RLG00000012531

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000965
Physical Location & Seq
Forward (+)
19641063 .. 19642065
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012531

Sequence Viewer

Length: 480 bp
ATGAGCATTAGTATGAAGCACTCTATTGTTTTGTTAATCTCTTTGGCAATACTCTCAGCCTTGACTGGTCGTGGAAATGCTGCTGAGAACAATATCCACTTGCCGGGTGTCGACAGGTGGTACGTCCACGTCGTCAATGGACTCGGGGGAGGCAGATGGCTCTTCGTTCATTGCCAGTCCAAAGACGACGATCTCGGAACTCATGATCTAGCAACAGGGAAGGAGTTTTGGTGGACGTTCAAGACAGACTATTTCGGGCGCACACTTTTCTGGTGCTACCTGCGGACCGATGAAGCCACCAACAAACAACATGCTACTTTTGATGCGTTTTGGCATGAGAAGTACCATTTTTGGCTTTTGGATCATTGTGGCGATGAAGAAAGGAATTGCATCTGGACTGCAAAAGATGATGGGATTTACTTGAAAATCAATTCTAAAAATGTTGATGACTTTGTTCATAAATGGGAACCAGGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

160

Amino Acids

18.56

Weight (kDa)

6.02

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 42 - 155 2e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 283
AclWI GGATC 1 cut(s) 369
AfaI GTAC 2 cut(s) 122, 344
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 2 cut(s) 241, 424
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 1 cut(s) 469
AlwI GGATC 1 cut(s) 369
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 80
AspLEI GCGC 1 cut(s) 261
AspS9I GGNCC 1 cut(s) 285
AsuC2I CCSGG 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 67
BccI CCATC 2 cut(s) 150, 404
BciT130I CCWGG 1 cut(s) 471
BcnI CCSGG 1 cut(s) 105
BfaI CTAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 288
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 105, 471
Bme18I GGWCC 1 cut(s) 285
BmeT110I CYCGRG 1 cut(s) 143
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 2 cut(s) 105, 471
BmsI GCATC 2 cut(s) 313, 399
BpuMI CCSGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 70, 175
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 2 cut(s) 69, 75
BseNI ACTGG 2 cut(s) 70, 175
BseXI GCAGC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 143
Bsp143I GATC 3 cut(s) 190, 205, 361
BspACI CCGC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 68, 76
BspHI TCATGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 468
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 369
BspQI GCTCTTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 2 cut(s) 70, 175
BssMI GATC 3 cut(s) 190, 205, 361
Bst2UI CCWGG 1 cut(s) 471
Bst6I CTCTTC 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 55, 84
BstHHI GCGC 1 cut(s) 261
BstKTI GATC 3 cut(s) 193, 208, 364
BstMBI GATC 3 cut(s) 190, 205, 361
BstNI CCWGG 1 cut(s) 471
BstNSI RCATGY 1 cut(s) 314
BstSCI CCNGG 2 cut(s) 103, 469
BstV1I GCAGC 1 cut(s) 67
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 130
BveI ACCTGC 1 cut(s) 288
CciI TCATGA 1 cut(s) 202
CfoI GCGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 285
CpoI CGGWCCG 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 2 cut(s) 121, 343
CspI CGGWCCG 1 cut(s) 285
CviAII CATG 3 cut(s) 203, 311, 335
CviJI RGCY 4 cut(s) 59, 160, 296, 355
CviKI_1 RGCY 4 cut(s) 59, 160, 296, 355
CviQI GTAC 2 cut(s) 121, 343
DdeI CTNAG 2 cut(s) 55, 84
DpnI GATC 3 cut(s) 192, 207, 363
DpnII GATC 3 cut(s) 190, 205, 361
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 469
FaeI CATG 3 cut(s) 206, 314, 338
FaiI YATR 5 cut(s) 14, 204, 312, 336, 459
FatI CATG 3 cut(s) 202, 310, 334
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 260
GluI GCNGC 1 cut(s) 81
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 261
Hin1II CATG 3 cut(s) 206, 314, 338
Hin6I GCGC 1 cut(s) 259
HinP1I GCGC 1 cut(s) 259
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 104
Hpy166II GTNNAC 3 cut(s) 112, 127, 234
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 3 cut(s) 203, 241, 394
Hpy8I GTNNAC 3 cut(s) 112, 127, 234
Hpy99I CGWCG 2 cut(s) 134, 191
HpyAV CCTTC 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 123, 129, 236
HpyCH4V TGCA 2 cut(s) 390, 401
HpyF3I CTNAG 2 cut(s) 55, 84
HpySE526I ACGT 3 cut(s) 123, 129, 236
Hsp92II CATG 3 cut(s) 206, 314, 338
HspAI GCGC 1 cut(s) 259
Kzo9I GATC 3 cut(s) 190, 205, 361
LguI GCTCTTC 1 cut(s) 167
LpnPI CCDG 9 cut(s) 51, 100, 117, 188, 201, 256, 293, 379, 456
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 2 cut(s) 313, 399
MabI ACCWGGT 1 cut(s) 469
MaeI CTAG 1 cut(s) 209
MaeII ACGT 3 cut(s) 123, 129, 236
MalI GATC 3 cut(s) 192, 207, 363
MboI GATC 3 cut(s) 190, 205, 361
MboII GAAGA 2 cut(s) 154, 389
MluCI AATT 2 cut(s) 385, 430
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 1 cut(s) 143
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 11
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 2 cut(s) 105, 471
MvaI CCWGG 1 cut(s) 471
NciI CCSGG 1 cut(s) 105
NdeII GATC 3 cut(s) 190, 205, 361
NlaIII CATG 3 cut(s) 206, 314, 338
NlaIV GGNNCC 1 cut(s) 468
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 468
PspPI GGNCC 1 cut(s) 285
RsaI GTAC 2 cut(s) 122, 344
RsaNI GTAC 2 cut(s) 121, 343
RseI CAYNNNNRTG 1 cut(s) 11
Rsr2I CGGWCCG 1 cut(s) 285
RsrII CGGWCCG 1 cut(s) 285
SalI GTCGAC 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 3 cut(s) 190, 205, 361
Sau96I GGNCC 1 cut(s) 285
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 2 cut(s) 105, 471
SetI ASST 6 cut(s) 119, 126, 132, 239, 282, 475
SexAI ACCWGGT 1 cut(s) 469
SfaNI GCATC 2 cut(s) 313, 399
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 11
Sse9I AATT 2 cut(s) 385, 430
SsiI CCGC 1 cut(s) 283
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 103, 469
TaiI ACGT 3 cut(s) 126, 132, 239
TaqI TCGA 1 cut(s) 111
TaqII GACCGA 1 cut(s) 302
TasI AATT 2 cut(s) 385, 430
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TseI GCWGC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 29, 158, 306, 390, 446
VpaK11BI GGWCC 1 cut(s) 285
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.