Rh6BG300800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000965
Physical Location & Seq
Reverse (-)
53011347 .. 53011679
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG300800.1

Sequence Viewer

Length: 333 bp
ATGAGCATTAGTATGAAGCACTCTATTGTTTTGTTAATCTCTTTGGGAATACTCTCAGCCTTGAGTGGTCGTGGAAATGCTGCCGAGAACAATATCCACGTGCCGGGTGTCGACAGGTGGTACGTGCACGGCGTCAATGGACTCGGGGGAGGTAGATGGCATGGCTCTTCGTTCATTGCCAGTCCAAAGACGACGATCTCGATCGGAACTCATGATCTAGCAACAGGGAAGGAGTTTTGGTGGACGTTCAAGACTAGACTATTTCGGGCGCACACTTTTCTGGTGCTACCTGCGCAACGTCGAAGCCACCAACAAAGAACATGCTACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

10.94

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 294
Acc36I ACCTGC 1 cut(s) 298
AccI GTMKAC 1 cut(s) 111
AcvI CACGTG 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 1 cut(s) 250
Alw21I GWGCWC 1 cut(s) 129
Alw44I GTGCAC 1 cut(s) 125
Ama87I CYCGRG 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 2 cut(s) 271, 295
AsuC2I CCSGG 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 143
BaeGI GKGCMC 1 cut(s) 129
BbrPI CACGTG 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 145
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 2 cut(s) 218, 255
BfuAI ACCTGC 1 cut(s) 298
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 105
BsaAI YACGTR 2 cut(s) 100, 124
BsaBI GATNNNNATC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 200
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 180
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 204
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 3 cut(s) 195, 201, 214
BspCNI CTCAG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 211
BspMI ACCTGC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 1 cut(s) 180
BssMI GATC 3 cut(s) 195, 201, 214
BssNI GRCGYC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 132
BstBAI YACGTR 2 cut(s) 100, 124
BstDEI CTNAG 1 cut(s) 55
BstHHI GCGC 2 cut(s) 271, 295
BstKTI GATC 3 cut(s) 198, 204, 217
BstMBI GATC 3 cut(s) 195, 201, 214
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstNSI RCATGY 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 67
BveI ACCTGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 211
CfoI GCGC 2 cut(s) 271, 295
CseI GACGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 121
CviAII CATG 3 cut(s) 161, 212, 321
CviJI RGCY 3 cut(s) 59, 165, 306
CviKI_1 RGCY 3 cut(s) 59, 165, 306
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 55
DpnI GATC 3 cut(s) 197, 203, 216
DpnII GATC 3 cut(s) 195, 201, 214
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco72I CACGTG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 143
FaeI CATG 3 cut(s) 164, 215, 324
FaiI YATR 4 cut(s) 14, 162, 213, 322
FatI CATG 3 cut(s) 160, 211, 320
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 218, 255
FspI TGCGCA 1 cut(s) 294
GlaI GCGC 2 cut(s) 270, 294
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 121
HhaI GCGC 2 cut(s) 271, 295
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 3 cut(s) 164, 215, 324
Hin6I GCGC 2 cut(s) 269, 293
HinP1I GCGC 2 cut(s) 269, 293
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 3 cut(s) 112, 127, 243
Hpy188I TCNGA 1 cut(s) 206
Hpy188III TCNNGA 3 cut(s) 199, 212, 250
Hpy8I GTNNAC 3 cut(s) 112, 127, 243
Hpy99I CGWCG 2 cut(s) 196, 303
HpyAV CCTTC 1 cut(s) 223
HpyCH4IV ACGT 4 cut(s) 99, 123, 245, 298
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 4 cut(s) 99, 123, 245, 298
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 3 cut(s) 164, 215, 324
HspAI GCGC 2 cut(s) 269, 293
Kzo9I GATC 3 cut(s) 195, 201, 214
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 100, 117, 193, 210, 266, 303
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 2 cut(s) 218, 255
MaeII ACGT 4 cut(s) 99, 123, 245, 298
MalI GATC 3 cut(s) 197, 203, 216
MboI GATC 3 cut(s) 195, 201, 214
MboII GAAGA 1 cut(s) 159
MhlI GDGCHC 1 cut(s) 129
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 105
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 195, 201, 214
NlaIII CATG 3 cut(s) 164, 215, 324
NmeAIII GCCGAG 1 cut(s) 109
NsbI TGCGCA 1 cut(s) 294
NspI RCATGY 1 cut(s) 324
PagI TCATGA 1 cut(s) 211
PciSI GCTCTTC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 197
PkrI GCNGC 1 cut(s) 82
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 100
PmlI CACGTG 1 cut(s) 100
PpsI GAGTC 1 cut(s) 135
Ppu21I YACGTR 2 cut(s) 100, 124
PspCI CACGTG 1 cut(s) 100
PvuI CGATCG 1 cut(s) 204
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 11
SalI GTCGAC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 195, 201, 214
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 129
SetI ASST 7 cut(s) 102, 119, 126, 154, 248, 292, 301
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SspMI CTAG 2 cut(s) 218, 255
StyD4I CCNGG 1 cut(s) 103
TaiI ACGT 4 cut(s) 102, 126, 248, 301
TaqI TCGA 3 cut(s) 111, 200, 301
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 29, 163
VneI GTGCAC 1 cut(s) 125
XceI RCATGY 1 cut(s) 324
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 2 cut(s) 218, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.