Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

20472162 .. 20477083

Gene Structure 4922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G197600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCATACTTCAACCTCTCTTTCCTCGCCCTCCTCCTCCTCCTCCTGCCCCCACTCGCTCTCCTTCTCATCCTCTACCTCATAGTCCGGCCCCGCCCTGTCAAGATCCCAATCAAGAACCGCCACGTGTTCATCACCGGAGGTTCCAGCGGAATCGGGCTGGCATTGGCCCATCAGGCCGCCTCCGAGGGTGCCCGAGTCTCCATCCTCGCCCGCTCCATCGACAAGCTCGAGGAAGCAAAGAAGTACATCCAACTCTCCACGGGCATTGACGTGTCGATCTTCTCTGCTGACGTTCGTGACTACGATGCAGTATCAAAAGCGGTGGAGGAGGCAGACCCCATTGATGTGCTGATTGTCAACCAAGGGGTCTTCGTCCCTGATGAACTCGAGAAGCAGGGATTGGATGAGGTGAAGTTCATGGTGGACGTAAATCTGATCGGCAGCTTCAACATGATCAAAGCTGCTTTGCCCAAAATGAAGAAAGGAGACAGTATACCCCGTTCGATTGCTCTCATGTCTTCCCAAGCTGGTCAAGTTGGTATCTACGGCTACACAGCTTACTCTGCGAGCAAGTTTGGGCTTCGTGGGTTGGCCGAAGCTCTGCAACAAGAGGTGATATCTCATGATATTCATGTTTCTCTTATATTCCCTCCGGACACAGACACCCCTGGTCTCACTGAAGAGATGAAAAAGCGGCCGCAACTATCTAGCATTATAGCAGAGTCATCAGGGATGATGAAAGCTGAAGAAGTTGCGAAGAAGGCTTTTGAGGGGATCAAGTCTGCTGCTTTTATTGTGCCTTGTAACCTTGAAGGGGCGTTGCTGTCTATTGCCACTGCTGGGATGTCTCCTCAGAGATCGTTTGTTATGGCATTTGTTGAAGTGGTTGCTGCTGGTTTGGTTCGTCTTGTTGCTCTATTTTTTCAGTGGAATTGGTATAATGGTATACACAAGTGGCATGCACAGAACAAAAGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

328

Amino Acids

35.61

Weight (kDa)

7.8

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	216
AccI	GTMKAC	2 cut(s)	496, 949
AccIII	TCCGGA	1 cut(s)	655
AciI	CCGC	8 cut(s)	94, 121, 150, 180, 214, 323, 697, 701
AclWI	GGATC	2 cut(s)	100, 785
AcoI	YGGCCR	2 cut(s)	594, 698
AcuI	CTGAAG	2 cut(s)	702, 768
AcvI	CACGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	2 cut(s)	817, 843
AflIII	ACRYGT	2 cut(s)	126, 273
AgsI	TTSAA	4 cut(s)	13, 451, 815, 884
AjiI	CACGTC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	670
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	7 cut(s)	229, 447, 464, 530, 560, 602, 746
AluI	AGCT	7 cut(s)	229, 447, 464, 530, 560, 602, 746
Alw26I	GTCTC	4 cut(s)	205, 483, 680, 855
AlwI	GGATC	2 cut(s)	100, 785
Ama87I	CYCGRG	3 cut(s)	195, 230, 389
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	6 cut(s)	89, 168, 177, 594, 698, 978
ApeKI	GCWGC	4 cut(s)	444, 464, 788, 893
AspS9I	GGNCC	3 cut(s)	90, 169, 978
AsuHPI	GGTGA	3 cut(s)	127, 424, 628
AvaI	CYCGRG	3 cut(s)	195, 230, 389
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	191
BbrPI	CACGTG	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	364, 513
BbvI	GCAGC	4 cut(s)	451, 456, 775, 880
BccI	CCATC	3 cut(s)	180, 212, 227
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	672
BclI	TGATCA	1 cut(s)	456
BcoDI	GTCTC	4 cut(s)	205, 483, 680, 855
BfaI	CTAG	2 cut(s)	711, 982
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	7 cut(s)	180, 445, 465, 698, 701, 789, 894
BlsI	GCNGC	7 cut(s)	181, 446, 466, 699, 702, 790, 895
Bme1390I	CCNGG	1 cut(s)	672
BmeT110I	CYCGRG	3 cut(s)	195, 230, 389
BmgBI	CACGTC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	90, 169, 978
BmiI	GGNNCC	3 cut(s)	92, 145, 193
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	2 cut(s)	364, 513
BsaAI	YACGTR	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	186, 261, 364, 670
BsaWI	WCCGGW	2 cut(s)	137, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	817, 843
Bse8I	GATNNNNATC	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	4 cut(s)	186, 261, 364, 670
BseGI	GGATG	6 cut(s)	69, 204, 249, 412, 741, 852
BseJI	GATNNNNATC	1 cut(s)	110
BseLI	CCNNNNNNNGG	2 cut(s)	817, 843
BseMII	CTCAG	1 cut(s)	869
BseRI	GAGGAG	6 cut(s)	23, 26, 29, 32, 344, 843
BseSI	GKGCMC	1 cut(s)	196
BseX3I	CGGCCG	1 cut(s)	698
BseXI	GCAGC	4 cut(s)	451, 456, 775, 880
BseYI	CCCAGC	1 cut(s)	842
Bsh1285I	CGRYCG	1 cut(s)	701
BshFI	GGCC	6 cut(s)	91, 170, 179, 596, 700, 980
BshNI	GGYRCC	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	701
BsiHKCI	CYCGRG	3 cut(s)	195, 230, 389
BsiSI	CCGG	3 cut(s)	88, 138, 656
BslFI	GGGAC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	817, 843
BsmAI	GTCTC	4 cut(s)	205, 483, 680, 855
BsmFI	GGGAC	1 cut(s)	362
BsnI	GGCC	6 cut(s)	91, 170, 179, 596, 700, 980
Bso31I	GGTCTC	1 cut(s)	680
BsoBI	CYCGRG	3 cut(s)	195, 230, 389
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
BspACI	CCGC	8 cut(s)	94, 121, 150, 180, 214, 323, 697, 701
BspANI	GGCC	6 cut(s)	91, 170, 179, 596, 700, 980
BspCNI	CTCAG	1 cut(s)	868
BspEI	TCCGGA	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	3 cut(s)	92, 145, 193
BspPI	GGATC	2 cut(s)	100, 785
BspT107I	GGYRCC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	216
BssECI	CCNNGG	4 cut(s)	186, 261, 364, 670
BssMI	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
BssNAI	GTATAC	2 cut(s)	497, 950
BssT1I	CCWWGG	1 cut(s)	364
Bst1107I	GTATAC	2 cut(s)	497, 950
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	1 cut(s)	678
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	4 cut(s)	162, 214, 571, 963
BstDEI	CTNAG	1 cut(s)	855
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	6 cut(s)	69, 204, 249, 412, 741, 852
BstKTI	GATC	6 cut(s)	108, 282, 441, 459, 780, 863
BstMAI	GTCTC	4 cut(s)	205, 483, 680, 855
BstMBI	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
BstMCI	CGRYCG	1 cut(s)	701
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 566, 764
BstNI	CCWGG	1 cut(s)	672
BstNSI	RCATGY	1 cut(s)	965
BstSCI	CCNGG	1 cut(s)	670
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	4 cut(s)	451, 456, 775, 880
BstV2I	GAAGAC	2 cut(s)	364, 513
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZ17I	GTATAC	2 cut(s)	497, 950
BstZI	CGGCCG	1 cut(s)	698
BsuRI	GGCC	6 cut(s)	91, 170, 179, 596, 700, 980
BtgI	CCRYGG	1 cut(s)	261
BtrI	CACGTC	1 cut(s)	274
BtsCI	GGATG	6 cut(s)	69, 204, 249, 412, 741, 852
BtsI	GCAGTG	1 cut(s)	837
BtsIMutI	CAGTG	3 cut(s)	678, 837, 935
Cac8I	GCNNGC	4 cut(s)	162, 214, 571, 963
CciI	TCATGA	1 cut(s)	625
CciNI	GCGGCCGC	1 cut(s)	698
Cfr13I	GGNCC	3 cut(s)	90, 169, 978
Csp6I	GTAC	1 cut(s)	247
CspCI	CAANNNNNGTGG	4 cut(s)	250, 285, 306, 341
CviAII	CATG	6 cut(s)	421, 454, 517, 626, 635, 962
CviQI	GTAC	1 cut(s)	247
DdeI	CTNAG	1 cut(s)	855
DpnI	GATC	6 cut(s)	107, 281, 440, 458, 779, 862
DpnII	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
EaeI	YGGCCR	2 cut(s)	594, 698
EagI	CGGCCG	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
EclXI	CGGCCG	1 cut(s)	698
Eco130I	CCWWGG	1 cut(s)	364
Eco31I	GGTCTC	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	621
Eco52I	CGGCCG	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	702, 768
Eco72I	CACGTG	1 cut(s)	127
Eco88I	CYCGRG	3 cut(s)	195, 230, 389
EcoO109I	RGGNCCY	1 cut(s)	978
EcoRII	CCWGG	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	364
ErhI	CCWWGG	1 cut(s)	364
FaeI	CATG	6 cut(s)	424, 457, 520, 629, 638, 965
FaqI	GGGAC	1 cut(s)	362
FatI	CATG	6 cut(s)	420, 453, 516, 625, 634, 961
FauI	CCCGC	2 cut(s)	101, 221
FbaI	TGATCA	1 cut(s)	456
FblI	GTMKAC	2 cut(s)	496, 949
Fnu4HI	GCNGC	7 cut(s)	180, 445, 465, 698, 701, 789, 894
FokI	GGATG	6 cut(s)	56, 191, 236, 419, 748, 859
Fsp4HI	GCNGC	7 cut(s)	180, 445, 465, 698, 701, 789, 894
FspBI	CTAG	2 cut(s)	711, 982
GluI	GCNGC	7 cut(s)	180, 445, 465, 698, 701, 789, 894
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	6 cut(s)	91, 170, 179, 596, 700, 980
HapII	CCGG	3 cut(s)	88, 138, 656
Hin1II	CATG	6 cut(s)	424, 457, 520, 629, 638, 965
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	153, 198, 725
HpaII	CCGG	3 cut(s)	88, 138, 656
HphI	GGTGA	3 cut(s)	127, 424, 628
Hpy166II	GTNNAC	4 cut(s)	361, 427, 497, 950
Hpy188I	TCNGA	3 cut(s)	187, 438, 858
Hpy188III	TCNNGA	6 cut(s)	103, 115, 299, 391, 626, 656
Hpy8I	GTNNAC	4 cut(s)	361, 427, 497, 950
HpyAV	CCTTC	3 cut(s)	74, 757, 809
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	4 cut(s)	126, 273, 294, 429
HpyCH4V	TGCA	3 cut(s)	311, 607, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 566, 764
HpyF3I	CTNAG	1 cut(s)	855
HpySE526I	ACGT	4 cut(s)	126, 273, 294, 429
Hsp92II	CATG	6 cut(s)	424, 457, 520, 629, 638, 965
Kpn2I	TCCGGA	1 cut(s)	655
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
LmnI	GCTCC	1 cut(s)	221
Lsp1109I	GCAGC	4 cut(s)	451, 456, 775, 880
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	711, 982
MaeII	ACGT	4 cut(s)	126, 273, 294, 429
MaeIII	GTNAC	2 cut(s)	299, 806
MalI	GATC	6 cut(s)	107, 281, 440, 458, 779, 862
MbiI	CCGCTC	1 cut(s)	216
MboI	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
MboII	GAAGA	7 cut(s)	274, 364, 493, 513, 695, 761, 772
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	1 cut(s)	934
MlyI	GAGTC	2 cut(s)	207, 734
MmeI	TCCRAC	1 cut(s)	277
MroI	TCCGGA	1 cut(s)	655
MslI	CAYNNNNRTG	2 cut(s)	272, 347
MspA1I	CMGCKG	1 cut(s)	150
MspI	CCGG	3 cut(s)	88, 138, 656
MspR9I	CCNGG	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	3 cut(s)	176, 566, 764
NdeII	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
NlaIII	CATG	6 cut(s)	424, 457, 520, 629, 638, 965
NlaIV	GGNNCC	3 cut(s)	92, 145, 193
NmuCI	GTSAC	1 cut(s)	299
NotI	GCGGCCGC	1 cut(s)	698
NspI	RCATGY	1 cut(s)	965
PaeI	GCATGC	1 cut(s)	965
PaeR7I	CTCGAG	2 cut(s)	230, 389
PagI	TCATGA	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	153
PkrI	GCNGC	7 cut(s)	181, 446, 466, 699, 702, 790, 895
PleI	GAGTC	2 cut(s)	206, 733
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	2 cut(s)	206, 733
Ppu21I	YACGTR	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	670
PspCI	CACGTG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	670
PspN4I	GGNNCC	3 cut(s)	92, 145, 193
PspPI	GGNCC	3 cut(s)	90, 169, 978
PspXI	VCTCGAGB	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	487, 519
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	2 cut(s)	272, 347
SatI	GCNGC	7 cut(s)	180, 445, 465, 698, 701, 789, 894
Sau3AI	GATC	6 cut(s)	105, 279, 438, 456, 777, 860
Sau96I	GGNCC	3 cut(s)	90, 169, 978
SchI	GAGTC	2 cut(s)	207, 734
ScrFI	CCNGG	1 cut(s)	672
SduI	GDGCHC	1 cut(s)	196
SfaNI	GCATC	1 cut(s)	298
SfiI	GGCCNNNNNGGCC	1 cut(s)	176
Sfr274I	CTCGAG	2 cut(s)	230, 389
SlaI	CTCGAG	2 cut(s)	230, 389
SmiMI	CAYNNNNRTG	2 cut(s)	272, 347
SmlI	CTYRAG	2 cut(s)	230, 389
SmoI	CTYRAG	2 cut(s)	230, 389
SphI	GCATGC	1 cut(s)	965
Sse9I	AATT	1 cut(s)	934
SsiI	CCGC	8 cut(s)	94, 121, 150, 180, 214, 323, 697, 701
SspMI	CTAG	2 cut(s)	711, 982
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	4 cut(s)	129, 276, 297, 432
TaqI	TCGA	5 cut(s)	222, 231, 278, 390, 506
TasI	AATT	1 cut(s)	934
TatI	WGTACW	1 cut(s)	246
TauI	GCSGC	3 cut(s)	182, 700, 703
TfiI	GAWTC	1 cut(s)	153
TscAI	CASTG	3 cut(s)	685, 844, 935
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	4 cut(s)	444, 464, 788, 893
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	7 cut(s)	121, 399, 409, 494, 623, 704, 755
TspRI	CASTG	3 cut(s)	685, 844, 935
XceI	RCATGY	1 cut(s)	965
XhoI	CTCGAG	2 cut(s)	230, 389
XmiI	GTMKAC	2 cut(s)	496, 949
XspI	CTAG	2 cut(s)	711, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.