RchiOBHm_Chr6g0272881

3-ketodihydrosphingosine reductase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
33363482 .. 33365788
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24481

Sequence Viewer

Length: 972 bp
ATGGCGGACCCCATCTTCTCCTTCCTCCTCCTCCTCCCTCTGGCTCTCCTCCTCCTCCTCTACTTCATTGTCCGCCCCCGCCCCACCACTGTCCCAATCAAGAACCGCCACGTCTTCATCACCGGTGGTTCTAGCGGCATAGGCCTCGCCCTGGCCCACCGCGCCGCCTCTGAGGGCGCCAAAGTCTCCATCCTTGCGCGCTCTTTCGATAAGCTCGAGGAGGCCAAGAACTACATCCTGCTCTCCACAGGCATCGACGTCACCGTCTTCGCTGCCGACGTACGTGACTACGAAGCAGTTTCGAAGGCTGTCGAGGTGGCGGGTCCGATTGACGTGTTGGTCATCAACCAGGGAGTGTTTGTGGCCCAGGAGTTAGAGAAGCAGGGATTGGATGAGATCAAGTTCATGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCAAGAATGAAAGACAGGAAGGACCATGGACCGGGTTCCATTGCTTTAATGTCATCTCAGGTCGGTCAGGTTGGGATATACGGCTACGCGGCATATTCCGCTAGCAAATTTGGGCTTCGGGGTTTGGCTGAAGCTCTACAACAAGAGGTCATTGTAGACGACATTCATGTTTCGCTGATTTTCCCTCCGGCTACTGACACTCCTGGACTCACTAAAGAAACTAAGAAGAGGCCGCAACTGACCAACATTATCACGGAATCCTCTAGTGCAATGAAAGCTGAGGAAGTTGCGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGTTGGGTTGTCACCTCAGAGATCGTTCATGATGGCATTTGTGGAGGTGGTTGCTGCTGGTATAATACGTATTGTTGCTCTAGGATTTCAGTGGAATTGGTATACAAGTATACACAAGTGGCATGGACAAAACAAAAGTAGCTGA

Protein Analysis

323

Amino Acids

35.02

Weight (kDa)

8.49

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 37 - 228 7.2e-44 short chain dehydrogenase
KR PF08659 38 - 200 6.2e-10 KR domain
adh_short_C2 PF13561 45 - 250 5.4e-27 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 263, 338
AatII GACGTC 2 cut(s) 261, 417
AccB1I GGYRCC 1 cut(s) 176
AccI GTMKAC 3 cut(s) 612, 929, 937
AccII CGCG 3 cut(s) 162, 199, 545
AcsI RAATTY 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 3 cut(s) 177, 258, 414
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 4 cut(s) 40, 151, 487, 831
AflIII ACRYGT 1 cut(s) 333
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 2 cut(s) 436, 803
AjiI CACGTC 2 cut(s) 112, 334
AjnI CCWGG 4 cut(s) 150, 348, 366, 658
AjuI GAANNNNNNNTTGG 4 cut(s) 371, 403, 740, 772
AluBI AGCT 7 cut(s) 214, 432, 449, 590, 734, 755, 969
AluI AGCT 7 cut(s) 214, 432, 449, 590, 734, 755, 969
Alw26I GTCTC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 215
AoxI GGCC 5 cut(s) 142, 153, 222, 363, 686
ApeKI GCWGC 3 cut(s) 272, 449, 881
ApoI RAATTY 1 cut(s) 563
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 4 cut(s) 164, 179, 199, 201
AspS9I GGNCC 6 cut(s) 7, 154, 323, 364, 478, 485
AsuC2I CCSGG 1 cut(s) 489
AsuHPI GGTGA 3 cut(s) 112, 253, 831
AsuII TTCGAA 1 cut(s) 302
AsuNHI GCTAGC 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 215
AvaII GGWCC 4 cut(s) 7, 323, 478, 485
BanI GGYRCC 1 cut(s) 176
BbsI GAAGAC 2 cut(s) 106, 259
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 259, 436, 868
BccI CCATC 5 cut(s) 20, 197, 418, 755, 853
BceAI ACGGC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 4 cut(s) 152, 350, 368, 660
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 4 cut(s) 132, 558, 720, 908
BfoI RGCGCY 1 cut(s) 180
BisI GCNGC 7 cut(s) 136, 165, 273, 450, 546, 689, 882
BlsI GCNGC 7 cut(s) 137, 166, 274, 451, 547, 690, 883
Bme1390I CCNGG 5 cut(s) 152, 350, 368, 489, 660
Bme18I GGWCC 4 cut(s) 7, 323, 478, 485
BmeT110I CYCGRG 1 cut(s) 215
BmgBI CACGTC 2 cut(s) 112, 334
BmgT120I GGNCC 6 cut(s) 7, 154, 323, 364, 478, 485
BmiI GGNNCC 4 cut(s) 9, 178, 324, 493
BmrFI CCNGG 5 cut(s) 152, 350, 368, 489, 660
BmsI GCATC 1 cut(s) 261
BmtI GCTAGC 1 cut(s) 561
BpiI GAAGAC 2 cut(s) 106, 259
Bpu10I CCTNAGC 1 cut(s) 735
Bpu14I TTCGAA 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 489
BsaAI YACGTR 2 cut(s) 284, 896
BsaHI GRCGYC 3 cut(s) 177, 258, 414
BsaJI CCNNGG 4 cut(s) 150, 349, 366, 481
BsaWI WCCGGW 1 cut(s) 122
BsaXI ACNNNNNCTCC 4 cut(s) 345, 375, 640, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 151, 487, 831
Bse118I RCCGGY 1 cut(s) 122
Bse3DI GCAATG 2 cut(s) 495, 732
BseBI CCWGG 4 cut(s) 152, 350, 368, 660
BseDI CCNNGG 4 cut(s) 150, 349, 366, 481
BseGI GGATG 4 cut(s) 189, 234, 397, 766
BseLI CCNNNNNNNGG 4 cut(s) 40, 151, 487, 831
BseMI GCAATG 2 cut(s) 495, 732
BseMII CTCAG 4 cut(s) 162, 527, 726, 857
BsePI GCGCGC 1 cut(s) 197
BseRI GAGGAG 8 cut(s) 17, 20, 23, 38, 41, 44, 47, 233
BseXI GCAGC 3 cut(s) 259, 436, 868
Bsh1236I CGCG 3 cut(s) 162, 199, 545
BshFI GGCC 5 cut(s) 144, 155, 224, 365, 688
BshNI GGYRCC 1 cut(s) 176
BshTI ACCGGT 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 215
BsiSI CCGG 3 cut(s) 123, 488, 644
BsiWI CGTACG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 4 cut(s) 40, 151, 487, 831
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 5 cut(s) 144, 155, 224, 365, 688
BsoBI CYCGRG 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 396, 441, 848
Bsp19I CCATGG 1 cut(s) 481
BspANI GGCC 5 cut(s) 144, 155, 224, 365, 688
BspCNI CTCAG 4 cut(s) 163, 526, 727, 856
BspFNI CGCG 3 cut(s) 162, 199, 545
BspHI TCATGA 1 cut(s) 855
BspLI GGNNCC 4 cut(s) 9, 178, 324, 493
BspOI GCTAGC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 495, 732
BsrFI RCCGGY 1 cut(s) 122
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 4 cut(s) 150, 349, 366, 481
BssHII GCGCGC 1 cut(s) 197
BssMI GATC 3 cut(s) 396, 441, 848
BssNAI GTATAC 2 cut(s) 930, 938
BssNI GRCGYC 3 cut(s) 177, 258, 414
BssT1I CCWWGG 1 cut(s) 481
Bst1107I GTATAC 2 cut(s) 930, 938
Bst2UI CCWGG 4 cut(s) 152, 350, 368, 660
Bst4CI ACNGT 3 cut(s) 91, 265, 829
Bst6I CTCTTC 1 cut(s) 677
BstACI GRCGYC 3 cut(s) 177, 258, 414
BstBAI YACGTR 2 cut(s) 284, 896
BstBI TTCGAA 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 199, 559
BstDEI CTNAG 5 cut(s) 171, 513, 678, 735, 843
BstDSI CCRYGG 1 cut(s) 481
BstF5I GGATG 4 cut(s) 189, 234, 397, 766
BstFNI CGCG 3 cut(s) 162, 199, 545
BstH2I RGCGCY 1 cut(s) 180
BstHHI GCGC 4 cut(s) 164, 179, 199, 201
BstKTI GATC 3 cut(s) 399, 444, 851
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 3 cut(s) 396, 441, 848
BstMWI GCNNNNNNNGC 5 cut(s) 141, 161, 554, 731, 752
BstNI CCWGG 4 cut(s) 152, 350, 368, 660
BstSCI CCNGG 5 cut(s) 150, 348, 366, 487, 658
BstSNI TACGTA 1 cut(s) 896
BstUI CGCG 3 cut(s) 162, 199, 545
BstV1I GCAGC 3 cut(s) 259, 436, 868
BstV2I GAAGAC 2 cut(s) 106, 259
BstZ17I GTATAC 2 cut(s) 930, 938
BsuRI GGCC 5 cut(s) 144, 155, 224, 365, 688
BtgI CCRYGG 1 cut(s) 481
BtrI CACGTC 2 cut(s) 112, 334
BtsCI GGATG 4 cut(s) 189, 234, 397, 766
BtsIMutI CAGTG 3 cut(s) 87, 825, 923
Cac8I GCNNGC 2 cut(s) 199, 559
CciI TCATGA 1 cut(s) 855
CfoI GCGC 4 cut(s) 164, 179, 199, 201
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 6 cut(s) 7, 154, 323, 364, 478, 485
Csp6I GTAC 1 cut(s) 281
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 6 cut(s) 406, 439, 482, 623, 856, 950
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 5 cut(s) 171, 513, 678, 735, 843
DinI GGCGCC 1 cut(s) 178
DpnI GATC 3 cut(s) 398, 443, 850
DpnII GATC 3 cut(s) 396, 441, 848
DrdI GACNNNNNNGTC 2 cut(s) 263, 338
DseDI GACNNNNNNGTC 2 cut(s) 263, 338
Eam1104I CTCTTC 1 cut(s) 677
EarI CTCTTC 1 cut(s) 677
EciI GGCGGA 2 cut(s) 20, 62
Eco105I TACGTA 1 cut(s) 896
Eco130I CCWWGG 1 cut(s) 481
Eco147I AGGCCT 1 cut(s) 144
Eco47I GGWCC 4 cut(s) 7, 323, 478, 485
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 215
EcoRII CCWGG 4 cut(s) 150, 348, 366, 658
EcoT14I CCWWGG 1 cut(s) 481
EgeI GGCGCC 1 cut(s) 178
EheI GGCGCC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 6 cut(s) 409, 442, 485, 626, 859, 953
FaqI GGGAC 1 cut(s) 77
FatI CATG 6 cut(s) 405, 438, 481, 622, 855, 949
FauI CCCGC 2 cut(s) 86, 313
FbaI TGATCA 1 cut(s) 441
FblI GTMKAC 3 cut(s) 612, 929, 937
Fnu4HI GCNGC 7 cut(s) 136, 165, 273, 450, 546, 689, 882
FokI GGATG 4 cut(s) 176, 221, 404, 773
Fsp4HI GCNGC 7 cut(s) 136, 165, 273, 450, 546, 689, 882
FspBI CTAG 4 cut(s) 132, 558, 720, 908
GlaI GCGC 4 cut(s) 163, 178, 198, 200
GluI GCNGC 7 cut(s) 136, 165, 273, 450, 546, 689, 882
HaeII RGCGCY 1 cut(s) 180
HaeIII GGCC 5 cut(s) 144, 155, 224, 365, 688
HapII CCGG 3 cut(s) 123, 488, 644
HhaI GCGC 4 cut(s) 164, 179, 199, 201
Hin1I GRCGYC 3 cut(s) 177, 258, 414
Hin1II CATG 6 cut(s) 409, 442, 485, 626, 859, 953
Hin6I GCGC 4 cut(s) 162, 177, 197, 199
HinP1I GCGC 4 cut(s) 162, 177, 197, 199
HindIII AAGCTT 1 cut(s) 753
HinfI GANTC 3 cut(s) 663, 713, 765
HpaII CCGG 3 cut(s) 123, 488, 644
HphI GGTGA 3 cut(s) 112, 253, 831
Hpy166II GTNNAC 4 cut(s) 412, 613, 930, 938
Hpy188I TCNGA 3 cut(s) 172, 327, 846
Hpy188III TCNNGA 2 cut(s) 100, 856
Hpy8I GTNNAC 4 cut(s) 412, 613, 930, 938
Hpy99I CGWCG 2 cut(s) 260, 281
HpyAV CCTTC 4 cut(s) 31, 298, 469, 797
HpyCH4III ACNGT 3 cut(s) 91, 265, 829
HpyCH4IV ACGT 7 cut(s) 111, 258, 279, 283, 333, 414, 895
HpyCH4V TGCA 2 cut(s) 725, 795
HpyF10VI GCNNNNNNNGC 5 cut(s) 141, 161, 554, 731, 752
HpyF3I CTNAG 5 cut(s) 171, 513, 678, 735, 843
HpySE526I ACGT 7 cut(s) 111, 258, 279, 283, 333, 414, 895
Hsp92I GRCGYC 3 cut(s) 177, 258, 414
Hsp92II CATG 6 cut(s) 409, 442, 485, 626, 859, 953
HspAI GCGC 4 cut(s) 162, 177, 197, 199
KasI GGCGCC 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 3 cut(s) 396, 441, 848
Lsp1109I GCAGC 3 cut(s) 259, 436, 868
LweI GCATC 1 cut(s) 261
MaeI CTAG 4 cut(s) 132, 558, 720, 908
MaeII ACGT 7 cut(s) 111, 258, 279, 283, 333, 414, 895
MaeIII GTNAC 3 cut(s) 259, 284, 837
MalI GATC 3 cut(s) 398, 443, 850
MboI GATC 3 cut(s) 396, 441, 848
MboII GAAGA 5 cut(s) 7, 106, 259, 694, 760
MluCI AATT 3 cut(s) 418, 563, 922
Mly113I GGCGCC 1 cut(s) 177
MlyI GAGTC 1 cut(s) 657
MseI TTAA 1 cut(s) 503
MspI CCGG 3 cut(s) 123, 488, 644
MspR9I CCNGG 5 cut(s) 152, 350, 368, 489, 660
MvaI CCWGG 4 cut(s) 152, 350, 368, 660
MvnI CGCG 3 cut(s) 162, 199, 545
MwoI GCNNNNNNNGC 5 cut(s) 141, 161, 554, 731, 752
NarI GGCGCC 1 cut(s) 177
NciI CCSGG 1 cut(s) 489
NcoI CCATGG 1 cut(s) 481
NdeII GATC 3 cut(s) 396, 441, 848
NheI GCTAGC 1 cut(s) 557
NlaIII CATG 6 cut(s) 409, 442, 485, 626, 859, 953
NlaIV GGNNCC 4 cut(s) 9, 178, 324, 493
NmuCI GTSAC 3 cut(s) 259, 284, 837
NspV TTCGAA 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 215
PagI TCATGA 1 cut(s) 855
PauI GCGCGC 1 cut(s) 197
PceI AGGCCT 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 261, 276
PfeI GAWTC 2 cut(s) 713, 765
Pfl23II CGTACG 1 cut(s) 280
PfoI TCCNGGA 1 cut(s) 658
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 7 cut(s) 137, 166, 274, 451, 547, 690, 883
PleI GAGTC 1 cut(s) 657
PluTI GGCGCC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 657
Ppu21I YACGTR 2 cut(s) 284, 896
Psp6I CCWGG 4 cut(s) 150, 348, 366, 658
PspGI CCWGG 4 cut(s) 150, 348, 366, 658
PspLI CGTACG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 9, 178, 324, 493
PspPI GGNCC 6 cut(s) 7, 154, 323, 364, 478, 485
PspXI VCTCGAGB 1 cut(s) 215
PteI GCGCGC 1 cut(s) 197
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 503
SatI GCNGC 7 cut(s) 136, 165, 273, 450, 546, 689, 882
Sau3AI GATC 3 cut(s) 396, 441, 848
Sau96I GGNCC 6 cut(s) 7, 154, 323, 364, 478, 485
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 5 cut(s) 152, 350, 368, 489, 660
SfaNI GCATC 1 cut(s) 261
SfoI GGCGCC 1 cut(s) 178
Sfr274I CTCGAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 302
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 4 cut(s) 7, 323, 478, 485
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SnaBI TACGTA 1 cut(s) 896
Sse9I AATT 3 cut(s) 418, 563, 922
SseBI AGGCCT 1 cut(s) 144
SspDI GGCGCC 1 cut(s) 176
SspMI CTAG 4 cut(s) 132, 558, 720, 908
StuI AGGCCT 1 cut(s) 144
StyD4I CCNGG 5 cut(s) 150, 348, 366, 487, 658
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 3 cut(s) 91, 265, 829
TaiI ACGT 7 cut(s) 114, 261, 282, 286, 336, 417, 898
TaqI TCGA 5 cut(s) 207, 216, 255, 302, 312
TaqII GACCGA 1 cut(s) 509
TasI AATT 3 cut(s) 418, 563, 922
TauI GCSGC 4 cut(s) 138, 167, 548, 691
TfiI GAWTC 2 cut(s) 713, 765
Tru1I TTAA 1 cut(s) 503
Tru9I TTAA 1 cut(s) 503
TscAI CASTG 3 cut(s) 94, 832, 923
TseFI GTSAC 3 cut(s) 259, 284, 837
TseI GCWGC 3 cut(s) 272, 449, 881
Tsp45I GTSAC 3 cut(s) 259, 284, 837
TspDTI ATGAA 7 cut(s) 55, 106, 394, 479, 611, 743, 844
TspGWI ACGGA 1 cut(s) 725
TspRI CASTG 3 cut(s) 94, 832, 923
VpaK11BI GGWCC 4 cut(s) 7, 323, 478, 485
XapI RAATTY 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 215
XmiI GTMKAC 3 cut(s) 612, 929, 937
XspI CTAG 4 cut(s) 132, 558, 720, 908
ZraI GACGTC 2 cut(s) 259, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.