Rw6G025570

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000965
Physical Location & Seq
Reverse (-)
48949051 .. 48949492
442 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025570.1

Sequence Viewer

Length: 375 bp
ATGAAGCACTCTATTGTTTTGTTAATCTCTTTGGCAATACTCTCAGCCTTGACTGGTCGTGGAAATGCTGCCGAGAATAATATCCACGTGTCGGGTGTCGACAGGTGGTACGTGCACGTCGTCAATGGACTCGGGGGAGGTAGATGGCTCTTCGTTCATTGCCAGTCCAAAGATGACGATCTCGGAACTCATGATCTAGCAACAGGGAAGGAGTTTTGGTGGACGTTTTGGCATGAGAAGCACCATTTTTGGCTTTTGGATCATTGTGGCGATGAAGAAAGGAATTGCATCTGGACTGCAAAAGATGATGGGATTTACTTGAAAATCAATTCTAAAAATGTTGATGACTTTGTTCATAAATGGGAACCAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0007154 GO:0008150 GO:0009856 GO:0009875 GO:0009987 GO:0022414 GO:0032501 GO:0044706 GO:0051704
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

124

Amino Acids

14.28

Weight (kDa)

6.01

Isoelectric Point (pI)

26.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 38 - 78 4.4e-10 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AclWI GGATC 1 cut(s) 267
AcvI CACGTG 1 cut(s) 88
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 322
AjiI CACGTC 1 cut(s) 118
AjnI CCWGG 1 cut(s) 367
Alw21I GWGCWC 1 cut(s) 117
Alw44I GTGCAC 1 cut(s) 113
AlwI GGATC 1 cut(s) 267
Ama87I CYCGRG 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 55
BccI CCATC 2 cut(s) 138, 302
BciT130I CCWGG 1 cut(s) 369
BfaI CTAG 1 cut(s) 197
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 1 cut(s) 297
BsaAI YACGTR 2 cut(s) 88, 112
BsaBI GATNNNNATC 1 cut(s) 177
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 58, 163
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 1 cut(s) 369
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 2 cut(s) 58, 163
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 1 cut(s) 55
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 91
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 178, 193, 259
BspCNI CTCAG 1 cut(s) 56
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 366
BspPI GGATC 1 cut(s) 267
BspQI GCTCTTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 2 cut(s) 58, 163
BssMI GATC 3 cut(s) 178, 193, 259
Bst2UI CCWGG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 155
BstBAI YACGTR 2 cut(s) 88, 112
BstDEI CTNAG 1 cut(s) 43
BstKTI GATC 3 cut(s) 181, 196, 262
BstMBI GATC 3 cut(s) 178, 193, 259
BstMWI GCNNNNNNNGC 1 cut(s) 238
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 55
BtgZI GCGATG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 118
CciI TCATGA 1 cut(s) 190
CsiI ACCWGGT 1 cut(s) 367
Csp6I GTAC 1 cut(s) 109
CviAII CATG 2 cut(s) 191, 233
CviJI RGCY 3 cut(s) 47, 148, 253
CviKI_1 RGCY 3 cut(s) 47, 148, 253
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 43
DpnI GATC 3 cut(s) 180, 195, 261
DpnII GATC 3 cut(s) 178, 193, 259
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 367
FaeI CATG 2 cut(s) 194, 236
FaiI YATR 3 cut(s) 192, 234, 357
FatI CATG 2 cut(s) 190, 232
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 69
FspBI CTAG 1 cut(s) 197
GluI GCNGC 1 cut(s) 69
Hin1II CATG 2 cut(s) 194, 236
HincII GTYRAC 1 cut(s) 100
HindII GTYRAC 1 cut(s) 100
HinfI GANTC 1 cut(s) 129
Hpy166II GTNNAC 3 cut(s) 100, 115, 222
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 2 cut(s) 191, 292
Hpy8I GTNNAC 3 cut(s) 100, 115, 222
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 202
HpyCH4IV ACGT 4 cut(s) 87, 111, 117, 224
HpyCH4V TGCA 3 cut(s) 115, 288, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 238
HpyF3I CTNAG 1 cut(s) 43
HpySE526I ACGT 4 cut(s) 87, 111, 117, 224
Hsp92II CATG 2 cut(s) 194, 236
Kzo9I GATC 3 cut(s) 178, 193, 259
LguI GCTCTTC 1 cut(s) 155
LpnPI CCDG 6 cut(s) 39, 88, 176, 189, 277, 354
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 297
MabI ACCWGGT 1 cut(s) 367
MaeI CTAG 1 cut(s) 197
MaeII ACGT 4 cut(s) 87, 111, 117, 224
MalI GATC 3 cut(s) 180, 195, 261
MboI GATC 3 cut(s) 178, 193, 259
MboII GAAGA 2 cut(s) 142, 287
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 2 cut(s) 283, 328
MlyI GAGTC 1 cut(s) 123
MnlI CCTC 1 cut(s) 131
MseI TTAA 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 238
NdeII GATC 3 cut(s) 178, 193, 259
NlaIII CATG 2 cut(s) 194, 236
NlaIV GGNNCC 1 cut(s) 366
NmeAIII GCCGAG 1 cut(s) 97
PagI TCATGA 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PkrI GCNGC 1 cut(s) 70
PleI GAGTC 1 cut(s) 123
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 2 cut(s) 88, 112
Psp6I CCWGG 1 cut(s) 367
PspCI CACGTG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 1 cut(s) 366
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 3 cut(s) 178, 193, 259
SchI GAGTC 1 cut(s) 123
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 117
SetI ASST 7 cut(s) 90, 107, 114, 120, 142, 227, 373
SexAI ACCWGGT 1 cut(s) 367
SfaNI GCATC 1 cut(s) 297
Sse9I AATT 2 cut(s) 283, 328
SspMI CTAG 1 cut(s) 197
StyD4I CCNGG 1 cut(s) 367
TaiI ACGT 4 cut(s) 90, 114, 120, 227
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 283, 328
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 4 cut(s) 17, 146, 288, 344
VneI GTGCAC 1 cut(s) 113
XmiI GTMKAC 1 cut(s) 99
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.