Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

47524756 .. 47538423

Gene Structure 13668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATTTGAAAACACTCGAACTGCTATATTGCTTTCTCTCCTACTACTTGAGAGAAACTTTAGCCCTAAGTATCTACCCAGGATCCTCTGCCAAAGCTCCTGGTCTTGATCCCACCGACTGGCATGTGCACGTCGTTAACGGTTTCAGTGGGCGAAGAGCACTGGTGGTCCACTGTAAGTCCGACGTCAACGATCTCGGCACCCATACTCTTTATCCTGGTGGCGACTTCAATTGGAATTTCCATGTCAACTTGCCCGGGTCAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTCATTTGATGTGTTTTGGAAGGAGAGTCAACATATGTGGCTCCGGACCAGATGCAATTGGAAAGCGTGCTTTTGGACTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCAGAGAATCATGACGAGCGTATTCATCCATGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

152

Amino Acids

17.7

Weight (kDa)

6.34

Isoelectric Point (pI)

29.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	42 - 150	6.7e-27	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccB1I	GGYRCC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	348
AclI	AACGTT	1 cut(s)	414
AclWI	GGATC	3 cut(s)	78, 91, 104
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	10, 232
AjiI	CACGTC	1 cut(s)	133
AjnI	CCWGG	3 cut(s)	79, 100, 217
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	2 cut(s)	132, 163
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	78, 91, 104
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	169, 351
AsuC2I	CCSGG	2 cut(s)	258, 259
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	169, 351
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	132, 163
BccI	CCATC	1 cut(s)	389
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	81, 102, 219
BcnI	CCSGG	2 cut(s)	258, 259
Bme1390I	CCNGG	5 cut(s)	81, 102, 219, 258, 259
Bme18I	GGWCC	2 cut(s)	169, 351
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	169, 351
BmiI	GGNNCC	3 cut(s)	85, 202, 347
BmrFI	CCNGG	5 cut(s)	81, 102, 219, 258, 259
BmsI	GCATC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	70
BpuMI	CCSGG	2 cut(s)	258, 259
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	79, 257, 446
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	125, 168
BseAI	TCCGGA	1 cut(s)	348
BseBI	CCWGG	3 cut(s)	81, 102, 219
BseDI	CCNNGG	3 cut(s)	79, 257, 446
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	125, 168
BseSI	GKGCMC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	268
BshNI	GGYRCC	1 cut(s)	200
BsiHKAI	GWGCWC	2 cut(s)	132, 163
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	2 cut(s)	258, 349
BslI	CCNNNNNNNGG	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	132, 163
Bsp13I	TCCGGA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	83, 109, 193
Bsp19I	CCATGG	1 cut(s)	446
BspEI	TCCGGA	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	427
BspLI	GGNNCC	3 cut(s)	85, 202, 347
BspPI	GGATC	3 cut(s)	78, 91, 104
BspQI	GCTCTTC	1 cut(s)	151
BspT107I	GGYRCC	1 cut(s)	200
BsrI	ACTGG	2 cut(s)	125, 168
BssECI	CCNNGG	3 cut(s)	79, 257, 446
BssMI	GATC	3 cut(s)	83, 109, 193
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	3 cut(s)	81, 102, 219
Bst4CI	ACNGT	2 cut(s)	143, 176
Bst6I	CTCTTC	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	446
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	268
BstKTI	GATC	3 cut(s)	86, 112, 196
BstMBI	GATC	3 cut(s)	83, 109, 193
BstNI	CCWGG	3 cut(s)	81, 102, 219
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	5 cut(s)	79, 100, 217, 256, 257
BstSLI	GKGCMC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	83
BtgI	CCRYGG	1 cut(s)	446
BtrI	CACGTC	1 cut(s)	133
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	154, 161, 172
Cac8I	GCNNGC	1 cut(s)	373
CciI	TCATGA	1 cut(s)	427
Cfr13I	GGNCC	2 cut(s)	169, 351
Cfr9I	CCCGGG	1 cut(s)	257
CspCI	CAANNNNNGTGG	2 cut(s)	323, 358
CviAII	CATG	6 cut(s)	125, 245, 287, 428, 447, 456
CviJI	RGCY	3 cut(s)	65, 98, 346
CviKI_1	RGCY	3 cut(s)	65, 98, 346
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	85, 111, 195
DpnII	GATC	3 cut(s)	83, 109, 193
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	1 cut(s)	446
Eco47I	GGWCC	2 cut(s)	169, 351
Eco88I	CYCGRG	1 cut(s)	257
EcoRII	CCWGG	3 cut(s)	79, 100, 217
EcoT14I	CCWWGG	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	6 cut(s)	128, 248, 290, 431, 450, 459
FatI	CATG	6 cut(s)	124, 244, 286, 427, 446, 455
FauNDI	CATATG	1 cut(s)	339
FokI	GGATG	1 cut(s)	429
HapII	CCGG	2 cut(s)	258, 349
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	128, 248, 290, 431, 450, 459
HincII	GTYRAC	5 cut(s)	139, 190, 250, 264, 335
HindII	GTYRAC	5 cut(s)	139, 190, 250, 264, 335
HinfI	GANTC	2 cut(s)	331, 424
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	258, 349
Hpy166II	GTNNAC	7 cut(s)	130, 139, 172, 190, 250, 264, 335
Hpy188I	TCNGA	1 cut(s)	184
Hpy188III	TCNNGA	4 cut(s)	107, 349, 419, 428
Hpy8I	GTNNAC	7 cut(s)	130, 139, 172, 190, 250, 264, 335
Hpy99I	CGWCG	2 cut(s)	137, 188
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	143, 176
HpyCH4IV	ACGT	3 cut(s)	132, 186, 414
HpyCH4V	TGCA	3 cut(s)	130, 290, 360
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	3 cut(s)	132, 186, 414
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	128, 248, 290, 431, 450, 459
Kpn2I	TCCGGA	1 cut(s)	348
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	83, 109, 193
LguI	GCTCTTC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	103, 351
LweI	GCATC	1 cut(s)	347
MaeII	ACGT	3 cut(s)	132, 186, 414
MalI	GATC	3 cut(s)	85, 111, 195
MboI	GATC	3 cut(s)	83, 109, 193
MboII	GAAGA	1 cut(s)	168
MfeI	CAATTG	2 cut(s)	232, 361
MflI	RGATCY	1 cut(s)	83
MhlI	GDGCHC	2 cut(s)	132, 163
MluCI	AATT	3 cut(s)	232, 238, 361
MluI	ACGCGT	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	97, 416
MroI	TCCGGA	1 cut(s)	348
MseI	TTAA	1 cut(s)	138
MspI	CCGG	2 cut(s)	258, 349
MspR9I	CCNGG	5 cut(s)	81, 102, 219, 258, 259
MunI	CAATTG	2 cut(s)	232, 361
MvaI	CCWGG	3 cut(s)	81, 102, 219
MvnI	CGCG	1 cut(s)	268
NciI	CCSGG	2 cut(s)	258, 259
NcoI	CCATGG	1 cut(s)	446
NdeI	CATATG	1 cut(s)	339
NdeII	GATC	3 cut(s)	83, 109, 193
NlaIII	CATG	6 cut(s)	128, 248, 290, 431, 450, 459
NlaIV	GGNNCC	3 cut(s)	85, 202, 347
NmeAIII	GCCGAG	1 cut(s)	177
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	427
PciSI	GCTCTTC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	120
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp1406I	AACGTT	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	79, 100, 217
PspGI	CCWGG	3 cut(s)	79, 100, 217
PspN4I	GGNNCC	3 cut(s)	85, 202, 347
PspPI	GGNCC	2 cut(s)	169, 351
PsuI	RGATCY	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	138
Sau3AI	GATC	3 cut(s)	83, 109, 193
Sau96I	GGNCC	2 cut(s)	169, 351
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	5 cut(s)	81, 102, 219, 258, 259
SduI	GDGCHC	2 cut(s)	132, 163
SetI	ASST	5 cut(s)	100, 135, 189, 408, 417
SfaNI	GCATC	1 cut(s)	347
SinI	GGWCC	2 cut(s)	169, 351
SmaI	CCCGGG	1 cut(s)	259
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	232, 238, 361
StyD4I	CCNGG	5 cut(s)	79, 100, 217, 256, 257
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	143, 176
TaiI	ACGT	3 cut(s)	135, 189, 417
TaqI	TCGA	1 cut(s)	18
TasI	AATT	3 cut(s)	232, 238, 361
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	3 cut(s)	154, 168, 179
TspDTI	ATGAA	2 cut(s)	297, 431
TspMI	CCCGGG	1 cut(s)	257
TspRI	CASTG	3 cut(s)	154, 168, 179
Van91I	CCANNNNNTGG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	169, 351
XapI	RAATTY	1 cut(s)	238
XceI	RCATGY	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	257
ZraI	GACGTC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.