Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000199.1

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

88547 .. 88990

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000199.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgagagatctcaaaggcattgccgttttctatttgtgtgtagctttagccctaagtatctacccaggatcctctgccaaagcgcctggtcttgatcccaccgactggcatgtgcacgtcgttaacggtttcagtgggcgaagagcactggtggtccactgtaagtccgacgtcaacgatctcggcacccatactctttatcctggtggcgacttcaattggaatttccatgtcaacttgcccgggtcaacgcgtttcacttgcgacttccatgcagacaaacaacacgcttcatttgatgtgttttggaaggagagtcaacatatgtggctccggaccagatgcaattggaaagcgtgcttttggactgcgaaagatgatgggatttacctcaaaaacgttccagagaatcgtgacgagcgtattcatccatgggaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

147

Amino Acids

16.91

Weight (kDa)

7.11

Isoelectric Point (pI)

27.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccII	CGCG	1 cut(s)	253
AccIII	TCCGGA	1 cut(s)	333
AclI	AACGTT	1 cut(s)	399
AclWI	GGATC	3 cut(s)	63, 76, 89
AcsI	RAATTY	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	171
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	3 cut(s)	64, 85, 202
AluBI	AGCT	1 cut(s)	44
AluI	AGCT	1 cut(s)	44
Alw21I	GWGCWC	2 cut(s)	117, 148
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	63, 76, 89
Ama87I	CYCGRG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	333
ApaLI	GTGCAC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	2 cut(s)	154, 336
AsuC2I	CCSGG	2 cut(s)	243, 244
AvaI	CYCGRG	1 cut(s)	242
AvaII	GGWCC	2 cut(s)	154, 336
BaeGI	GKGCMC	1 cut(s)	117
BamHI	GGATCC	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	117, 148
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	3 cut(s)	66, 87, 204
BcnI	CCSGG	2 cut(s)	243, 244
BfoI	RGCGCY	1 cut(s)	86
BglII	AGATCT	1 cut(s)	7
Bme1390I	CCNGG	5 cut(s)	66, 87, 204, 243, 244
Bme18I	GGWCC	2 cut(s)	154, 336
BmeT110I	CYCGRG	1 cut(s)	242
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	154, 336
BmiI	GGNNCC	3 cut(s)	70, 187, 332
BmrFI	CCNGG	5 cut(s)	66, 87, 204, 243, 244
BmsI	GCATC	1 cut(s)	332
BpuMI	CCSGG	2 cut(s)	243, 244
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	3 cut(s)	64, 242, 431
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	110, 153
Bse3DI	GCAATG	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	333
BseBI	CCWGG	3 cut(s)	66, 87, 204
BseDI	CCNNGG	3 cut(s)	64, 242, 431
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	110, 153
BseSI	GKGCMC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	253
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	2 cut(s)	117, 148
BsiHKCI	CYCGRG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	243, 334
BslI	CCNNNNNNNGG	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	242
Bsp1286I	GDGCHC	2 cut(s)	117, 148
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	4 cut(s)	7, 68, 94, 178
Bsp19I	CCATGG	1 cut(s)	431
BspEI	TCCGGA	1 cut(s)	333
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	70, 187, 332
BspPI	GGATC	3 cut(s)	63, 76, 89
BspQI	GCTCTTC	1 cut(s)	136
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	110, 153
BssECI	CCNNGG	3 cut(s)	64, 242, 431
BssMI	GATC	4 cut(s)	7, 68, 94, 178
BssNI	GRCGYC	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	3 cut(s)	66, 87, 204
Bst4CI	ACNGT	2 cut(s)	128, 161
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	4 cut(s)	10, 71, 97, 181
BstMBI	GATC	4 cut(s)	7, 68, 94, 178
BstNI	CCWGG	3 cut(s)	66, 87, 204
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	5 cut(s)	64, 85, 202, 241, 242
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	253
BstX2I	RGATCY	2 cut(s)	7, 68
BstYI	RGATCY	2 cut(s)	7, 68
BtgI	CCRYGG	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	427
BtsIMutI	CAGTG	3 cut(s)	139, 146, 157
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	154, 336
Cfr9I	CCCGGG	1 cut(s)	242
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	5 cut(s)	110, 230, 272, 432, 441
CviJI	RGCY	3 cut(s)	44, 50, 331
CviKI_1	RGCY	3 cut(s)	44, 50, 331
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	4 cut(s)	9, 70, 96, 180
DpnII	GATC	4 cut(s)	7, 68, 94, 178
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	154, 336
Eco88I	CYCGRG	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	64, 85, 202
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	113, 233, 275, 435, 444
FaiI	YATR	8 cut(s)	111, 192, 231, 273, 324, 326, 433, 442
FatI	CATG	5 cut(s)	109, 229, 271, 431, 440
FauNDI	CATATG	1 cut(s)	324
FokI	GGATG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	2 cut(s)	243, 334
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	113, 233, 275, 435, 444
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	5 cut(s)	124, 175, 235, 249, 320
HindII	GTYRAC	5 cut(s)	124, 175, 235, 249, 320
HinfI	GANTC	2 cut(s)	316, 409
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	2 cut(s)	243, 334
Hpy166II	GTNNAC	7 cut(s)	115, 124, 157, 175, 235, 249, 320
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	4 cut(s)	92, 334, 404, 413
Hpy8I	GTNNAC	7 cut(s)	115, 124, 157, 175, 235, 249, 320
Hpy99I	CGWCG	2 cut(s)	122, 173
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	2 cut(s)	128, 161
HpyCH4IV	ACGT	3 cut(s)	117, 171, 399
HpyCH4V	TGCA	3 cut(s)	115, 275, 345
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	3 cut(s)	117, 171, 399
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	5 cut(s)	113, 233, 275, 435, 444
HspAI	GCGC	1 cut(s)	83
Kpn2I	TCCGGA	1 cut(s)	333
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	7, 68, 94, 178
LguI	GCTCTTC	1 cut(s)	136
LmnI	GCTCC	1 cut(s)	336
LweI	GCATC	1 cut(s)	332
MaeII	ACGT	3 cut(s)	117, 171, 399
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	4 cut(s)	9, 70, 96, 180
MboI	GATC	4 cut(s)	7, 68, 94, 178
MboII	GAAGA	1 cut(s)	153
MfeI	CAATTG	2 cut(s)	217, 346
MflI	RGATCY	2 cut(s)	7, 68
MhlI	GDGCHC	2 cut(s)	117, 148
MluCI	AATT	3 cut(s)	217, 223, 346
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	2 cut(s)	82, 401
MroI	TCCGGA	1 cut(s)	333
MseI	TTAA	1 cut(s)	123
MspI	CCGG	2 cut(s)	243, 334
MspR9I	CCNGG	5 cut(s)	66, 87, 204, 243, 244
MunI	CAATTG	2 cut(s)	217, 346
MvaI	CCWGG	3 cut(s)	66, 87, 204
MvnI	CGCG	1 cut(s)	253
NciI	CCSGG	2 cut(s)	243, 244
NcoI	CCATGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	4 cut(s)	7, 68, 94, 178
NlaIII	CATG	5 cut(s)	113, 233, 275, 435, 444
NlaIV	GGNNCC	3 cut(s)	70, 187, 332
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	105
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Psp1406I	AACGTT	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	64, 85, 202
PspGI	CCWGG	3 cut(s)	64, 85, 202
PspN4I	GGNNCC	3 cut(s)	70, 187, 332
PspPI	GGNCC	2 cut(s)	154, 336
PsuI	RGATCY	2 cut(s)	7, 68
SapI	GCTCTTC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	123
Sau3AI	GATC	4 cut(s)	7, 68, 94, 178
Sau96I	GGNCC	2 cut(s)	154, 336
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	5 cut(s)	66, 87, 204, 243, 244
SduI	GDGCHC	2 cut(s)	117, 148
SetI	ASST	5 cut(s)	46, 120, 174, 393, 402
SfaNI	GCATC	1 cut(s)	332
SinI	GGWCC	2 cut(s)	154, 336
SmaI	CCCGGG	1 cut(s)	244
Sse9I	AATT	3 cut(s)	217, 223, 346
StyD4I	CCNGG	5 cut(s)	64, 85, 202, 241, 242
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	128, 161
TaiI	ACGT	3 cut(s)	120, 174, 402
TasI	AATT	3 cut(s)	217, 223, 346
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TscAI	CASTG	3 cut(s)	139, 153, 164
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	2 cut(s)	282, 416
TspMI	CCCGGG	1 cut(s)	242
TspRI	CASTG	3 cut(s)	139, 153, 164
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	154, 336
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	242
ZraI	GACGTC	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.