Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

20789729 .. 20790172

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGCTCTCAAAAGCATTGTCATTTTCTATTTGTGTGCCGCTTTAGCCCTGAGTATTTGCCCGGAATCCTCTGCCAAATGGCCTGGTCTTGATCCCACCAACTGGCATGTGCACGTCGTTAATGGTTTCGGTGGACAAAGAGCATTGGTTGTCCATTGTTGGTCCGACCTCGATGATCTTGGCATCCATACTCTTTATCCTGGTGGTGACTTCAATTGGCACTTCCATGTCAACTTGCCCGGAACAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTTGTTTGATGTGTTTTGGAGGGAAAGTAAACATATGTGGCTTCGGACCAGATGTGACTGGAAAGCATGCTTTTGGATTGCGAAAGACGATGGGATTTACCTCAAGAACATTCCAGCGAGTCGTGATGAGCTTATTCATCCATGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

148

Amino Acids

16.97

Weight (kDa)

6.33

Isoelectric Point (pI)

34.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	37 - 145	3.5e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	105
AccII	CGCG	1 cut(s)	253
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	105
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	2 cut(s)	85, 202
AluBI	AGCT	2 cut(s)	8, 421
AluI	AGCT	2 cut(s)	8, 421
Alw21I	GWGCWC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	83
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	165, 336
AsuC2I	CCSGG	2 cut(s)	65, 243
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	165, 336
BaeGI	GKGCMC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	374
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	2 cut(s)	87, 204
BcnI	CCSGG	2 cut(s)	65, 243
BisI	GCNGC	2 cut(s)	6, 42
BlsI	GCNGC	2 cut(s)	7, 43
Bme1390I	CCNGG	4 cut(s)	65, 87, 204, 243
Bme18I	GGWCC	2 cut(s)	165, 336
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	165, 336
BmrFI	CCNGG	4 cut(s)	65, 87, 204, 243
BmsI	GCATC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	65, 243
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	2 cut(s)	110, 353
BseBI	CCWGG	2 cut(s)	87, 204
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	186, 427
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	110, 353
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	65, 243
BslI	CCNNNNNNNGG	1 cut(s)	105
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	94, 178
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	253
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	110, 353
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	94, 178
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	87, 204
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	186, 427
BstFNI	CGCG	1 cut(s)	253
BstKTI	GATC	2 cut(s)	97, 181
BstMBI	GATC	2 cut(s)	94, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNI	CCWGG	2 cut(s)	87, 204
BstNSI	RCATGY	2 cut(s)	113, 360
BstSCI	CCNGG	4 cut(s)	63, 85, 202, 241
BstSLI	GKGCMC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	186, 427
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	2 cut(s)	165, 336
CviAII	CATG	6 cut(s)	110, 230, 272, 357, 432, 441
CviJI	RGCY	5 cut(s)	8, 50, 85, 331, 421
CviKI_1	RGCY	5 cut(s)	8, 50, 85, 331, 421
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	96, 180
DpnII	GATC	2 cut(s)	94, 178
Eco130I	CCWWGG	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	165, 336
EcoRII	CCWGG	2 cut(s)	85, 202
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	6 cut(s)	113, 233, 275, 360, 435, 444
FaiI	YATR	9 cut(s)	111, 192, 231, 273, 324, 326, 358, 433, 442
FatI	CATG	6 cut(s)	109, 229, 271, 356, 431, 440
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	6, 42
FokI	GGATG	2 cut(s)	173, 414
Fsp4HI	GCNGC	2 cut(s)	6, 42
GluI	GCNGC	2 cut(s)	6, 42
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	2 cut(s)	65, 243
Hin1II	CATG	6 cut(s)	113, 233, 275, 360, 435, 444
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	2 cut(s)	68, 409
HpaII	CCGG	2 cut(s)	65, 243
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	4 cut(s)	115, 137, 235, 320
Hpy188I	TCNGA	2 cut(s)	169, 336
Hpy188III	TCNNGA	3 cut(s)	92, 394, 413
Hpy8I	GTNNAC	4 cut(s)	115, 137, 235, 320
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	115, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	6 cut(s)	113, 233, 275, 360, 435, 444
Kzo9I	GATC	2 cut(s)	94, 178
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	209, 344
MalI	GATC	2 cut(s)	96, 180
MboI	GATC	2 cut(s)	94, 178
MfeI	CAATTG	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	217
MluI	ACGCGT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	82, 182, 303, 401
MseI	TTAA	1 cut(s)	123
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	2 cut(s)	65, 243
MspR9I	CCNGG	4 cut(s)	65, 87, 204, 243
MunI	CAATTG	1 cut(s)	217
MvaI	CCWGG	2 cut(s)	87, 204
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	2 cut(s)	65, 243
NcoI	CCATGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	94, 178
NlaIII	CATG	6 cut(s)	113, 233, 275, 360, 435, 444
NmuCI	GTSAC	2 cut(s)	209, 344
NspI	RCATGY	2 cut(s)	113, 360
PaeI	GCATGC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	7, 43
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	85, 202
PspGI	CCWGG	2 cut(s)	85, 202
PspPI	GGNCC	2 cut(s)	165, 336
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	123
SatI	GCNGC	2 cut(s)	6, 42
Sau3AI	GATC	2 cut(s)	94, 178
Sau96I	GGNCC	2 cut(s)	165, 336
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	4 cut(s)	65, 87, 204, 243
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	10, 120, 174, 393, 423
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	165, 336
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	4 cut(s)	63, 85, 202, 241
StyI	CCWWGG	1 cut(s)	431
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	217
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	1 cut(s)	123
Tru9I	TTAA	1 cut(s)	123
TseFI	GTSAC	2 cut(s)	209, 344
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	209, 344
TspDTI	ATGAA	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	165, 336
XceI	RCATGY	2 cut(s)	113, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.