Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

19405536 .. 19406024

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G208400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACTATATTTCCTTTCAGTTTCAAACCCAATTACGTGGTTTTCTTTGTGTTTGCTGCAATATTTTTAGCAGCCTTGGCTCTCCCATATCATGCAAACTCAGCTAATCAGACCAACTTGGGTTATCCGATAAATAAATGGGTTGTTCATGTCGTTAATCAAATGGGGGCTTCAAAAACGTTGGTAGCTCATTGTAAATCCAAGGACGACGATCTGGGAATCCGTGACGTTCTGCCCGGGAATGAGTTCAACTGGGGTTTCAAAGAGAACTTCGGTGGAACAACGCTTTTCTGGTGCAACATCCACAACAACCATCAACACGCTAATTTTCAGGTGTTTTGGCATGAGGATGAGTCTAAGAGCAGTTGGCTTCACTACAGATGCAACTGGAAAGAGTGCTTTTGGGTTGCTAAAGATGATGGGATTTACATCAGAAACACTCCTGAAGGCCGTGACGAGCTTCAGCATCAATGGGAACCAGGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

163

Amino Acids

18.95

Weight (kDa)

6.28

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	446, 465
AgsI	TTSAA	4 cut(s)	25, 174, 250, 262
AjnI	CCWGG	1 cut(s)	478
AluBI	AGCT	3 cut(s)	104, 188, 460
AluI	AGCT	3 cut(s)	104, 188, 460
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	56, 71
Asp700I	GAANNNNTTC	1 cut(s)	245
AsuC2I	CCSGG	2 cut(s)	237, 238
AvaI	CYCGRG	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	43, 83
BccI	CCATC	2 cut(s)	321, 413
BceAI	ACGGC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	480
BcnI	CCSGG	2 cut(s)	237, 238
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	57, 72
BlsI	GCNGC	2 cut(s)	58, 73
Bme1390I	CCNGG	3 cut(s)	237, 238, 480
BmeT110I	CYCGRG	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	3 cut(s)	237, 238, 480
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	2 cut(s)	371, 475
BmuI	ACTGGG	1 cut(s)	262
BpuMI	CCSGG	2 cut(s)	237, 238
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	428
BsaJI	CCNNGG	4 cut(s)	75, 201, 236, 479
Bse1I	ACTGG	2 cut(s)	257, 392
Bse8I	GATNNNNATC	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	480
BseDI	CCNNGG	4 cut(s)	75, 201, 236, 479
BseGI	GGATG	2 cut(s)	300, 355
BseJI	GATNNNNATC	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	257, 392
BseXI	GCAGC	2 cut(s)	43, 83
BshFI	GGCC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	1 cut(s)	237
BsnI	GGCC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	236
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	450
BspCNI	CTCAG	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	477
BsrI	ACTGG	2 cut(s)	257, 392
BssECI	CCNNGG	4 cut(s)	75, 201, 236, 479
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	75, 201
Bst2UI	CCWGG	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	37
BstDEI	CTNAG	2 cut(s)	100, 357
BstF5I	GGATG	2 cut(s)	300, 355
BstKTI	GATC	1 cut(s)	214
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 101
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	3 cut(s)	235, 236, 478
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	43, 83
BstXI	CCANNNNNNTGG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	300, 355
Cfr9I	CCCGGG	1 cut(s)	236
CviAII	CATG	3 cut(s)	92, 149, 344
CviJI	RGCY	8 cut(s)	74, 80, 104, 170, 188, 370, 450, 460
CviKI_1	RGCY	8 cut(s)	74, 80, 104, 170, 188, 370, 450, 460
DdeI	CTNAG	2 cut(s)	100, 357
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco130I	CCWWGG	2 cut(s)	75, 201
Eco57I	CTGAAG	2 cut(s)	446, 465
Eco88I	CYCGRG	1 cut(s)	236
EcoRII	CCWGG	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	75, 201
ErhI	CCWWGG	2 cut(s)	75, 201
FaeI	CATG	3 cut(s)	95, 152, 347
FaiI	YATR	5 cut(s)	8, 88, 93, 150, 345
FatI	CATG	3 cut(s)	91, 148, 343
Fnu4HI	GCNGC	2 cut(s)	57, 72
FokI	GGATG	2 cut(s)	287, 362
Fsp4HI	GCNGC	2 cut(s)	57, 72
GluI	GCNGC	2 cut(s)	57, 72
HaeIII	GGCC	1 cut(s)	450
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	3 cut(s)	95, 152, 347
HinfI	GANTC	2 cut(s)	219, 353
HpaII	CCGG	1 cut(s)	237
Hpy188I	TCNGA	3 cut(s)	111, 129, 434
Hpy188III	TCNNGA	1 cut(s)	443
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	440
HpyCH4IV	ACGT	3 cut(s)	36, 179, 228
HpyCH4V	TGCA	4 cut(s)	59, 95, 297, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 101
HpyF3I	CTNAG	2 cut(s)	100, 357
HpySE526I	ACGT	3 cut(s)	36, 179, 228
Hsp92II	CATG	3 cut(s)	95, 152, 347
Kzo9I	GATC	1 cut(s)	211
LpnPI	CCDG	8 cut(s)	200, 238, 250, 277, 317, 373, 456, 465
Lsp1109I	GCAGC	2 cut(s)	43, 83
LweI	GCATC	2 cut(s)	371, 475
MaeII	ACGT	3 cut(s)	36, 179, 228
MaeIII	GTNAC	2 cut(s)	224, 452
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MluCI	AATT	2 cut(s)	31, 325
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	1 cut(s)	340
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	3 cut(s)	237, 238, 480
MvaI	CCWGG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	77, 101
NciI	CCSGG	2 cut(s)	237, 238
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	95, 152, 347
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	2 cut(s)	224, 452
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	58, 73
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
Ppu21I	YACGTR	1 cut(s)	37
Psp1406I	AACGTT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	57, 72
Sau3AI	GATC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	237, 238, 480
SetI	ASST	7 cut(s)	39, 106, 182, 190, 231, 336, 462
SfaNI	GCATC	2 cut(s)	371, 475
SfcI	CTRYAG	1 cut(s)	376
SmaI	CCCGGG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	31, 325
SspI	AATATT	1 cut(s)	63
StyD4I	CCNGG	3 cut(s)	235, 236, 478
StyI	CCWWGG	2 cut(s)	75, 201
TaiI	ACGT	3 cut(s)	39, 182, 231
TasI	AATT	2 cut(s)	31, 325
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	2 cut(s)	224, 452
TseI	GCWGC	2 cut(s)	56, 71
Tsp45I	GTSAC	2 cut(s)	224, 452
TspDTI	ATGAA	1 cut(s)	137
TspGWI	ACGGA	1 cut(s)	212
TspMI	CCCGGG	1 cut(s)	236
XmaI	CCCGGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.