Rmu_sc0006018.1_g000014

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006018.1
OG0000965
Physical Location & Seq
Reverse (-)
44012 .. 44440
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006018.1_g000014.1.cds

Sequence Viewer

Length: 429 bp
atgagtggtttcaagctctatgtggttgcgcttgtgtctttaacaatcttagccttgactatcccatgttctgctgtgacgtggcatgttcacgtcgtcaatggattgagttctggaagaattctcttcgtccattgcaagtctaaagataatgatctcggcatccataatcttgcagtcggaaccgaaaccacttggagtttcagagaaaacttcatagggacaacacttttttggtgctacctacgcacagaccgtgaagagtatgctgattttgatgtgttctggtcggagcataatcgcaagtggcttcagaccagatgcaactggaaagattgcatatggaccgcaagagatgacggggtttacataaagaacattcctaacaacagtgatgagcttattcatcaatggggaacgcattggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.59

Weight (kDa)

6.35

Isoelectric Point (pI)

22.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 13
AjiI CACGTC 2 cut(s) 81, 94
AluBI AGCT 2 cut(s) 16, 400
AluI AGCT 2 cut(s) 16, 400
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 345
AvaII GGWCC 1 cut(s) 345
Bme18I GGWCC 1 cut(s) 345
BmgBI CACGTC 2 cut(s) 81, 94
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 2 cut(s) 171, 311
BsaBI GATNNNNATC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 153
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 332
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 332
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 257, 392
Bst6I CTCTTC 2 cut(s) 131, 255
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 89
BtrI CACGTC 2 cut(s) 81, 94
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 397
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 2 cut(s) 66, 86
CviJI RGCY 4 cut(s) 16, 53, 310, 400
CviKI_1 RGCY 4 cut(s) 16, 53, 310, 400
DdeI CTNAG 1 cut(s) 49
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 131, 255
EarI CTCTTC 2 cut(s) 131, 255
Eco47I GGWCC 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 296
EcoRI GAATTC 1 cut(s) 120
FaeI CATG 2 cut(s) 69, 89
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 65, 85
FauNDI CATATG 1 cut(s) 341
FokI GGATG 1 cut(s) 149
GlaI GCGC 1 cut(s) 30
HhaI GCGC 1 cut(s) 31
Hin1II CATG 2 cut(s) 69, 89
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
Hpy166II GTNNAC 2 cut(s) 91, 367
Hpy188I TCNGA 4 cut(s) 182, 206, 292, 315
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 91, 367
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 257, 392
HpyCH4IV ACGT 2 cut(s) 80, 93
HpyCH4V TGCA 4 cut(s) 138, 176, 324, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 2 cut(s) 80, 93
Hsp92II CATG 2 cut(s) 69, 89
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 4 cut(s) 99, 271, 313, 331
LweI GCATC 2 cut(s) 171, 311
MaeII ACGT 2 cut(s) 80, 93
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 118, 129, 272
MluCI AATT 1 cut(s) 120
MmeI TCCRAC 2 cut(s) 160, 270
MseI TTAA 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 341
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 69, 89
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 345
SetI ASST 5 cut(s) 18, 83, 96, 246, 402
SfaNI GCATC 2 cut(s) 171, 311
SinI GGWCC 1 cut(s) 345
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 348
TaaI ACNGT 2 cut(s) 257, 392
TaiI ACGT 2 cut(s) 83, 96
TasI AATT 1 cut(s) 120
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 205, 395
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.