Rorug06G0174600

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000965
Physical Location & Seq
Forward (+)
27208080 .. 27210636
2557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0174600.1

Sequence Viewer

Length: 354 bp
ATGGGAGTGGAGAAGGAAGTTCTGAGCGCTGGAACCGGTGCCAAACCGGTGCCAGGTCAAAAGGTCACCGTTCACTGCACTGGTTATGGAAAAAATGGTGATCTCAATCTGAAGTTTTGGAGCACCAAGGACCCTGGGCAGCAGCCTTTCAGCTTCAAAATTGGCCAAGGCTCTGTTATAAAAGGGTGGGATGAAGGCGTCCTTGGAATGCAAGTTGGAGAAGTTGCTCGTCTGAGGGTTATGATTTTGCAGTGCTCTCCAGACTATGCTTATGGATCTGGTGGATTTCCTGCATGGGGGATACAACCTAATTCAGTTTTGGTTTTTGAGATTGAAGTCCTAAGCTTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

117

Amino Acids

12.52

Weight (kDa)

5.8

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 15 - 114 1.5e-22 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB1I GGYRCC 2 cut(s) 38, 49
AclWI GGATC 1 cut(s) 283
AcoI YGGCCR 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 198
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 3 cut(s) 53, 296, 346
AgeI ACCGGT 2 cut(s) 35, 46
AgsI TTSAA 2 cut(s) 157, 335
AjnI CCWGG 2 cut(s) 52, 133
AjuI GAANNNNNNNTTGG 2 cut(s) 186, 218
AluBI AGCT 2 cut(s) 153, 345
AluI AGCT 2 cut(s) 153, 345
Alw21I GWGCWC 2 cut(s) 125, 257
AlwI GGATC 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 2 cut(s) 139, 142
AsiGI ACCGGT 2 cut(s) 35, 46
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 130
AsuHPI GGTGA 2 cut(s) 58, 110
AvaII GGWCC 1 cut(s) 130
BalI TGGCCA 1 cut(s) 165
BanI GGYRCC 2 cut(s) 38, 49
Bbv12I GWGCWC 2 cut(s) 125, 257
BbvI GCAGC 2 cut(s) 151, 154
BciT130I CCWGG 2 cut(s) 54, 135
BciVI GTATCC 1 cut(s) 294
BfoI RGCGCY 1 cut(s) 30
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 2 cut(s) 140, 143
BlsI GCNGC 2 cut(s) 141, 144
Bme1390I CCNGG 2 cut(s) 54, 135
Bme18I GGWCC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 4 cut(s) 34, 40, 51, 132
BmrFI CCNGG 2 cut(s) 54, 135
BpmI CTGGAG 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BsaWI WCCGGW 2 cut(s) 35, 46
Bsc4I CCNNNNNNNGG 3 cut(s) 53, 296, 346
Bse118I RCCGGY 2 cut(s) 35, 46
Bse1I ACTGG 1 cut(s) 85
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 2 cut(s) 54, 135
BseDI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 3 cut(s) 53, 296, 346
BseMII CTCAG 2 cut(s) 14, 224
BseNI ACTGG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 151, 154
BsgI GTGCAG 1 cut(s) 61
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 2 cut(s) 38, 49
BshTI ACCGGT 2 cut(s) 35, 46
BsiHKAI GWGCWC 2 cut(s) 125, 257
BsiSI CCGG 2 cut(s) 36, 47
BslI CCNNNNNNNGG 3 cut(s) 53, 296, 346
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 1 cut(s) 165
Bsp1286I GDGCHC 2 cut(s) 125, 257
Bsp143I GATC 2 cut(s) 100, 275
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 15, 225
BspLI GGNNCC 4 cut(s) 34, 40, 51, 132
BspPI GGATC 1 cut(s) 283
BspT107I GGYRCC 2 cut(s) 38, 49
BsrFI RCCGGY 2 cut(s) 35, 46
BsrI ACTGG 1 cut(s) 85
BssAI RCCGGY 2 cut(s) 35, 46
BssECI CCNNGG 5 cut(s) 126, 133, 134, 166, 202
BssMI GATC 2 cut(s) 100, 275
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 3 cut(s) 126, 166, 202
Bst2UI CCWGG 2 cut(s) 54, 135
Bst4CI ACNGT 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 3 cut(s) 23, 233, 341
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 103, 278
BstMBI GATC 2 cut(s) 100, 275
BstNI CCWGG 2 cut(s) 54, 135
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 52, 133
BstV1I GCAGC 2 cut(s) 151, 154
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 2 cut(s) 73, 257
BtsIMutI CAGTG 3 cut(s) 73, 78, 257
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 2 cut(s) 35, 46
Cfr13I GGNCC 1 cut(s) 130
CseI GACGC 1 cut(s) 187
CspAI ACCGGT 2 cut(s) 35, 46
CviAII CATG 1 cut(s) 294
CviJI RGCY 5 cut(s) 145, 153, 165, 171, 345
CviKI_1 RGCY 5 cut(s) 145, 153, 165, 171, 345
DdeI CTNAG 3 cut(s) 23, 233, 341
DpnI GATC 2 cut(s) 102, 277
DpnII GATC 2 cut(s) 100, 275
EaeI YGGCCR 1 cut(s) 163
Eco130I CCWWGG 3 cut(s) 126, 166, 202
Eco47I GGWCC 1 cut(s) 130
Eco47III AGCGCT 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 130
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 2 cut(s) 52, 133
EcoT14I CCWWGG 3 cut(s) 126, 166, 202
ErhI CCWWGG 3 cut(s) 126, 166, 202
FaeI CATG 1 cut(s) 297
FaiI YATR 6 cut(s) 87, 179, 242, 267, 273, 295
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 140, 143
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 140, 143
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 140, 143
GsuI CTGGAG 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 1 cut(s) 165
HapII CCGG 2 cut(s) 36, 47
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 1 cut(s) 343
HpaII CCGG 2 cut(s) 36, 47
HphI GGTGA 2 cut(s) 58, 110
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 24, 111, 234
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 7, 188
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 4 cut(s) 78, 211, 250, 293
HpyF3I CTNAG 3 cut(s) 23, 233, 341
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 1 cut(s) 27
Kzo9I GATC 2 cut(s) 100, 275
LmnI GCTCC 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 151, 154
MaeIII GTNAC 1 cut(s) 64
MalI GATC 2 cut(s) 102, 277
MboI GATC 2 cut(s) 100, 275
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 125, 257
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 2 cut(s) 159, 310
MluNI TGGCCA 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 165
MscI TGGCCA 1 cut(s) 165
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 2 cut(s) 36, 47
MspR9I CCNGG 2 cut(s) 54, 135
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 54, 135
NdeII GATC 2 cut(s) 100, 275
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 4 cut(s) 34, 40, 51, 132
NmuCI GTSAC 1 cut(s) 64
PasI CCCWGGG 1 cut(s) 134
PctI GAATGC 1 cut(s) 213
PinAI ACCGGT 2 cut(s) 35, 46
PkrI GCNGC 2 cut(s) 141, 144
PpuMI RGGWCCY 1 cut(s) 130
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 52, 133
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 2 cut(s) 52, 133
PspN4I GGNNCC 4 cut(s) 34, 40, 51, 132
PspPI GGNCC 1 cut(s) 130
PspPPI RGGWCCY 1 cut(s) 130
PsuI RGATCY 1 cut(s) 275
SatI GCNGC 2 cut(s) 140, 143
Sau3AI GATC 2 cut(s) 100, 275
Sau96I GGNCC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 54, 135
SduI GDGCHC 2 cut(s) 125, 257
SetI ASST 5 cut(s) 58, 66, 155, 310, 347
SinI GGWCC 1 cut(s) 130
Sse9I AATT 2 cut(s) 159, 310
StyD4I CCNGG 2 cut(s) 52, 133
StyI CCWWGG 3 cut(s) 126, 166, 202
TaaI ACNGT 1 cut(s) 70
TasI AATT 2 cut(s) 159, 310
TscAI CASTG 3 cut(s) 80, 85, 257
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 139, 142
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 3 cut(s) 80, 85, 257
VpaK11BI GGWCC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.