Rh6AG285800

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000965
Physical Location & Seq
Forward (+)
48219956 .. 48234677
14722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG285800.1

Sequence Viewer

Length: 738 bp
ATGTGCACGTCGTTAACGGTTTTGGTGGACAAAGAGCATTGGTTGTCCATTGTTGGTCCGACCTCGACGATCTTGGCACCCATACTCTTTATCCTGGTGGCGACTTCAACTGGCATTTCCATGTCAACTTGCCCGGGACAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTTATTTGATGTGTTTTGGAAGGAGAGTGAACATATGTGGCTTCGGACCCATTGCAACTGGAAAGCGTGTTTTTGGATTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCGGAGAATCGTGACGAGCGTATTCATCCATGGGAACAATGATGCTTTAGCCCTAAGTATCTACCCAGGATCCTCTGCCAAAGCGCCTGGTCTTGATCCCACTGACTGGCATGTGCACGTCGTTAACGGTTTCAGTGGGCGAAGAGCACTGGTGGTCCACTGTAAGTCCGACGTCAACGATCTCGGCACCCATACTCTTTATCCTGGTGGCGACTTCAATTGGAATTTCCATGTCAACTTGCCCGGGTCAACGCGTTTCACTTGCGACTTCCATGCAGACAAACAACACGCTTCATTTGATGTGTTTTGGAAGGAGAGTCAACATATGTGGCTCCGGACCAGATGCAATTGGAAAGCGTGCTTTTGGACTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCAGAGAATCGTGACGAGCGTATTCATCCATGGGAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

245

Amino Acids

27.51

Weight (kDa)

9.08

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 135 - 243 2.2e-26 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 76, 479
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 2 cut(s) 144, 547
AccIII TCCGGA 2 cut(s) 294, 627
AclI AACGTT 2 cut(s) 290, 693
AclWI GGATC 3 cut(s) 357, 370, 383
AcsI RAATTY 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 2 cut(s) 142, 545
AgsI TTSAA 2 cut(s) 108, 511
AjiI CACGTC 2 cut(s) 9, 412
AjnI CCWGG 4 cut(s) 93, 358, 379, 496
Alw21I GWGCWC 3 cut(s) 8, 411, 442
Alw44I GTGCAC 2 cut(s) 4, 407
AlwI GGATC 3 cut(s) 357, 370, 383
Ama87I CYCGRG 2 cut(s) 133, 536
Aor13HI TCCGGA 2 cut(s) 294, 627
ApaLI GTGCAC 2 cut(s) 4, 407
ApoI RAATTY 1 cut(s) 517
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 4 cut(s) 56, 227, 448, 630
AsuC2I CCSGG 4 cut(s) 134, 135, 537, 538
AvaI CYCGRG 2 cut(s) 133, 536
AvaII GGWCC 4 cut(s) 56, 227, 448, 630
BaeGI GKGCMC 2 cut(s) 8, 411
BamHI GGATCC 1 cut(s) 362
BanI GGYRCC 2 cut(s) 76, 479
Bbv12I GWGCWC 3 cut(s) 8, 411, 442
BccI CCATC 2 cut(s) 265, 668
BcgI CGANNNNNNTGC 4 cut(s) 145, 179, 548, 582
BciT130I CCWGG 4 cut(s) 95, 360, 381, 498
BcnI CCSGG 4 cut(s) 134, 135, 537, 538
BfoI RGCGCY 1 cut(s) 380
Bme1390I CCNGG 8 cut(s) 95, 134, 135, 360, 381, 498, 537, 538
Bme18I GGWCC 4 cut(s) 56, 227, 448, 630
BmeT110I CYCGRG 2 cut(s) 133, 536
BmgBI CACGTC 2 cut(s) 9, 412
BmgT120I GGNCC 4 cut(s) 56, 227, 448, 630
BmiI GGNNCC 5 cut(s) 78, 229, 364, 481, 626
BmrFI CCNGG 8 cut(s) 95, 134, 135, 360, 381, 498, 537, 538
BmsI GCATC 2 cut(s) 325, 626
BpuMI CCSGG 4 cut(s) 134, 135, 537, 538
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 5 cut(s) 133, 322, 358, 536, 725
BsaWI WCCGGW 2 cut(s) 294, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 4 cut(s) 115, 244, 404, 447
Bse3DI GCAATG 1 cut(s) 231
BseAI TCCGGA 2 cut(s) 294, 627
BseBI CCWGG 4 cut(s) 95, 360, 381, 498
BseDI CCNNGG 5 cut(s) 133, 322, 358, 536, 725
BseGI GGATG 2 cut(s) 318, 721
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 4 cut(s) 115, 244, 404, 447
BseSI GKGCMC 2 cut(s) 8, 411
Bsh1236I CGCG 2 cut(s) 144, 547
BshNI GGYRCC 2 cut(s) 76, 479
BsiHKAI GWGCWC 3 cut(s) 8, 411, 442
BsiHKCI CYCGRG 2 cut(s) 133, 536
BsiSI CCGG 4 cut(s) 134, 295, 537, 628
BslFI GGGAC 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 150
BsoBI CYCGRG 2 cut(s) 133, 536
Bsp1286I GDGCHC 3 cut(s) 8, 411, 442
Bsp13I TCCGGA 2 cut(s) 294, 627
Bsp143I GATC 4 cut(s) 69, 362, 388, 472
Bsp19I CCATGG 2 cut(s) 322, 725
BspEI TCCGGA 2 cut(s) 294, 627
BspFNI CGCG 2 cut(s) 144, 547
BspLI GGNNCC 5 cut(s) 78, 229, 364, 481, 626
BspPI GGATC 3 cut(s) 357, 370, 383
BspQI GCTCTTC 1 cut(s) 430
BspT107I GGYRCC 2 cut(s) 76, 479
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 4 cut(s) 115, 244, 404, 447
BssECI CCNNGG 5 cut(s) 133, 322, 358, 536, 725
BssMI GATC 4 cut(s) 69, 362, 388, 472
BssNI GRCGYC 1 cut(s) 465
BssT1I CCWWGG 2 cut(s) 322, 725
Bst2UI CCWGG 4 cut(s) 95, 360, 381, 498
Bst4CI ACNGT 3 cut(s) 19, 422, 455
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 1 cut(s) 347
BstDSI CCRYGG 2 cut(s) 322, 725
BstF5I GGATG 2 cut(s) 318, 721
BstFNI CGCG 2 cut(s) 144, 547
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 72, 365, 391, 475
BstMBI GATC 4 cut(s) 69, 362, 388, 472
BstNI CCWGG 4 cut(s) 95, 360, 381, 498
BstNSI RCATGY 1 cut(s) 407
BstSCI CCNGG 8 cut(s) 93, 132, 133, 358, 379, 496, 535, 536
BstSLI GKGCMC 2 cut(s) 8, 411
BstUI CGCG 2 cut(s) 144, 547
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BtgI CCRYGG 2 cut(s) 322, 725
BtrI CACGTC 2 cut(s) 9, 412
BtsCI GGATG 2 cut(s) 318, 721
BtsIMutI CAGTG 4 cut(s) 393, 433, 440, 451
Cac8I GCNNGC 1 cut(s) 652
CfoI GCGC 1 cut(s) 379
Cfr13I GGNCC 4 cut(s) 56, 227, 448, 630
Cfr9I CCCGGG 2 cut(s) 133, 536
CspCI CAANNNNNGTGG 2 cut(s) 602, 637
CviAII CATG 8 cut(s) 121, 163, 323, 404, 524, 566, 726, 735
CviJI RGCY 3 cut(s) 222, 344, 625
CviKI_1 RGCY 3 cut(s) 222, 344, 625
DdeI CTNAG 1 cut(s) 347
DpnI GATC 4 cut(s) 71, 364, 390, 474
DpnII GATC 4 cut(s) 69, 362, 388, 472
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 322, 725
Eco47I GGWCC 4 cut(s) 56, 227, 448, 630
Eco88I CYCGRG 2 cut(s) 133, 536
EcoRII CCWGG 4 cut(s) 93, 358, 379, 496
EcoT14I CCWWGG 2 cut(s) 322, 725
ErhI CCWWGG 2 cut(s) 322, 725
FaeI CATG 8 cut(s) 124, 166, 326, 407, 527, 569, 729, 738
FaqI GGGAC 1 cut(s) 150
FatI CATG 8 cut(s) 120, 162, 322, 403, 523, 565, 725, 734
FauNDI CATATG 2 cut(s) 215, 618
FokI GGATG 2 cut(s) 305, 708
GlaI GCGC 1 cut(s) 378
HaeII RGCGCY 1 cut(s) 380
HapII CCGG 4 cut(s) 134, 295, 537, 628
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 8 cut(s) 124, 166, 326, 407, 527, 569, 729, 738
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 7 cut(s) 15, 126, 418, 469, 529, 543, 614
HindII GTYRAC 7 cut(s) 15, 126, 418, 469, 529, 543, 614
HinfI GANTC 3 cut(s) 300, 610, 703
HpaI GTTAAC 2 cut(s) 15, 418
HpaII CCGG 4 cut(s) 134, 295, 537, 628
Hpy188I TCNGA 3 cut(s) 60, 227, 463
Hpy188III TCNNGA 6 cut(s) 295, 304, 386, 628, 698, 707
Hpy99I CGWCG 4 cut(s) 13, 70, 416, 467
HpyAV CCTTC 2 cut(s) 195, 598
HpyCH4III ACNGT 3 cut(s) 19, 422, 455
HpyCH4IV ACGT 5 cut(s) 8, 290, 411, 465, 693
HpyCH4V TGCA 6 cut(s) 6, 166, 236, 409, 569, 639
HpyF3I CTNAG 1 cut(s) 347
HpySE526I ACGT 5 cut(s) 8, 290, 411, 465, 693
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 8 cut(s) 124, 166, 326, 407, 527, 569, 729, 738
HspAI GCGC 1 cut(s) 377
Kpn2I TCCGGA 2 cut(s) 294, 627
KspAI GTTAAC 2 cut(s) 15, 418
Kzo9I GATC 4 cut(s) 69, 362, 388, 472
LguI GCTCTTC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 630
LweI GCATC 2 cut(s) 325, 626
MaeII ACGT 5 cut(s) 8, 290, 411, 465, 693
MaeIII GTNAC 2 cut(s) 304, 707
MalI GATC 4 cut(s) 71, 364, 390, 474
MboI GATC 4 cut(s) 69, 362, 388, 472
MboII GAAGA 1 cut(s) 447
MfeI CAATTG 2 cut(s) 511, 640
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 3 cut(s) 8, 411, 442
MluCI AATT 3 cut(s) 511, 517, 640
MluI ACGCGT 2 cut(s) 142, 545
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 2 cut(s) 83, 486
MnlI CCTC 4 cut(s) 73, 292, 376, 695
MroI TCCGGA 2 cut(s) 294, 627
MseI TTAA 2 cut(s) 14, 417
MslI CAYNNNNRTG 1 cut(s) 119
MspI CCGG 4 cut(s) 134, 295, 537, 628
MspR9I CCNGG 8 cut(s) 95, 134, 135, 360, 381, 498, 537, 538
MunI CAATTG 2 cut(s) 511, 640
MvaI CCWGG 4 cut(s) 95, 360, 381, 498
MvnI CGCG 2 cut(s) 144, 547
NciI CCSGG 4 cut(s) 134, 135, 537, 538
NcoI CCATGG 2 cut(s) 322, 725
NdeI CATATG 2 cut(s) 215, 618
NdeII GATC 4 cut(s) 69, 362, 388, 472
NlaIII CATG 8 cut(s) 124, 166, 326, 407, 527, 569, 729, 738
NlaIV GGNNCC 5 cut(s) 78, 229, 364, 481, 626
NmeAIII GCCGAG 1 cut(s) 456
NmuCI GTSAC 2 cut(s) 304, 707
NspI RCATGY 1 cut(s) 407
PciSI GCTCTTC 1 cut(s) 430
PcsI WCGNNNNNNNCGW 2 cut(s) 309, 712
PfeI GAWTC 2 cut(s) 300, 703
PflMI CCANNNNNTGG 1 cut(s) 399
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
Psp1406I AACGTT 2 cut(s) 290, 693
Psp6I CCWGG 4 cut(s) 93, 358, 379, 496
PspGI CCWGG 4 cut(s) 93, 358, 379, 496
PspN4I GGNNCC 5 cut(s) 78, 229, 364, 481, 626
PspPI GGNCC 4 cut(s) 56, 227, 448, 630
PsuI RGATCY 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 430
SaqAI TTAA 2 cut(s) 14, 417
Sau3AI GATC 4 cut(s) 69, 362, 388, 472
Sau96I GGNCC 4 cut(s) 56, 227, 448, 630
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 8 cut(s) 95, 134, 135, 360, 381, 498, 537, 538
SduI GDGCHC 3 cut(s) 8, 411, 442
SetI ASST 8 cut(s) 11, 65, 284, 293, 414, 468, 687, 696
SfaNI GCATC 2 cut(s) 325, 626
SinI GGWCC 4 cut(s) 56, 227, 448, 630
SmaI CCCGGG 2 cut(s) 135, 538
SmiMI CAYNNNNRTG 1 cut(s) 119
Sse9I AATT 3 cut(s) 511, 517, 640
StyD4I CCNGG 8 cut(s) 93, 132, 133, 358, 379, 496, 535, 536
StyI CCWWGG 2 cut(s) 322, 725
TaaI ACNGT 3 cut(s) 19, 422, 455
TaiI ACGT 5 cut(s) 11, 293, 414, 468, 696
TaqI TCGA 1 cut(s) 65
TasI AATT 3 cut(s) 511, 517, 640
TfiI GAWTC 2 cut(s) 300, 703
Tru1I TTAA 2 cut(s) 14, 417
Tru9I TTAA 2 cut(s) 14, 417
TscAI CASTG 4 cut(s) 400, 433, 447, 458
TseFI GTSAC 2 cut(s) 304, 707
Tsp45I GTSAC 2 cut(s) 304, 707
TspDTI ATGAA 3 cut(s) 307, 576, 710
TspMI CCCGGG 2 cut(s) 133, 536
TspRI CASTG 4 cut(s) 400, 433, 447, 458
Van91I CCANNNNNTGG 1 cut(s) 399
VneI GTGCAC 2 cut(s) 4, 407
VpaK11BI GGWCC 4 cut(s) 56, 227, 448, 630
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 407
XmaI CCCGGG 2 cut(s) 133, 536
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.