTATAC 1 cut(s) 936
Bst2UI CCWGG 6 cut(s) 158, 167, 356, 521, 530, 666
Bst4CI ACNGT 1 cut(s) 488
Bst6I CTCTTC 3 cut(s) 59, 672, 749
BstACI GRCGYC 2 cut(s) 285, 300
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 6 cut(s) 45, 181, 205, 526, 565, 957
BstDEI CTNAG 1 cut(s) 849
BstDSI CCRYGG 3 cut(s) 174, 487, 580
BstF5I GGATG 6 cut(s) 195, 240, 403, 515, 772, 846
BstFNI CGCG 4 cut(s) 203, 205, 291, 506
BstHHI GCGC 4 cut(s) 185, 205, 207, 508
BstKTI GATC 3 cut(s) 348, 450, 504
BstMAI GTCTC 3 cut(s) 155, 196, 849
BstMBI GATC 3 cut(s) 345, 447, 501
BstMCI CGRYCG 2 cut(s) 504, 695
BstMWI GCNNNNNNNGC 7 cut(s) 167, 176, 385, 560, 697, 737, 758
BstNI CCWGG 6 cut(s) 158, 167, 356, 521, 530, 666
BstSCI CCNGG 6 cut(s) 156, 165, 354, 519, 528, 664
BstSFI CTRYAG 1 cut(s) 599
BstSLI GKGCMC 1 cut(s) 495
BstUI CGCG 4 cut(s) 203, 205, 291, 506
BstV1I GCAGC 1 cut(s) 613
BstZ17I GTATAC 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 692
BsuRI GGCC 8 cut(s) 82, 161, 170, 493, 524, 528, 554, 694
BtgI CCRYGG 3 cut(s) 174, 487, 580
BtgZI GCGATG 1 cut(s) 746
BtrI CACGTC 2 cut(s) 265, 421
BtsCI GGATG 6 cut(s) 195, 240, 403, 515, 772, 846
BtsI GCAGTG 2 cut(s) 321, 831
BtsIMutI CAGTG 3 cut(s) 321, 831, 929
Cac8I GCNNGC 6 cut(s) 45, 181, 205, 526, 565, 957
CciNI GCGGCCGC 1 cut(s) 692
CfoI GCGC 4 cut(s) 185, 205, 207, 508
Cfr10I RCCGGY 2 cut(s) 254, 524
Cfr13I GGNCC 8 cut(s) 7, 81, 160, 329, 484, 491, 492, 972
CseI GACGC 1 cut(s) 308
CviAII CATG 2 cut(s) 412, 445
DdeI CTNAG 1 cut(s) 849
DpnI GATC 3 cut(s) 347, 449, 503
DpnII GATC 3 cut(s) 345, 447, 501
EaeI YGGCCR 2 cut(s) 526, 692
EagI CGGCCG 1 cut(s) 692
Eam1104I CTCTTC 3 cut(s) 59, 672, 749
EarI CTCTTC 3 cut(s) 59, 672, 749
EciI GGCGGA 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 692
Eco24I GRGCYC 3 cut(s) 381, 495, 579
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 4 cut(s) 7, 329, 484, 972
Eco52I CGGCCG 1 cut(s) 692
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 696
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 221, 380
EcoICRI GAGCTC 1 cut(s) 379
EcoO109I RGGNCCY 3 cut(s) 329, 492, 972
EcoRII CCWGG 6 cut(s) 156, 165, 354, 519, 528, 664
EcoT38I GRGCYC 3 cut(s) 381, 495, 579
FaeI CATG 2 cut(s) 415, 448
FaiI YATR 7 cut(s) 74, 413, 446, 713, 866, 936, 944
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 411, 444
FauI CCCGC 6 cut(s) 48, 172, 319, 503, 654, 880
FbaI TGATCA 1 cut(s) 447
FblI GTMKAC 1 cut(s) 935
Fnu4HI GCNGC 7 cut(s) 171, 279, 456, 602, 692, 695, 698
FokI GGATG 6 cut(s) 182, 227, 410, 502, 779, 853
FriOI GRGCYC 3 cut(s) 381, 495, 579
FseI GGCCGGCC 1 cut(s) 528
Fsp4HI GCNGC 7 cut(s) 171, 279, 456, 602, 692, 695, 698
GlaI GCGC 4 cut(s) 184, 204, 206, 507
GluI GCNGC 7 cut(s) 171, 279, 456, 602, 692, 695, 698
GsaI CCCAGC 1 cut(s) 840
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 8 cut(s) 82, 161, 170, 493, 524, 528, 554, 694
HapII CCGG 5 cut(s) 79, 129, 255, 525, 650
HgaI GACGC 1 cut(s) 308
HhaI GCGC 4 cut(s) 185, 205, 207, 508
Hin1I GRCGYC 2 cut(s) 285, 300
Hin1II CATG 2 cut(s) 415, 448
Hin6I GCGC 4 cut(s) 183, 203, 205, 506
HinP1I GCGC 4 cut(s) 183, 203, 205, 506
HinfI GANTC 5 cut(s) 144, 189, 424, 537, 719
HpaII CCGG 5 cut(s) 79, 129, 255, 525, 650
HphI GGTGA 3 cut(s) 118, 415, 622
Hpy166II GTNNAC 5 cut(s) 7, 252, 352, 418, 936
Hpy188I TCNGA 3 cut(s) 429, 536, 852
Hpy188III TCNNGA 4 cut(s) 106, 349, 382, 620
Hpy8I GTNNAC 5 cut(s) 7, 252, 352, 418, 936
Hpy99I CGWCG 4 cut(s) 266, 287, 302, 371
HpyAV CCTTC 4 cut(s) 25, 304, 469, 803
HpyCH4III ACNGT 1 cut(s) 488
HpyCH4IV ACGT 6 cut(s) 69, 117, 264, 285, 420, 630
HpyCH4V TGCA 2 cut(s) 601, 801
HpyF10VI GCNNNNNNNGC 7 cut(s) 167, 176, 385, 560, 697, 737, 758
HpyF3I CTNAG 1 cut(s) 849
HpySE526I ACGT 6 cut(s) 69, 117, 264, 285, 420, 630
Hsp92I GRCGYC 2 cut(s) 285, 300
Hsp92II CATG 2 cut(s) 415, 448
HspAI GCGC 4 cut(s) 183, 203, 205, 506
KflI GGGWCCC 1 cut(s) 329
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 3 cut(s) 345, 447, 501
LmnI GCTCC 5 cut(s) 140, 212, 376, 435, 582
Lsp1109I GCAGC 1 cut(s) 613
LweI GCATC 1 cut(s) 267
MaeII ACGT 6 cut(s) 69, 117, 264, 285, 420, 630
MalI GATC 3 cut(s) 347, 449, 503
MbiI CCGCTC 3 cut(s) 43, 458, 498
MboI GATC 3 cut(s) 345, 447, 501
MboII GAAGA 6 cut(s) 46, 265, 484, 689, 755, 766
MhlI GDGCHC 3 cut(s) 381, 495, 579
MlyI GAGTC 2 cut(s) 198, 728
MmeI TCCRAC 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 524
MseI TTAA 1 cut(s) 774
MslI CAYNNNNRTG 1 cut(s) 263
MspA1I CMGCKG 3 cut(s) 141, 247, 700
MspI CCGG 5 cut(s) 79, 129, 255, 525, 650
MspR9I CCNGG 6 cut(s) 158, 167, 356, 521, 530, 666
MvaI CCWGG 6 cut(s) 158, 167, 356, 521, 530, 666
MvnI CGCG 4 cut(s) 203, 205, 291, 506
MwoI GCNNNNNNNGC 7 cut(s) 167, 176, 385, 560, 697, 737, 758
NaeI GCCGGC 1 cut(s) 526
NdeII GATC 3 cut(s) 345, 447, 501
NgoMIV GCCGGC 1 cut(s) 524
NlaIII CATG 2 cut(s) 415, 448
NlaIV GGNNCC 6 cut(s) 136, 330, 331, 493, 494, 578
NmeAIII GCCGAG 1 cut(s) 397
NotI GCGGCCGC 1 cut(s) 692
NspV TTCGAA 1 cut(s) 308
PaeR7I CTCGAG 2 cut(s) 221, 380
PauI GCGCGC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 4 cut(s) 219, 282, 627, 728
PdiI GCCGGC 1 cut(s) 526
PfeI GAWTC 3 cut(s) 144, 424, 537
PkrI GCNGC 7 cut(s) 172, 280, 457, 603, 693, 696, 699
Ple19I CGATCG 1 cut(s) 504
PleI GAGTC 2 cut(s) 197, 727
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 2 cut(s) 197, 727
Ppu21I YACGTR 1 cut(s) 118
PpuMI RGGWCCY 2 cut(s) 329, 972
Psp124BI GAGCTC 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 329, 972
Psp6I CCWGG 6 cut(s) 156, 165, 354, 519, 528, 664
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 6 cut(s) 156, 165, 354, 519, 528, 664
PspN4I GGNNCC 6 cut(s) 136, 330, 331, 493, 494, 578
PspOMI GGGCCC 1 cut(s) 491
PspPI GGNCC 8 cut(s) 7, 81, 160, 329, 484, 491, 492, 972
PspPPI RGGWCCY 2 cut(s) 329, 972
PspXI VCTCGAGB 1 cut(s) 221
PstI CTGCAG 1 cut(s) 603
PteI GCGCGC 1 cut(s) 203
PvuI CGATCG 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 247
RigI GGCCGGCC 1 cut(s) 528
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 1 cut(s) 774
SatI GCNGC 7 cut(s) 171, 279, 456, 602, 692, 695, 698
Sau3AI GATC 3 cut(s) 345, 447, 501
Sau96I GGNCC 8 cut(s) 7, 81, 160, 329, 484, 491, 492, 972
SchI GAGTC 2 cut(s) 198, 728
ScrFI CCNGG 6 cut(s) 158, 167, 356, 521, 530, 666
SduI GDGCHC 3 cut(s) 381, 495, 579
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 599
SfiI GGCCNNNNNGGCC 1 cut(s) 167
Sfr274I CTCGAG 2 cut(s) 221, 380
SfuI TTCGAA 1 cut(s) 308
SinI GGWCC 4 cut(s) 7, 329, 484, 972
SlaI CTCGAG 2 cut(s) 221, 380
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 221, 380
SmoI CTYRAG 2 cut(s) 221, 380
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 6 cut(s) 156, 165, 354, 519, 528, 664
TaaI ACNGT 1 cut(s) 488
TaiI ACGT 6 cut(s) 72, 120, 267, 288, 423, 633
TaqI TCGA 7 cut(s) 213, 222, 261, 308, 336, 381, 500
TaqII GACCGA 1 cut(s) 137
TauI GCSGC 6 cut(s) 173, 281, 458, 694, 697, 700
TfiI GAWTC 3 cut(s) 144, 424, 537
Tru1I TTAA 1 cut(s) 774
Tru9I TTAA 1 cut(s) 774
TscAI CASTG 3 cut(s) 321, 838, 929
TseI GCWGC 1 cut(s) 601
TspDTI ATGAA 4 cut(s) 112, 400, 485, 749
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 3 cut(s) 321, 838, 929
VpaK11BI GGWCC 4 cut(s) 7, 329, 484, 972
XhoI CTCGAG 2 cut(s) 221, 380
XmiI GTMKAC 1 cut(s) 935
ZraI GACGTC 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.