RchiOBHm_Chr5g0039321

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000965
Physical Location & Seq
Forward (+)
33981971 .. 33982399
429 bp
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UTR
Exon/CDS
Intron
PRQ31789

Sequence Viewer

Length: 429 bp
ATGAGTGGTTTCAAGCTCTATGTGGTTGCGCTTGTGTCTTTAACATTCTTAGCCTTGACTATCCCATGTTCTGCTGTGACGTGGCATGTTCACATCGTCAATGGACTGAGCTCTGGAAGAATTCTCTTCGTCCATTGCAAGTCTAAAGATAATGATCTCGGCATCCATAATCTTGCAGTCGGAACCGAAACCACTTGGAGTTTCAAAGAAAACTTCATAGGGACAACACTTTTTTGGTGCTACCTGCGCACAGACCGTGAAGAGTATGCTGATTTTGATGTGTTCTGGTCGGAGCATAATCGCAAGTGGCTTCAGACCAGATGCAACTGGAAAGATTGCATATGGACCGCAAGAGATGACGGGGTTTACATAAAGAACATTCCTAACAACAGTGATGAGCTTATTCATCAATGGGGAACGCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

142

Amino Acids

16.61

Weight (kDa)

6.35

Isoelectric Point (pI)

23.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 138 1.1e-29 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 252
AciI CCGC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 296
AgsI TTSAA 2 cut(s) 13, 205
AjiI CACGTC 1 cut(s) 81
AluBI AGCT 3 cut(s) 16, 111, 400
AluI AGCT 3 cut(s) 16, 111, 400
Alw21I GWGCWC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 2 cut(s) 31, 249
AspS9I GGNCC 1 cut(s) 345
AvaII GGWCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 345
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 345
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 2 cut(s) 171, 311
BsaBI GATNNNNATC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 133
Bse8I GATNNNNATC 1 cut(s) 153
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 153
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 332
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 2 cut(s) 257, 392
Bst6I CTCTTC 2 cut(s) 131, 255
BstDEI CTNAG 2 cut(s) 49, 107
BstF5I GGATG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 31, 249
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 89
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 31, 249
Cfr13I GGNCC 1 cut(s) 345
CviAII CATG 2 cut(s) 66, 86
CviJI RGCY 5 cut(s) 16, 53, 111, 310, 400
CviKI_1 RGCY 5 cut(s) 16, 53, 111, 310, 400
DdeI CTNAG 2 cut(s) 49, 107
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 131, 255
EarI CTCTTC 2 cut(s) 131, 255
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 2 cut(s) 69, 89
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 65, 85
FauNDI CATATG 1 cut(s) 341
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 113
FspI TGCGCA 1 cut(s) 248
GlaI GCGC 2 cut(s) 30, 248
HhaI GCGC 2 cut(s) 31, 249
Hin1II CATG 2 cut(s) 69, 89
Hin6I GCGC 2 cut(s) 29, 247
HinP1I GCGC 2 cut(s) 29, 247
Hpy166II GTNNAC 2 cut(s) 91, 367
Hpy188I TCNGA 3 cut(s) 182, 292, 315
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 91, 367
HpyCH4III ACNGT 2 cut(s) 257, 392
HpyCH4IV ACGT 1 cut(s) 80
HpyCH4V TGCA 4 cut(s) 138, 176, 324, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 49, 107
HpySE526I ACGT 1 cut(s) 80
Hsp92II CATG 2 cut(s) 69, 89
HspAI GCGC 2 cut(s) 29, 247
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 5 cut(s) 99, 257, 271, 313, 331
LweI GCATC 2 cut(s) 171, 311
MaeII ACGT 1 cut(s) 80
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 3 cut(s) 118, 129, 272
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 1 cut(s) 120
MmeI TCCRAC 2 cut(s) 160, 270
MseI TTAA 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 341
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 69, 89
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 76
NsbI TGCGCA 1 cut(s) 248
NspI RCATGY 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 1 cut(s) 345
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 41
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 345
SduI GDGCHC 1 cut(s) 113
SetI ASST 5 cut(s) 18, 83, 113, 246, 402
SfaNI GCATC 2 cut(s) 171, 311
SinI GGWCC 1 cut(s) 345
Sse9I AATT 1 cut(s) 120
SsiI CCGC 1 cut(s) 348
SstI GAGCTC 1 cut(s) 113
TaaI ACNGT 2 cut(s) 257, 392
TaiI ACGT 1 cut(s) 83
TasI AATT 1 cut(s) 120
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 205, 395
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 345
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.