Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002520.1

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

26652 .. 28919

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002520.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgagcattagtatgaagcactctattgttttgttaatctctttggcaatactctcagccttgattggtcgtggaaatgctgccgagaacaatatccacgtgccgggtgtcgacaggtggtacgtgcacgtcgtcaatggactcgggggaggtagatggctcttcgttcattgccggtccaaagacgacgatctcggaactcatgatctagcaacagggaaggagttttggtgggcgttcaagacaagctatttcgggcgcacacttttctggtgctacctgcggaccgacgaagccaccaacaaacaacatgctacttttgatgcgttttggcatgagaagcaccatttttggcttttggatcattgtggcaatgaagaaaggaattgcatctggactgcaaaagatgatgggatttacttgaaaatcaattctaaaaatgttgatgactttattcataaatgggaaccagtccaagacgccaatctcggcttccggcaaggcgtccccggaagcttctccaatctcggtgatcatccggtcggctatgttgcggaggtcaatcactgcatcggaggggatgagatcgagctcccggatgctactggtggacctgtagttcgaggtgttcgaagtggtggctggaggaggaggagctgggattggcgagggagtctggctagatgggggaggtgtcgtctttctgacttcgacgaggagagagagagagagagagagtcgtgctggagatttgagtggcataaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

256

Amino Acids

29.62

Weight (kDa)

6.53

Isoelectric Point (pI)

46.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	288
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	2 cut(s)	283, 554
AclWI	GGATC	1 cut(s)	369
AcvI	CACGTG	1 cut(s)	100
AcyI	GRCGYC	2 cut(s)	480, 504
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	2 cut(s)	241, 424
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AloI	GAACNNNNNNTCC	2 cut(s)	603, 635
AluBI	AGCT	4 cut(s)	249, 516, 592, 657
AluI	AGCT	4 cut(s)	249, 516, 592, 657
Alw21I	GWGCWC	2 cut(s)	129, 594
Alw44I	GTGCAC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	143
ApaLI	GTGCAC	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	603, 635
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	177, 285, 611
AsuC2I	CCSGG	3 cut(s)	105, 510, 596
AsuHPI	GGTGA	1 cut(s)	542
AsuII	TTCGAA	1 cut(s)	631
AvaI	CYCGRG	1 cut(s)	143
AvaII	GGWCC	3 cut(s)	177, 285, 611
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	100
Bbv12I	GWGCWC	2 cut(s)	129, 594
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	3 cut(s)	150, 404, 678
BclI	TGATCA	1 cut(s)	532
BcnI	CCSGG	3 cut(s)	105, 510, 596
BfaI	CTAG	2 cut(s)	209, 681
BfmI	CTRYAG	1 cut(s)	615
BfuAI	ACCTGC	1 cut(s)	288
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	3 cut(s)	105, 510, 596
Bme18I	GGWCC	3 cut(s)	177, 285, 611
BmeT110I	CYCGRG	1 cut(s)	143
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	3 cut(s)	177, 285, 611
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	105, 510, 596
BmsI	GCATC	4 cut(s)	313, 399, 579, 589
BpmI	CTGGAG	2 cut(s)	664, 766
Bpu14I	TTCGAA	1 cut(s)	631
BpuMI	CCSGG	3 cut(s)	105, 510, 596
BsaAI	YACGTR	2 cut(s)	100, 124
BsaHI	GRCGYC	2 cut(s)	480, 504
BsaJI	CCNNGG	1 cut(s)	508
BsaWI	WCCGGW	1 cut(s)	538
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 682, 712
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse118I	RCCGGY	1 cut(s)	174
Bse1I	ACTGG	2 cut(s)	470, 610
Bse3DI	GCAATG	2 cut(s)	169, 379
BseDI	CCNNGG	1 cut(s)	508
BseGI	GGATG	3 cut(s)	535, 586, 604
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	2 cut(s)	169, 379
BseMII	CTCAG	1 cut(s)	69
BseNI	ACTGG	2 cut(s)	470, 610
BseRI	GAGGAG	4 cut(s)	661, 664, 667, 731
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	543
BsiEI	CGRYCG	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	129, 594
BsiHKCI	CYCGRG	1 cut(s)	143
BsiSI	CCGG	6 cut(s)	104, 175, 496, 510, 539, 596
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	631
Bsp1286I	GDGCHC	2 cut(s)	129, 594
Bsp143I	GATC	5 cut(s)	190, 205, 361, 532, 585
BspACI	CCGC	2 cut(s)	283, 554
BspCNI	CTCAG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	369
BspQI	GCTCTTC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	631
BsrDI	GCAATG	2 cut(s)	169, 379
BsrFI	RCCGGY	1 cut(s)	174
BsrI	ACTGG	2 cut(s)	470, 610
BssAI	RCCGGY	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	5 cut(s)	190, 205, 361, 532, 585
BssNI	GRCGYC	2 cut(s)	480, 504
Bst6I	CTCTTC	1 cut(s)	167
BstACI	GRCGYC	2 cut(s)	480, 504
BstBAI	YACGTR	2 cut(s)	100, 124
BstBI	TTCGAA	1 cut(s)	631
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	3 cut(s)	535, 586, 604
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	5 cut(s)	193, 208, 364, 535, 588
BstMBI	GATC	5 cut(s)	190, 205, 361, 532, 585
BstMCI	CGRYCG	1 cut(s)	543
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	103, 508, 594
BstSFI	CTRYAG	1 cut(s)	615
BstSLI	GKGCMC	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	3 cut(s)	535, 586, 604
BtsI	GCAGTG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	288
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	174
Cfr13I	GGNCC	3 cut(s)	177, 285, 611
CpoI	CGGWCCG	1 cut(s)	285
CseI	GACGC	2 cut(s)	488, 493
Csp6I	GTAC	1 cut(s)	121
CspI	CGGWCCG	1 cut(s)	285
CviAII	CATG	3 cut(s)	203, 311, 335
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	5 cut(s)	192, 207, 363, 534, 587
DpnII	GATC	5 cut(s)	190, 205, 361, 532, 585
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	3 cut(s)	177, 285, 611
Eco53kI	GAGCTC	1 cut(s)	592
Eco72I	CACGTG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	594
FaeI	CATG	3 cut(s)	206, 314, 338
FaiI	YATR	8 cut(s)	14, 204, 312, 336, 459, 549, 762, 769
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	3 cut(s)	202, 310, 334
FbaI	TGATCA	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	81
FokI	GGATG	3 cut(s)	522, 593, 611
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	2 cut(s)	209, 681
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	2 cut(s)	664, 766
HapII	CCGG	6 cut(s)	104, 175, 496, 510, 539, 596
HgaI	GACGC	2 cut(s)	488, 493
HhaI	GCGC	1 cut(s)	261
Hin1I	GRCGYC	2 cut(s)	480, 504
Hin1II	CATG	3 cut(s)	206, 314, 338
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	514
HinfI	GANTC	3 cut(s)	141, 673, 737
HpaII	CCGG	6 cut(s)	104, 175, 496, 510, 539, 596
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	3 cut(s)	112, 127, 611
Hpy188I	TCNGA	3 cut(s)	197, 575, 706
Hpy188III	TCNNGA	3 cut(s)	203, 241, 394
Hpy8I	GTNNAC	3 cut(s)	112, 127, 611
Hpy99I	CGWCG	4 cut(s)	134, 191, 293, 716
HpyAV	CCTTC	1 cut(s)	214
HpyCH4IV	ACGT	3 cut(s)	99, 123, 129
HpyCH4V	TGCA	4 cut(s)	127, 390, 401, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	3 cut(s)	99, 123, 129
Hsp92I	GRCGYC	2 cut(s)	480, 504
Hsp92II	CATG	3 cut(s)	206, 314, 338
HspAI	GCGC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	5 cut(s)	190, 205, 361, 532, 585
LguI	GCTCTTC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	597, 654
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	4 cut(s)	313, 399, 579, 589
MaeI	CTAG	2 cut(s)	209, 681
MaeII	ACGT	3 cut(s)	99, 123, 129
MalI	GATC	5 cut(s)	192, 207, 363, 534, 587
MboI	GATC	5 cut(s)	190, 205, 361, 532, 585
MboII	GAAGA	2 cut(s)	154, 389
MhlI	GDGCHC	2 cut(s)	129, 594
MluCI	AATT	2 cut(s)	385, 430
MlyI	GAGTC	3 cut(s)	135, 682, 746
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	6 cut(s)	104, 175, 496, 510, 539, 596
MspR9I	CCNGG	3 cut(s)	105, 510, 596
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	3 cut(s)	105, 510, 596
NdeII	GATC	5 cut(s)	190, 205, 361, 532, 585
NlaIII	CATG	3 cut(s)	206, 314, 338
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	2 cut(s)	109, 468
NspI	RCATGY	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	631
PagI	TCATGA	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 628
PfoI	TCCNGGA	1 cut(s)	594
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	3 cut(s)	135, 681, 745
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
PpsI	GAGTC	3 cut(s)	135, 681, 745
Ppu21I	YACGTR	2 cut(s)	100, 124
Psp124BI	GAGCTC	1 cut(s)	594
PspCI	CACGTG	1 cut(s)	100
PspFI	CCCAGC	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	3 cut(s)	177, 285, 611
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	11
Rsr2I	CGGWCCG	1 cut(s)	285
RsrII	CGGWCCG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	5 cut(s)	190, 205, 361, 532, 585
Sau96I	GGNCC	3 cut(s)	177, 285, 611
SchI	GAGTC	3 cut(s)	135, 682, 746
ScrFI	CCNGG	3 cut(s)	105, 510, 596
SduI	GDGCHC	2 cut(s)	129, 594
SfaNI	GCATC	4 cut(s)	313, 399, 579, 589
SfcI	CTRYAG	1 cut(s)	615
SfuI	TTCGAA	1 cut(s)	631
SinI	GGWCC	3 cut(s)	177, 285, 611
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	385, 430
SsiI	CCGC	2 cut(s)	283, 554
SspMI	CTAG	2 cut(s)	209, 681
SstI	GAGCTC	1 cut(s)	594
StyD4I	CCNGG	3 cut(s)	103, 508, 594
TaiI	ACGT	3 cut(s)	102, 126, 132
TaqI	TCGA	5 cut(s)	111, 588, 622, 631, 711
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	2 cut(s)	385, 430
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TscAI	CASTG	1 cut(s)	572
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	4 cut(s)	29, 158, 390, 446
TspRI	CASTG	1 cut(s)	572
VneI	GTGCAC	1 cut(s)	125
VpaK11BI	GGWCC	3 cut(s)	177, 285, 611
XceI	RCATGY	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	2 cut(s)	209, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.