Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

47524029 .. 47524529

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG281100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAATTGATATTTCATATCTTATCAAGTCCGCTAGCTAGCTCCCCAGAAACAAGAATGAGAGCTCTCAAAGGCATTGTCGTTTTCTATTTGTGTGCAGCTTTAGCCCTGAGTATCTGCCCGGGATCCTCTGCCAAATGGCCCGGTCTTGATCCCACCAACTGGCATGTGCACGTCGTTAACGGTTTCGGTGGACAAAGGGCATTGGTTGTCCATTGTTGGTCTGACCTCGACGATCTTGGCACCCATACTCTTTATCCTGGTGGCGACTTCAACTGGCATTTCCATGTCAACTTGCCCGGGACAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTTGTTTGATGTGTTTTGGAAGGAGAGTGAACATATGTGGCTTCGGACCCATTGCAATTGGAAAGCGTGTTTTTGGATTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCGGAGAATCGTGACGAGCGTATTCATCCATGGGAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

166

Amino Acids

19.13

Weight (kDa)

6.28

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	56 - 164	6.6e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccB7I	CCANNNNNTGG	1 cut(s)	162
AccII	CGCG	1 cut(s)	310
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	1 cut(s)	32
AclI	AACGTT	1 cut(s)	456
AclWI	GGATC	3 cut(s)	120, 133, 146
AfiI	CCNNNNNNNGG	1 cut(s)	162
AflIII	ACRYGT	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	274
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	4 cut(s)	38, 42, 65, 101
AluI	AGCT	4 cut(s)	38, 42, 65, 101
Alw21I	GWGCWC	2 cut(s)	67, 174
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	120, 133, 146
Ama87I	CYCGRG	2 cut(s)	121, 299
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	2 cut(s)	141, 393
AsuC2I	CCSGG	5 cut(s)	122, 123, 144, 300, 301
AsuNHI	GCTAGC	2 cut(s)	34, 38
AvaI	CYCGRG	2 cut(s)	121, 299
AvaII	GGWCC	1 cut(s)	393
BaeGI	GKGCMC	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	2 cut(s)	67, 174
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	5 cut(s)	122, 123, 144, 300, 301
BfaI	CTAG	2 cut(s)	35, 39
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	6 cut(s)	122, 123, 144, 261, 300, 301
Bme18I	GGWCC	1 cut(s)	393
BmeT110I	CYCGRG	2 cut(s)	121, 299
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	141, 393
BmiI	GGNNCC	3 cut(s)	127, 244, 395
BmrFI	CCNGG	6 cut(s)	122, 123, 144, 261, 300, 301
BmtI	GCTAGC	2 cut(s)	38, 42
BpuMI	CCSGG	5 cut(s)	122, 123, 144, 300, 301
BsaJI	CCNNGG	3 cut(s)	121, 299, 488
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	162
Bse1I	ACTGG	2 cut(s)	167, 281
Bse3DI	GCAATG	1 cut(s)	397
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	3 cut(s)	121, 299, 488
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	2 cut(s)	167, 281
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	110
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	67, 174
BsiHKCI	CYCGRG	2 cut(s)	121, 299
BsiSI	CCGG	4 cut(s)	122, 144, 300, 461
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	142
BsoBI	CYCGRG	2 cut(s)	121, 299
Bsp1286I	GDGCHC	2 cut(s)	67, 174
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	125, 151, 235
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	32
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	127, 244, 395
BspOI	GCTAGC	2 cut(s)	38, 42
BspPI	GGATC	3 cut(s)	120, 133, 146
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	167, 281
BssECI	CCNNGG	3 cut(s)	121, 299, 488
BssMI	GATC	3 cut(s)	125, 151, 235
BssT1I	CCWWGG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	36, 40
BstDEI	CTNAG	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	128, 154, 238
BstMBI	GATC	3 cut(s)	125, 151, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	170
BstSCI	CCNGG	6 cut(s)	120, 121, 142, 259, 298, 299
BstSLI	GKGCMC	1 cut(s)	174
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	125
BstYI	RGATCY	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	488
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	36, 40
Cfr13I	GGNCC	2 cut(s)	141, 393
Cfr9I	CCCGGG	2 cut(s)	121, 299
CviAII	CATG	4 cut(s)	167, 287, 329, 489
CviJI	RGCY	7 cut(s)	38, 42, 65, 101, 107, 142, 388
CviKI_1	RGCY	7 cut(s)	38, 42, 65, 101, 107, 142, 388
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	3 cut(s)	127, 153, 237
DpnII	GATC	3 cut(s)	125, 151, 235
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	121, 299
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	4 cut(s)	170, 290, 332, 492
FaiI	YATR	8 cut(s)	18, 168, 249, 288, 330, 381, 383, 490
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	4 cut(s)	166, 286, 328, 488
FauNDI	CATATG	1 cut(s)	381
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	471
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	35, 39
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	122, 144, 300, 461
Hin1II	CATG	4 cut(s)	170, 290, 332, 492
HincII	GTYRAC	2 cut(s)	181, 292
HindII	GTYRAC	2 cut(s)	181, 292
HinfI	GANTC	1 cut(s)	466
HpaI	GTTAAC	1 cut(s)	181
HpaII	CCGG	4 cut(s)	122, 144, 300, 461
Hpy166II	GTNNAC	5 cut(s)	172, 181, 194, 292, 377
Hpy188I	TCNGA	2 cut(s)	226, 393
Hpy188III	TCNNGA	3 cut(s)	149, 461, 470
Hpy8I	GTNNAC	5 cut(s)	172, 181, 194, 292, 377
Hpy99I	CGWCG	2 cut(s)	179, 236
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	174, 456
HpyCH4V	TGCA	4 cut(s)	98, 172, 332, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	2 cut(s)	174, 456
Hsp92II	CATG	4 cut(s)	170, 290, 332, 492
Kpn2I	TCCGGA	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	3 cut(s)	125, 151, 235
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	110
MaeI	CTAG	2 cut(s)	35, 39
MaeII	ACGT	2 cut(s)	174, 456
MaeIII	GTNAC	1 cut(s)	470
MalI	GATC	3 cut(s)	127, 153, 237
MboI	GATC	3 cut(s)	125, 151, 235
MfeI	CAATTG	1 cut(s)	403
MflI	RGATCY	1 cut(s)	125
MhlI	GDGCHC	2 cut(s)	67, 174
MluCI	AATT	2 cut(s)	5, 403
MluI	ACGCGT	1 cut(s)	308
MnlI	CCTC	3 cut(s)	139, 239, 458
MroI	TCCGGA	1 cut(s)	460
MseI	TTAA	1 cut(s)	180
MslI	CAYNNNNRTG	1 cut(s)	285
MspI	CCGG	4 cut(s)	122, 144, 300, 461
MspR9I	CCNGG	6 cut(s)	122, 123, 144, 261, 300, 301
MunI	CAATTG	1 cut(s)	403
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	5 cut(s)	122, 123, 144, 300, 301
NcoI	CCATGG	1 cut(s)	488
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	3 cut(s)	125, 151, 235
NheI	GCTAGC	2 cut(s)	34, 38
NlaIII	CATG	4 cut(s)	170, 290, 332, 492
NlaIV	GGNNCC	3 cut(s)	127, 244, 395
NmuCI	GTSAC	1 cut(s)	470
NspI	RCATGY	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	162
PkrI	GCNGC	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	67
Psp1406I	AACGTT	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	3 cut(s)	127, 244, 395
PspPI	GGNCC	2 cut(s)	141, 393
PsuI	RGATCY	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	285
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	125, 151, 235
Sau96I	GGNCC	2 cut(s)	141, 393
ScrFI	CCNGG	6 cut(s)	122, 123, 144, 261, 300, 301
SduI	GDGCHC	2 cut(s)	67, 174
SetI	ASST	8 cut(s)	40, 44, 67, 103, 177, 231, 450, 459
SinI	GGWCC	1 cut(s)	393
SmaI	CCCGGG	2 cut(s)	123, 301
SmiMI	CAYNNNNRTG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	5, 403
SsiI	CCGC	1 cut(s)	32
SspMI	CTAG	2 cut(s)	35, 39
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	6 cut(s)	120, 121, 142, 259, 298, 299
StyI	CCWWGG	1 cut(s)	488
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	2 cut(s)	177, 459
TaqI	TCGA	1 cut(s)	231
TasI	AATT	2 cut(s)	5, 403
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	2 cut(s)	5, 473
TspMI	CCCGGG	2 cut(s)	121, 299
Van91I	CCANNNNNTGG	1 cut(s)	162
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	393
XceI	RCATGY	1 cut(s)	170
XmaI	CCCGGG	2 cut(s)	121, 299
XspI	CTAG	2 cut(s)	35, 39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.