Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004142.1

Orthogroup ID

OG0001067

Physical Location & Seq

Genomic Coordinates Forward (+)

61058 .. 62133

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004142.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggcggaccccaacttctccttcgtccccctcctccctctctctctccccctcctcctccacttcatcgtccgcccccgccccaccgccgtcccaatcaagaaagccacgtcttcatcaccagcgctcgaggaggccaagaactacatccagctctccatcggcatccacatcgccatcttcactggcgacattcgtgactacgacgcagttttgaaggctgttaaggcggcgggcccgatcgatgtgttggtcgttaaccagggagtgtttgtggccaaggagttggagaagcaggtattggatgaggtcaggttcatggtggacgtcaatctgatcggtagcttcaacatgataaaagctgctttgctgggaatgaaagacagaaagaaccgtgggcgcgggcttgacttttctaatgttgtcttaggcaggtcagatgacattcacatttctctgattttccctccggatactgacactcctggactcactgaagtggaaacctctagtgcaatgaaagccaaggaagttgcgaagaaagctttggatggaatcaagtctgcttcctttattgtgccttgcaactttgtagtgcttttgttgtccattgccagtgcagggttgtcgccccagagatcatccgtcatggcatttgtggaggtggttgctattggtgtaatacagatagctgctctgggatttcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006629 GO:0006643 GO:0006665 GO:0006666 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0030148 GO:0031984 GO:0042175 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0047560 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

236

Amino Acids

25.35

Weight (kDa)

7.83

Isoelectric Point (pI)

29.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06060 AT3G06060 AT5G19200
fragaria_vesca	FvH4_4g14820
malus_domestica	MD13G1185700.v1.1
prunus_persica	Prupe.6G171900_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1 Prupe.6G197600_v2.0.a1
pyrus_communis	pycom13g16020 pycom16g15630
rosa_chinensis	RchiOBHm_Chr4g0417501 RchiOBHm_Chr6g0272751 RchiOBHm_Chr6g0272831 RchiOBHm_Chr6g0272851 RchiOBHm_Chr6g0272861 RchiOBHm_Chr6g0272881
rosa_laevigata	RLG00000007902 RLG00000007903 RLG00000007908 RLG00000007909 RLG00000013658 RLG00000013659 RLG00000023098
rosa_multiflora	Rmu_co8170416.1_g000001 Rmu_co8391473.1_g000001 Rmu_sc0002793.1_g000014 Rmu_sc0004142.1_g000014 Rmu_sc0004142.1_g000018 Rmu_sc0004540.1_g000023 Rmu_ssc0000024.1_g000001
rosa_roxburghii	Rroxscaffold_7G00195980 Rroxscaffold_7G00196010 Rroxscaffold_7G00196020
rosa_rugosa	Rorug04G0148100 Rorug04G0148100 Rorug04G0148200 Rorug04G0148300 Rorug04G0148400 Rorug06G0070800
rosa_samantha	Rh4AG211400 Rh4BG211600 Rh4CG222100 Rh4DG209100 Rh6AG186800 Rh6BG190200 Rh6CG189000 Rh6CG189300 Rh6CG189600 Rh6DG180400 Rh6DG180700 Rh6DG180800 Rh6DG180900 Rh7AG364400 Rh7DG358900
rosa_wichuraiana	Rw4G017870 Rw6G016120 Rw6G016130 Rw6G016150 Rw7G030890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	330
Acc36I	ACCTGC	2 cut(s)	286, 423
AccII	CGCG	1 cut(s)	402
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	7 cut(s)	5, 73, 79, 87, 230, 233, 402
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	327
AfeI	AGCGCT	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	621
AgsI	TTSAA	2 cut(s)	217, 349
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	261, 484
AjuI	GAANNNNNNNTTGG	5 cut(s)	37, 284, 316, 530, 562
AleI	CACNNNNGTG	1 cut(s)	497
AluBI	AGCT	5 cut(s)	154, 345, 362, 545, 692
AluI	AGCT	5 cut(s)	154, 345, 362, 545, 692
Ama87I	CYCGRG	1 cut(s)	128
Aor13HI	TCCGGA	1 cut(s)	469
Aor51HI	AGCGCT	1 cut(s)	126
AoxI	GGCC	3 cut(s)	135, 235, 276
ApaI	GGGCCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	362, 692
AspLEI	GCGC	2 cut(s)	127, 402
AspS9I	GGNCC	3 cut(s)	7, 235, 236
AsuHPI	GGTGA	1 cut(s)	111
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	2 cut(s)	349, 679
BccI	CCATC	3 cut(s)	167, 185, 545
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	4 cut(s)	154, 188, 609, 643
BciT130I	CCWGG	2 cut(s)	263, 486
BciVI	GTATCC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	510
BfoI	RGCGCY	1 cut(s)	128
BfuAI	ACCTGC	2 cut(s)	286, 423
BfuI	GTATCC	1 cut(s)	466
BisI	GCNGC	3 cut(s)	231, 363, 693
BlsI	GCNGC	3 cut(s)	232, 364, 694
Bme1390I	CCNGG	2 cut(s)	263, 486
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	3 cut(s)	7, 235, 236
BmiI	GGNNCC	2 cut(s)	9, 237
BmrFI	CCNGG	2 cut(s)	263, 486
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	4 cut(s)	262, 279, 394, 525
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	2 cut(s)	190, 615
Bse3DI	GCAATG	2 cut(s)	522, 609
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	2 cut(s)	263, 486
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	4 cut(s)	262, 279, 394, 525
BseGI	GGATG	5 cut(s)	147, 165, 310, 556, 641
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMI	GCAATG	2 cut(s)	522, 609
BseNI	ACTGG	2 cut(s)	190, 615
BseRI	GAGGAG	4 cut(s)	23, 44, 47, 146
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	349, 679
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	639
Bsh1236I	CGCG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	137, 237, 278
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	2 cut(s)	11, 77
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmFI	GGGAC	2 cut(s)	11, 77
BsnI	GGCC	3 cut(s)	137, 237, 278
BsoBI	CYCGRG	1 cut(s)	128
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	3 cut(s)	240, 336, 638
BspACI	CCGC	7 cut(s)	5, 73, 79, 87, 230, 233, 402
BspANI	GGCC	3 cut(s)	137, 237, 278
BspDI	ATCGAT	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	402
BspLI	GGNNCC	2 cut(s)	9, 237
BspMI	ACCTGC	2 cut(s)	286, 423
BsrDI	GCAATG	2 cut(s)	522, 609
BsrI	ACTGG	2 cut(s)	190, 615
BssECI	CCNNGG	4 cut(s)	262, 279, 394, 525
BssMI	GATC	3 cut(s)	240, 336, 638
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	279, 525
Bst2UI	CCWGG	2 cut(s)	263, 486
Bst4CI	ACNGT	1 cut(s)	395
BstACI	GRCGYC	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	235, 404
BstDEI	CTNAG	1 cut(s)	427
BstDSI	CCRYGG	1 cut(s)	394
BstF5I	GGATG	5 cut(s)	147, 165, 310, 556, 641
BstFNI	CGCG	1 cut(s)	402
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 402
BstKTI	GATC	3 cut(s)	243, 339, 641
BstMBI	GATC	3 cut(s)	240, 336, 638
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 521, 542
BstNI	CCWGG	2 cut(s)	263, 486
BstSCI	CCNGG	2 cut(s)	261, 484
BstSLI	GKGCMC	1 cut(s)	239
BstUI	CGCG	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	349, 679
BstV2I	GAAGAC	1 cut(s)	105
BstXI	CCANNNNNNTGG	1 cut(s)	286
Bsu15I	ATCGAT	1 cut(s)	243
BsuI	GTATCC	1 cut(s)	466
BsuRI	GGCC	3 cut(s)	137, 237, 278
BsuTUI	ATCGAT	1 cut(s)	243
BtgI	CCRYGG	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	147, 165, 310, 556, 641
BtsIMutI	CAGTG	3 cut(s)	183, 492, 622
BveI	ACCTGC	2 cut(s)	286, 423
Cac8I	GCNNGC	2 cut(s)	235, 404
CfoI	GCGC	2 cut(s)	127, 402
Cfr13I	GGNCC	3 cut(s)	7, 235, 236
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	1 cut(s)	215
CviAII	CATG	3 cut(s)	319, 352, 649
DdeI	CTNAG	1 cut(s)	427
DpnI	GATC	3 cut(s)	242, 338, 640
DpnII	GATC	3 cut(s)	240, 336, 638
EaeI	YGGCCR	1 cut(s)	276
EciI	GGCGGA	2 cut(s)	20, 62
Eco130I	CCWWGG	2 cut(s)	279, 525
Eco24I	GRGCYC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	7
Eco47III	AGCGCT	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	516
Eco88I	CYCGRG	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	261, 484
EcoT14I	CCWWGG	2 cut(s)	279, 525
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	2 cut(s)	279, 525
FaeI	CATG	3 cut(s)	322, 355, 652
FaiI	YATR	3 cut(s)	320, 353, 650
FaqI	GGGAC	2 cut(s)	11, 77
FatI	CATG	3 cut(s)	318, 351, 648
FauI	CCCGC	3 cut(s)	86, 226, 395
Fnu4HI	GCNGC	3 cut(s)	231, 363, 693
FokI	GGATG	5 cut(s)	134, 152, 317, 563, 628
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	231, 363, 693
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	2 cut(s)	126, 401
GluI	GCNGC	3 cut(s)	231, 363, 693
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	137, 237, 278
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	215
HhaI	GCGC	2 cut(s)	127, 402
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	322, 355, 652
Hin6I	GCGC	2 cut(s)	125, 400
HinP1I	GCGC	2 cut(s)	125, 400
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	2 cut(s)	489, 555
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	111
Hpy166II	GTNNAC	2 cut(s)	259, 325
Hpy188I	TCNGA	3 cut(s)	336, 439, 459
Hpy188III	TCNNGA	3 cut(s)	100, 197, 470
Hpy8I	GTNNAC	2 cut(s)	259, 325
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	31, 211
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	110, 327
HpyCH4V	TGCA	3 cut(s)	515, 585, 620
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 521, 542
HpyF3I	CTNAG	1 cut(s)	427
HpySE526I	ACGT	2 cut(s)	110, 327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	322, 355, 652
HspAI	GCGC	2 cut(s)	125, 400
Kpn2I	TCCGGA	1 cut(s)	469
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	240, 336, 638
Lsp1109I	GCAGC	2 cut(s)	349, 679
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	110, 327
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	242, 338, 640
MboI	GATC	3 cut(s)	240, 336, 638
MboII	GAAGA	3 cut(s)	105, 172, 550
MhlI	GDGCHC	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	278
MroI	TCCGGA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	2 cut(s)	225, 258
MslI	CAYNNNNRTG	1 cut(s)	497
Msp20I	TGGCCA	1 cut(s)	278
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	263, 486
MvaI	CCWGG	2 cut(s)	263, 486
MvnI	CGCG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	227, 521, 542
NdeII	GATC	3 cut(s)	240, 336, 638
NlaIII	CATG	3 cut(s)	322, 355, 652
NlaIV	GGNNCC	2 cut(s)	9, 237
NmuCI	GTSAC	1 cut(s)	197
OliI	CACNNNNGTG	1 cut(s)	497
PaeR7I	CTCGAG	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	555
PfoI	TCCNGGA	1 cut(s)	484
PkrI	GCNGC	3 cut(s)	232, 364, 694
Ple19I	CGATCG	1 cut(s)	243
PleI	GAGTC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	261, 484
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	2 cut(s)	261, 484
PspN4I	GGNNCC	2 cut(s)	9, 237
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	3 cut(s)	7, 235, 236
PspXI	VCTCGAGB	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	243
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	2 cut(s)	225, 258
SatI	GCNGC	3 cut(s)	231, 363, 693
Sau3AI	GATC	3 cut(s)	240, 336, 638
Sau96I	GGNCC	3 cut(s)	7, 235, 236
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	2 cut(s)	263, 486
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	7 cut(s)	5, 73, 79, 87, 230, 233, 402
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	261, 484
StyI	CCWWGG	2 cut(s)	279, 525
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	113, 330
TaqI	TCGA	2 cut(s)	129, 243
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	2 cut(s)	225, 258
Tru9I	TTAA	2 cut(s)	225, 258
TscAI	CASTG	3 cut(s)	190, 499, 622
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	362, 692
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	5 cut(s)	55, 105, 307, 392, 533
TspGWI	ACGGA	1 cut(s)	634
TspRI	CASTG	3 cut(s)	190, 499, 622
VpaK11BI	GGWCC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	128
XspI	CTAG	1 cut(s)	510
ZraI	GACGTC	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.