Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

53015639 .. 53015953

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG300900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAGAACTCTATTGTTTTGTTCATCTCTCTGGCAATATTCACAGCCTTGAGTGGTCGTGGAAATGCTGCCGAGAGCAAATACCACCTGGCGGGTGTCGACAGGTGGTACGTGCACGTCGTCAATGGATTTGGGGAAGGTAGATTGCTCTTCGTTCGTTGCAAGTCCAAAGACAACGATCTCGGACCTCATGATCTAGCGCCAGGGAAGGAGTTTTCGTGGACGTTCAAGACTAACTATTTCGGGCACACGCTTTTCTGGTGCTACCTGCGCACCGAGCGAGGAAGCCACCAACAAAAAACATGCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

104

Amino Acids

11.89

Weight (kDa)

9.21

Isoelectric Point (pI)

13.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	38 - 98	1.3e-18	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	272
Acc36I	ACCTGC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	229
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	87, 202
Alw21I	GWGCWC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	113
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	68, 306
AspLEI	GCGC	2 cut(s)	202, 273
AspS9I	GGNCC	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	2 cut(s)	117, 249
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	55, 293
BciT130I	CCWGG	2 cut(s)	89, 204
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	69, 307
BlsI	GCNGC	2 cut(s)	70, 308
Bme1390I	CCNGG	2 cut(s)	89, 204
Bme18I	GGWCC	1 cut(s)	185
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	185
BmrFI	CCNGG	2 cut(s)	89, 204
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	89, 204
BseDI	CCNNGG	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseSI	GKGCMC	2 cut(s)	117, 249
BseXI	GCAGC	2 cut(s)	55, 293
BsiHKAI	GWGCWC	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	117, 249
Bsp143I	GATC	2 cut(s)	178, 193
BspACI	CCGC	1 cut(s)	92
BspHI	TCATGA	1 cut(s)	190
BspMI	ACCTGC	1 cut(s)	276
BspQI	GCTCTTC	1 cut(s)	155
BssECI	CCNNGG	1 cut(s)	203
BssMI	GATC	2 cut(s)	178, 193
Bst2UI	CCWGG	2 cut(s)	89, 204
Bst6I	CTCTTC	1 cut(s)	155
BstBAI	YACGTR	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 273
BstKTI	GATC	2 cut(s)	181, 196
BstMBI	GATC	2 cut(s)	178, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 277
BstNI	CCWGG	2 cut(s)	89, 204
BstNSI	RCATGY	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	87, 202
BstSLI	GKGCMC	2 cut(s)	117, 249
BstV1I	GCAGC	2 cut(s)	55, 293
BtrI	CACGTC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	190
CfoI	GCGC	2 cut(s)	202, 273
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	2 cut(s)	191, 303
CviJI	RGCY	2 cut(s)	47, 288
CviKI_1	RGCY	2 cut(s)	47, 288
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	2 cut(s)	180, 195
DpnII	GATC	2 cut(s)	178, 193
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	87, 202
FaeI	CATG	2 cut(s)	194, 306
FaiI	YATR	2 cut(s)	192, 304
FatI	CATG	2 cut(s)	190, 302
FauI	CCCGC	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	69, 307
Fsp4HI	GCNGC	2 cut(s)	69, 307
FspBI	CTAG	1 cut(s)	197
FspI	TGCGCA	1 cut(s)	272
GlaI	GCGC	2 cut(s)	201, 272
GluI	GCNGC	2 cut(s)	69, 307
HaeII	RGCGCY	1 cut(s)	203
HhaI	GCGC	2 cut(s)	202, 273
Hin1II	CATG	2 cut(s)	194, 306
Hin6I	GCGC	2 cut(s)	200, 271
HinP1I	GCGC	2 cut(s)	200, 271
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	100, 115, 222
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	2 cut(s)	191, 229
Hpy8I	GTNNAC	3 cut(s)	100, 115, 222
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	2 cut(s)	131, 202
HpyCH4IV	ACGT	3 cut(s)	111, 117, 224
HpyCH4V	TGCA	2 cut(s)	115, 162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 277
HpySE526I	ACGT	3 cut(s)	111, 117, 224
Hsp92II	CATG	2 cut(s)	194, 306
HspAI	GCGC	2 cut(s)	200, 271
Kzo9I	GATC	2 cut(s)	178, 193
LguI	GCTCTTC	1 cut(s)	155
LpnPI	CCDG	8 cut(s)	17, 74, 88, 101, 189, 216, 244, 281
Lsp1109I	GCAGC	2 cut(s)	55, 293
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	3 cut(s)	111, 117, 224
MalI	GATC	2 cut(s)	180, 195
MboI	GATC	2 cut(s)	178, 193
MboII	GAAGA	2 cut(s)	16, 142
MhlI	GDGCHC	2 cut(s)	117, 249
MnlI	CCTC	2 cut(s)	198, 275
MspR9I	CCNGG	2 cut(s)	89, 204
MvaI	CCWGG	2 cut(s)	89, 204
MwoI	GCNNNNNNNGC	2 cut(s)	270, 277
NdeII	GATC	2 cut(s)	178, 193
NlaIII	CATG	2 cut(s)	194, 306
NmeAIII	GCCGAG	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	272
NspI	RCATGY	1 cut(s)	306
PagI	TCATGA	1 cut(s)	190
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	70, 308
Ppu21I	YACGTR	1 cut(s)	112
Psp6I	CCWGG	2 cut(s)	87, 202
PspGI	CCWGG	2 cut(s)	87, 202
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SalI	GTCGAC	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	155
SatI	GCNGC	2 cut(s)	69, 307
Sau3AI	GATC	2 cut(s)	178, 193
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	2 cut(s)	89, 204
SduI	GDGCHC	2 cut(s)	117, 249
SetI	ASST	8 cut(s)	90, 107, 114, 120, 142, 190, 227, 270
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SsiI	CCGC	1 cut(s)	92
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	87, 202
TaiI	ACGT	3 cut(s)	114, 120, 227
TaqI	TCGA	1 cut(s)	99
TseI	GCWGC	2 cut(s)	68, 306
TspDTI	ATGAA	2 cut(s)	13, 17
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	185
XceI	RCATGY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.