AT4G16295

rejection of self pollen

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000965
Physical Location & Seq
Reverse (-)
9215680 .. 9216135
456 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16295.1

Sequence Viewer

Length: 456 bp
ATGAATTGCATCAAACAATTTCTCTTGGCAATTTGCTTTTCTCTGGCCCTAACATGTCAAGACCATGTCTTAGTCGGCGGCACCACCACGAGAGACATTATAGTCCCGAAGATTTCTGAGTGGCAAGTCACGGTTGTTAACGGTTTGACAACTGGTGAAACTCTTTTCATCCATTGTAAATCTAAAGAAGATGATCTAGGTGAAATTAATCTGAAGTTTAGAAATAGATTTTCTTGGAACTTCGGAGAAAATATGCTTCACTCAACTTTTTTTTGGTGCTATATGAACAAAGATAATGGTCATATGAATGTAAACGTGTTTTGGGATGATGTTATCTTGTTCCATAGATGCGGTTGGAAGAATTGCATTTGGACTGCAAAAACTGATGGCCTTTATCTTTGGAATTCAGCGAGCGGTGAAGATGTATTGTCAAGAAAATGGGAAGTTGGATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007154 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0022414 GO:0032501 GO:0044706 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

151

Amino Acids

17.56

Weight (kDa)

6.18

Isoelectric Point (pI)

20.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 42 - 147 2.1e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 101
AccB1I GGYRCC 1 cut(s) 80
AccBSI CCGCTC 1 cut(s) 414
AciI CCGC 3 cut(s) 78, 351, 414
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 233
AflIII ACRYGT 2 cut(s) 53, 315
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 2 cut(s) 45, 388
ApoI RAATTY 1 cut(s) 403
AseI ATTAAT 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 167, 212, 428
BanI GGYRCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 88
BccI CCATC 2 cut(s) 380, 444
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 2 cut(s) 18, 338
Bse1I ACTGG 1 cut(s) 157
BseGI GGATG 3 cut(s) 168, 331, 455
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 2 cut(s) 47, 390
BshNI GGYRCC 1 cut(s) 80
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 2 cut(s) 47, 390
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 3 cut(s) 78, 351, 414
BspANI GGCC 2 cut(s) 47, 390
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 193
BssSI CACGAG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 133, 143
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 2 cut(s) 70, 117
BstF5I GGATG 3 cut(s) 168, 331, 455
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 57
BsuRI GGCC 2 cut(s) 47, 390
BtsCI GGATG 3 cut(s) 168, 331, 455
Cac8I GCNNGC 1 cut(s) 412
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 2 cut(s) 54, 65
CviJI RGCY 2 cut(s) 47, 390
CviKI_1 RGCY 2 cut(s) 47, 390
DdeI CTNAG 2 cut(s) 70, 117
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 101
DseDI GACNNNNNNGTC 1 cut(s) 101
Eco57I CTGAAG 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 403
FaeI CATG 2 cut(s) 57, 68
FaiI YATR 9 cut(s) 55, 66, 101, 254, 282, 284, 303, 305, 345
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 53, 64
FauNDI CATATG 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 155, 338
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 79
HaeIII GGCC 2 cut(s) 47, 390
Hin1II CATG 2 cut(s) 57, 68
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HpaI GTTAAC 1 cut(s) 139
HphI GGTGA 3 cut(s) 167, 212, 428
Hpy166II GTNNAC 2 cut(s) 139, 313
Hpy188I TCNGA 3 cut(s) 118, 213, 245
Hpy188III TCNNGA 3 cut(s) 59, 106, 432
Hpy8I GTNNAC 2 cut(s) 139, 313
HpyCH4III ACNGT 2 cut(s) 133, 143
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 3 cut(s) 9, 366, 377
HpyF3I CTNAG 2 cut(s) 70, 117
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 57, 68
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 29, 138
LweI GCATC 2 cut(s) 18, 338
MaeI CTAG 1 cut(s) 197
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 414
MboI GATC 1 cut(s) 193
MboII GAAGA 4 cut(s) 121, 200, 370, 431
MluCI AATT 6 cut(s) 4, 17, 30, 204, 361, 403
MmeI TCCRAC 2 cut(s) 335, 427
MseI TTAA 2 cut(s) 138, 207
MslI CAYNNNNRTG 1 cut(s) 306
NdeI CATATG 1 cut(s) 303
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 57, 68
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 57
PciI ACATGT 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 80
PscI ACATGT 1 cut(s) 53
PshBI ATTAAT 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 2 cut(s) 138, 207
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 46
SetI ASST 2 cut(s) 202, 318
SfaNI GCATC 2 cut(s) 18, 338
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 6 cut(s) 4, 17, 30, 204, 361, 403
SsiI CCGC 3 cut(s) 78, 351, 414
SspMI CTAG 1 cut(s) 197
TaaI ACNGT 2 cut(s) 133, 143
TaiI ACGT 1 cut(s) 318
TasI AATT 6 cut(s) 4, 17, 30, 204, 361, 403
TauI GCSGC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 138, 207
Tru9I TTAA 2 cut(s) 138, 207
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 17, 157, 299, 320
Tth111I GACNNNGTC 1 cut(s) 65
VspI ATTAAT 1 cut(s) 207
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 57
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.