FvH4_2g19700

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000965
Physical Location & Seq
Forward (+)
16651431 .. 16651868
438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19700.t1

Sequence Viewer

Length: 438 bp
ATGAGTAGTTTCAAGCTCTATGTGATTATGCTTGTGACTTTAGCAGTCTTAGCTTTGGCTATCCCATGTTCTGCTGAGACATGGGGGAAATGGCATGTTCACGTTGTCAATGGACTAAGCTCCAGAAGAACTCTCTTCGTCCATTGCAAGTCTAAAGACGATGATCTCGGCATCCATAATCTTGCAGTCGGTACCGAAACCAATTGGAGTTTTAGGGAGAACTTCATCGGGACAACACTTTTCTGGTGCTACATGCGCACAGACCGTGAAGAGTACGCCAGTTTTGATGTGTTCTGGGAGGAGCATGATCACAAGTGGCTTCAGACCAGATGCAACTGGAAAGATTGCATATGGACTGCAAGAGATGACGGGATTTACATAAAGAACATTCCCAACAACAGTGATGAGCTTATTCATAAGTGGGGATCTCACTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

146

Amino Acids

17.15

Weight (kDa)

6.21

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 32 - 141 3.9e-30 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 257
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AclWI GGATC 1 cut(s) 433
AcuI CTGAAG 1 cut(s) 305
AfaI GTAC 2 cut(s) 193, 275
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 4 cut(s) 16, 53, 120, 409
AluI AGCT 4 cut(s) 16, 53, 120, 409
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 1 cut(s) 433
Asp718I GGTACC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 258
BanI GGYRCC 1 cut(s) 191
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 71
BmiI GGNNCC 1 cut(s) 193
BmsI GCATC 2 cut(s) 180, 320
BpmI CTGGAG 1 cut(s) 106
Bse1I ACTGG 3 cut(s) 279, 341, 437
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 1 cut(s) 171
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 279, 341, 437
BseRI GAGGAG 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 191
BslFI GGGAC 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 163, 307, 425
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 142
BsrI ACTGG 3 cut(s) 279, 341, 437
BssMI GATC 3 cut(s) 163, 307, 425
Bst4CI ACNGT 2 cut(s) 266, 401
Bst6I CTCTTC 2 cut(s) 140, 264
BstDEI CTNAG 3 cut(s) 49, 75, 116
BstF5I GGATG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 3 cut(s) 166, 310, 428
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 163, 307, 425
BstMWI GCNNNNNNNGC 2 cut(s) 50, 255
BstNSI RCATGY 2 cut(s) 98, 256
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 406, 430
CfoI GCGC 1 cut(s) 258
Csp6I GTAC 2 cut(s) 192, 274
CviAII CATG 5 cut(s) 66, 81, 95, 253, 305
CviJI RGCY 6 cut(s) 16, 53, 59, 120, 319, 409
CviKI_1 RGCY 6 cut(s) 16, 53, 59, 120, 319, 409
CviQI GTAC 2 cut(s) 192, 274
DdeI CTNAG 3 cut(s) 49, 75, 116
DpnI GATC 3 cut(s) 165, 309, 427
DpnII GATC 3 cut(s) 163, 307, 425
Eam1104I CTCTTC 2 cut(s) 140, 264
EarI CTCTTC 2 cut(s) 140, 264
Eco57I CTGAAG 1 cut(s) 305
FaeI CATG 5 cut(s) 69, 84, 98, 256, 308
FaqI GGGAC 1 cut(s) 244
FatI CATG 5 cut(s) 65, 80, 94, 252, 304
FauNDI CATATG 1 cut(s) 350
FbaI TGATCA 1 cut(s) 307
FokI GGATG 1 cut(s) 158
FspAI RTGCGCAY 1 cut(s) 257
FspI TGCGCA 1 cut(s) 257
GlaI GCGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 106
HhaI GCGC 1 cut(s) 258
Hin1II CATG 5 cut(s) 69, 84, 98, 256, 308
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 123, 229
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 266, 401
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 5 cut(s) 147, 185, 333, 348, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 50, 255
HpyF3I CTNAG 3 cut(s) 49, 75, 116
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 5 cut(s) 69, 84, 98, 256, 308
HspAI GCGC 1 cut(s) 256
KpnI GGTACC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 3 cut(s) 163, 307, 425
LmnI GCTCC 2 cut(s) 125, 301
LpnPI CCDG 7 cut(s) 136, 229, 280, 292, 322, 340, 418
LweI GCATC 2 cut(s) 180, 320
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 165, 309, 427
MboI GATC 3 cut(s) 163, 307, 425
MboII GAAGA 3 cut(s) 127, 138, 281
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 1 cut(s) 425
MluCI AATT 1 cut(s) 202
MnlI CCTC 1 cut(s) 292
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 2 cut(s) 50, 255
NdeI CATATG 1 cut(s) 350
NdeII GATC 3 cut(s) 163, 307, 425
NlaIII CATG 5 cut(s) 69, 84, 98, 256, 308
NlaIV GGNNCC 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 34
NsbI TGCGCA 1 cut(s) 257
NspI RCATGY 2 cut(s) 98, 256
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 425
RsaI GTAC 2 cut(s) 193, 275
RsaNI GTAC 2 cut(s) 192, 274
Sau3AI GATC 3 cut(s) 163, 307, 425
SetI ASST 5 cut(s) 18, 55, 105, 122, 411
SfaNI GCATC 2 cut(s) 180, 320
Sse9I AATT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 266, 401
TaiI ACGT 1 cut(s) 105
TasI AATT 1 cut(s) 202
TscAI CASTG 2 cut(s) 406, 437
TseFI GTSAC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 214, 404
TspRI CASTG 2 cut(s) 406, 437
XceI RCATGY 2 cut(s) 98, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.