Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Reverse (-)

33307684 .. 33308725

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24479

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGGACCCCATCTTCTCCTTCCTCCTCCTCCTCCTCTACTTCATTGTCCACCCCTACCCCACCACTGTCCCAATCGAGAACAGCCACATCTTCATCTCCGGTGGTTTTAGCGGCATCGGCCTTTCCCTGGCCCACCGTGCTGCCTCTGAGGGCGCTAAAGTATCCATCCATGCGCGCTCTCTTGACAAGCTCGAGGAGGCCAAGAAGTACATCCAGCTCTCCACAGACATCGACGTCACTGTCTTCGCCTCCGACGTGCGTGACTACGAAGCAGTTTCAACGGCTGTCGTGGCGGTGGGCCCGATCGACATGTTGGTCCTCAACCAGGGAGTGTTTATGGCCGAGGAGTTAGAAAAGCAAGGATTGGATAAGGTCAGGTTCATGGTGGACGTCAATTTGATGGGTAGCTTCAACATGATCAAAGCTGCTTTGCCTGGAATGAAAGACAGGAAGGAACGTGGACCGGGTTCGAGTGCTTTGATGTCATCGCAGGTTGGTCAGCAAGAGGTCATTGTAGACAACATTCACGTTTCAATGATTTTCCCTCCGGCTACTGGCACTCCTGGACTCACTAAAGAAACTAAGAAGTGGCCGCAGCTGACCAACATTGTCGTGGAATCTTCTGGTTCAATGAAAGCTACGGAAGTTGTGAAGAAAGCTTTGGATGGAATCAAGTCTGCTTCTTTTATTGTGCCTTGCAACTTTGAAGGGCTTTTGTTGTCTATTGCCACTGCTGGGTTGTCACCTCAGAGATCGTTTGTGATGGCATTTATGGAGGTGGTTGCTGCTGGTATAATACGTATTTCTGCTCTGAGATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

274

Amino Acids

29.56

Weight (kDa)

5.98

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	30 - 172	4.5e-23	short chain dehydrogenase
KR	PF08659	31 - 143	7.2e-06	KR domain
adh_short_C2	PF13561	38 - 170	5.1e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
AatII	GACGTC	2 cut(s)	240, 396
Acc36I	ACCTGC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	178
AciI	CCGC	3 cut(s)	114, 296, 596
AcoI	YGGCCR	2 cut(s)	342, 593
AcyI	GRCGYC	2 cut(s)	237, 393
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	4 cut(s)	130, 328, 557, 738
AflIII	ACRYGT	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	282, 415, 537, 633, 710
AjiI	CACGTC	1 cut(s)	259
AjnI	CCWGG	4 cut(s)	129, 327, 436, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	647, 679
AluBI	AGCT	7 cut(s)	193, 220, 411, 428, 601, 641, 662
AluI	AGCT	7 cut(s)	193, 220, 411, 428, 601, 641, 662
Ama87I	CYCGRG	1 cut(s)	194
AoxI	GGCC	6 cut(s)	121, 132, 201, 301, 342, 593
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	4 cut(s)	143, 428, 598, 788
AspLEI	GCGC	3 cut(s)	158, 178, 180
AspS9I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
AsuC2I	CCSGG	1 cut(s)	468
AsuHPI	GGTGA	1 cut(s)	738
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	3 cut(s)	7, 319, 464
BaeGI	GKGCMC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	130, 415, 610, 775
BccI	CCATC	5 cut(s)	20, 176, 397, 662, 760
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	4 cut(s)	131, 329, 438, 567
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	159
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	6 cut(s)	115, 144, 429, 596, 599, 789
BlsI	GCNGC	6 cut(s)	116, 145, 430, 597, 600, 790
Bme1390I	CCNGG	5 cut(s)	131, 329, 438, 468, 567
Bme18I	GGWCC	3 cut(s)	7, 319, 464
BmeT110I	CYCGRG	1 cut(s)	194
BmgBI	CACGTC	1 cut(s)	259
BmgT120I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
BmiI	GGNNCC	2 cut(s)	9, 303
BmrFI	CCNGG	5 cut(s)	131, 329, 438, 468, 567
BmsI	GCATC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	468
BsaAI	YACGTR	1 cut(s)	803
BsaHI	GRCGYC	2 cut(s)	237, 393
BsaJI	CCNNGG	3 cut(s)	129, 328, 345
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 328, 557, 738
Bse1I	ACTGG	1 cut(s)	562
BseBI	CCWGG	4 cut(s)	131, 329, 438, 567
BseDI	CCNNGG	3 cut(s)	129, 328, 345
BseGI	GGATG	3 cut(s)	168, 213, 673
BseLI	CCNNNNNNNGG	4 cut(s)	130, 328, 557, 738
BseMII	CTCAG	3 cut(s)	141, 764, 806
BseNI	ACTGG	1 cut(s)	562
BsePI	GCGCGC	1 cut(s)	176
BseRI	GAGGAG	6 cut(s)	17, 20, 23, 26, 212, 362
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	4 cut(s)	130, 415, 610, 775
BseYI	CCCAGC	1 cut(s)	737
Bsh1236I	CGCG	1 cut(s)	178
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 595
BsiEI	CGRYCG	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	102, 467, 551
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	4 cut(s)	130, 328, 557, 738
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 595
BsoBI	CYCGRG	1 cut(s)	194
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	1 cut(s)	305
Bsp143I	GATC	4 cut(s)	306, 420, 755, 818
BspACI	CCGC	3 cut(s)	114, 296, 596
BspANI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 595
BspCNI	CTCAG	3 cut(s)	142, 763, 807
BspFNI	CGCG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	9, 303
BspMI	ACCTGC	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	3 cut(s)	129, 328, 345
BssHII	GCGCGC	1 cut(s)	176
BssMI	GATC	4 cut(s)	306, 420, 755, 818
BssNI	GRCGYC	2 cut(s)	237, 393
Bst2UI	CCWGG	4 cut(s)	131, 329, 438, 567
Bst4CI	ACNGT	3 cut(s)	70, 140, 244
BstACI	GRCGYC	2 cut(s)	237, 393
BstBAI	YACGTR	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	5 cut(s)	150, 585, 750, 815, 822
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	3 cut(s)	168, 213, 673
BstFNI	CGCG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	3 cut(s)	158, 178, 180
BstKTI	GATC	4 cut(s)	309, 423, 758, 821
BstMBI	GATC	4 cut(s)	306, 420, 755, 818
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
BstNI	CCWGG	4 cut(s)	131, 329, 438, 567
BstNSI	RCATGY	1 cut(s)	316
BstSCI	CCNGG	5 cut(s)	129, 327, 436, 466, 565
BstSLI	GKGCMC	1 cut(s)	305
BstSNI	TACGTA	1 cut(s)	803
BstUI	CGCG	1 cut(s)	178
BstV1I	GCAGC	4 cut(s)	130, 415, 610, 775
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BsuI	GTATCC	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	123, 134, 203, 303, 344, 595
BtgZI	GCGATG	1 cut(s)	474
BtrI	CACGTC	1 cut(s)	259
BtsCI	GGATG	3 cut(s)	168, 213, 673
BtsI	GCAGTG	1 cut(s)	732
BtsIMutI	CAGTG	3 cut(s)	66, 240, 732
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	178
CfoI	GCGC	3 cut(s)	158, 178, 180
Cfr13I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	173, 313, 385, 418
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	5 cut(s)	150, 585, 750, 815, 822
DpnI	GATC	4 cut(s)	308, 422, 757, 820
DpnII	GATC	4 cut(s)	306, 420, 755, 818
DrdI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
DseDI	GACNNNNNNGTC	3 cut(s)	236, 242, 317
EaeI	YGGCCR	2 cut(s)	342, 593
Eco105I	TACGTA	1 cut(s)	803
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	7, 319, 464
Eco88I	CYCGRG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	7
EcoRII	CCWGG	4 cut(s)	129, 327, 436, 565
EcoT38I	GRGCYC	1 cut(s)	305
FaeI	CATG	4 cut(s)	176, 316, 388, 421
FaiI	YATR	7 cut(s)	174, 314, 341, 386, 419, 776, 797
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	4 cut(s)	172, 312, 384, 417
FbaI	TGATCA	1 cut(s)	420
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	6 cut(s)	115, 144, 429, 596, 599, 789
FokI	GGATG	3 cut(s)	155, 200, 680
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	6 cut(s)	115, 144, 429, 596, 599, 789
GlaI	GCGC	3 cut(s)	157, 177, 179
GluI	GCNGC	6 cut(s)	115, 144, 429, 596, 599, 789
GsaI	CCCAGC	1 cut(s)	741
HaeII	RGCGCY	1 cut(s)	159
HaeIII	GGCC	6 cut(s)	123, 134, 203, 303, 344, 595
HapII	CCGG	3 cut(s)	102, 467, 551
HhaI	GCGC	3 cut(s)	158, 178, 180
Hin1I	GRCGYC	2 cut(s)	237, 393
Hin1II	CATG	4 cut(s)	176, 316, 388, 421
Hin6I	GCGC	3 cut(s)	156, 176, 178
HinP1I	GCGC	3 cut(s)	156, 176, 178
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	570, 620, 672
HpaII	CCGG	3 cut(s)	102, 467, 551
HphI	GGTGA	1 cut(s)	738
Hpy166II	GTNNAC	4 cut(s)	52, 391, 464, 520
Hpy188I	TCNGA	4 cut(s)	151, 256, 753, 816
Hpy188III	TCNNGA	2 cut(s)	79, 185
Hpy8I	GTNNAC	4 cut(s)	52, 391, 464, 520
Hpy99I	CGWCG	2 cut(s)	239, 260
HpyAV	CCTTC	3 cut(s)	31, 448, 704
HpyCH4III	ACNGT	3 cut(s)	70, 140, 244
HpyCH4IV	ACGT	6 cut(s)	237, 258, 393, 460, 531, 802
HpyCH4V	TGCA	1 cut(s)	702
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
HpyF3I	CTNAG	5 cut(s)	150, 585, 750, 815, 822
HpySE526I	ACGT	6 cut(s)	237, 258, 393, 460, 531, 802
Hsp92I	GRCGYC	2 cut(s)	237, 393
Hsp92II	CATG	4 cut(s)	176, 316, 388, 421
HspAI	GCGC	3 cut(s)	156, 176, 178
Ksp22I	TGATCA	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	306, 420, 755, 818
Lsp1109I	GCAGC	4 cut(s)	130, 415, 610, 775
LweI	GCATC	1 cut(s)	126
MaeII	ACGT	6 cut(s)	237, 258, 393, 460, 531, 802
MaeIII	GTNAC	3 cut(s)	238, 263, 744
MalI	GATC	4 cut(s)	308, 422, 757, 820
MboI	GATC	4 cut(s)	306, 420, 755, 818
MboII	GAAGA	5 cut(s)	7, 85, 238, 615, 667
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	1 cut(s)	305
MluCI	AATT	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	564
MmeI	TCCRAC	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	614
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	3 cut(s)	102, 467, 551
MspR9I	CCNGG	5 cut(s)	131, 329, 438, 468, 567
MvaI	CCWGG	4 cut(s)	131, 329, 438, 567
MvnI	CGCG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	120, 140, 293
NciI	CCSGG	1 cut(s)	468
NdeII	GATC	4 cut(s)	306, 420, 755, 818
NlaIII	CATG	4 cut(s)	176, 316, 388, 421
NlaIV	GGNNCC	2 cut(s)	9, 303
NmeAIII	GCCGAG	1 cut(s)	370
NmuCI	GTSAC	3 cut(s)	238, 263, 744
NspI	RCATGY	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	194
PauI	GCGCGC	1 cut(s)	176
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	620, 672
PfoI	TCCNGGA	1 cut(s)	565
PkrI	GCNGC	6 cut(s)	116, 145, 430, 597, 600, 790
Ple19I	CGATCG	1 cut(s)	309
PleI	GAGTC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	564
Ppu21I	YACGTR	1 cut(s)	803
PpuMI	RGGWCCY	1 cut(s)	7
PscI	ACATGT	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	4 cut(s)	129, 327, 436, 565
PspFI	CCCAGC	1 cut(s)	737
PspGI	CCWGG	4 cut(s)	129, 327, 436, 565
PspN4I	GGNNCC	2 cut(s)	9, 303
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
PspPPI	RGGWCCY	1 cut(s)	7
PspXI	VCTCGAGB	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	818
PteI	GCGCGC	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	614
SatI	GCNGC	6 cut(s)	115, 144, 429, 596, 599, 789
Sau3AI	GATC	4 cut(s)	306, 420, 755, 818
Sau96I	GGNCC	6 cut(s)	7, 133, 301, 302, 319, 464
SchI	GAGTC	1 cut(s)	564
ScrFI	CCNGG	5 cut(s)	131, 329, 438, 468, 567
SduI	GDGCHC	1 cut(s)	305
SfaNI	GCATC	1 cut(s)	126
Sfr274I	CTCGAG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	7, 319, 464
SlaI	CTCGAG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SnaBI	TACGTA	1 cut(s)	803
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	3 cut(s)	114, 296, 596
StyD4I	CCNGG	5 cut(s)	129, 327, 436, 466, 565
TaaI	ACNGT	3 cut(s)	70, 140, 244
TaiI	ACGT	6 cut(s)	240, 261, 396, 463, 534, 805
TaqI	TCGA	5 cut(s)	78, 195, 234, 309, 473
TasI	AATT	1 cut(s)	397
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	2 cut(s)	117, 598
TfiI	GAWTC	2 cut(s)	620, 672
TscAI	CASTG	3 cut(s)	73, 247, 739
TseFI	GTSAC	3 cut(s)	238, 263, 744
TseI	GCWGC	4 cut(s)	143, 428, 598, 788
Tsp45I	GTSAC	3 cut(s)	238, 263, 744
TspDTI	ATGAA	5 cut(s)	34, 85, 373, 458, 650
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	3 cut(s)	73, 247, 739
VpaK11BI	GGWCC	3 cut(s)	7, 319, 464
XagI	CCTNNNNNAGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	613
XhoI	CTCGAG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	519
ZraI	GACGTC	2 cut(s)	238, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.