Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

26286296 .. 26286775

Gene Structure 480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1170200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAGTAGGTTCAGCAACATCCATGTACTTGTTCTTGCATTTGCGATAGCAATGAGTCCTAGCTTGTGCTTTCCTTCAACCAAAGGTGAAGTGTTTCCTTTGTTCACCAAGTGGCATGTATATGTTGTCAACGGATTGGGGAACCAAGAGAGCTTGTTCGTCCATTGTAAATCCAAAGACAATGATTTAGGGATTCAAAAACTCTCACCAGGGACTAATACTACTTGGGGTTTCAGGACAAACTTTTTACACTCTACTCTTTTCTGGTGCTACTTGCGCAAGTCAAGTGCCCAACATGCTGCTCTAAAGGTCTTTTGGCAAGACATTTATCTCTTCGAGAAATGCAACTGGAAAAACTGCATTTGGATAGCAAAAGATGATGGAATTTACATAAAAGATTTTGCTAACGTCCGTGATGAGTTTTCGAAAAAATGGGAAGAAGGATGGATTAAAACACAAGACTCTTACCGCTCATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0007154 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0022414 GO:0032501 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

160

Amino Acids

18.58

Weight (kDa)

8.97

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	39 - 145	3.3e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	278
AccBSI	CCGCTC	1 cut(s)	471
AciI	CCGC	1 cut(s)	469
AcsI	RAATTY	1 cut(s)	384
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	78, 197
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	63, 153
AluI	AGCT	2 cut(s)	63, 153
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	384
Asp700I	GAANNNNTTC	1 cut(s)	93
AspLEI	GCGC	1 cut(s)	279
AsuHPI	GGTGA	3 cut(s)	97, 98, 198
AsuII	TTCGAA	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	292
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	2 cut(s)	374, 438
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	1 cut(s)	60
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	210
Bpu14I	TTCGAA	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	209
BseGI	GGATG	2 cut(s)	18, 449
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	292
BspACI	CCGC	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	425
BsrBI	CCGCTC	1 cut(s)	471
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	209
Bst2UI	CCWGG	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	338
BstBI	TTCGAA	1 cut(s)	425
BstF5I	GGATG	2 cut(s)	18, 449
BstHHI	GCGC	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	276, 296
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	2 cut(s)	119, 299
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	18, 449
CfoI	GCGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	3 cut(s)	23, 116, 296
CviJI	RGCY	2 cut(s)	63, 153
CviKI_1	RGCY	2 cut(s)	63, 153
CviQI	GTAC	1 cut(s)	26
DraIII	CACNNNGTG	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	3 cut(s)	26, 119, 299
FaiI	YATR	6 cut(s)	24, 117, 121, 123, 297, 392
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	22, 115, 295
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	2 cut(s)	5, 456
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	278
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	26, 119, 299
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	55, 193, 461
HphI	GGTGA	3 cut(s)	97, 98, 198
Hpy166II	GTNNAC	2 cut(s)	105, 130
Hpy188III	TCNNGA	2 cut(s)	235, 337
Hpy8I	GTNNAC	2 cut(s)	105, 130
HpyAV	CCTTC	2 cut(s)	84, 434
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	3 cut(s)	38, 345, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	276, 296
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	3 cut(s)	26, 119, 299
HspAI	GCGC	1 cut(s)	277
LpnPI	CCDG	5 cut(s)	195, 220, 222, 250, 334
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	408
MbiI	CCGCTC	1 cut(s)	471
MboII	GAAGA	2 cut(s)	325, 449
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	1 cut(s)	384
MlyI	GAGTC	2 cut(s)	64, 455
MroXI	GAANNNNTTC	1 cut(s)	93
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	276, 296
NlaIII	CATG	3 cut(s)	26, 119, 299
NlaIV	GGNNCC	1 cut(s)	143
NsbI	TGCGCA	1 cut(s)	278
NspI	RCATGY	2 cut(s)	119, 299
NspV	TTCGAA	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	93
PfeI	GAWTC	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	2 cut(s)	63, 455
PpsI	GAGTC	2 cut(s)	63, 455
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	1 cut(s)	300
SchI	GAGTC	2 cut(s)	64, 455
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	11, 65, 88, 155, 312, 411
SfuI	TTCGAA	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	208
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	336, 425
TasI	AATT	1 cut(s)	384
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseI	GCWGC	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	147, 401
XapI	RAATTY	1 cut(s)	384
XceI	RCATGY	2 cut(s)	119, 299
XmnI	GAANNNNTTC	1 cut(s)	93
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.