Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

22265568 .. 22274941

Gene Structure 9374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00183170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTGCAAAGGGCCGTGGAACTATGCAAAGGCTCTTCTATTGCTGAAGAACTACGACGGCATCTCGGTGATTGCTCAAGTACCACTTCGGTTTTTGAACTTTTGGGTTAGGAACTTTGACATCCTTCCTCCGACCTTTGAGGAGAAAGATACTATTGCTTTAATAGGTGTGACTTTGGGGTTCTTGTATGAGCATCTGATTGGCAAATGTAATACTTATTTTCTGGTATCCCACAACTCCCTTGCTCTATGTCGAAGACTGAATTTGCTTATAAAAAGAAATCATGGAGCTGAGATCCAATTCATATCTTATCAAGTCAAGCAGCTAGCTCCTCGAAGCAAGAATGGGAGCTCTCGAAGCATTGTCGTTTTCTATTTGTGTGCCGCTTTAGCCCCGAGTATCTGCCCGAATCCTCTCGCCAAATGGCCCGGTCTTGATCCCACCAACTGGCATGTGCACGTCGTTAACGGTTTTGGTGGACAAAGAGCATTGGTTGTCCATTGTTGGTCCGACCTCGATGATCTTGGCACCCATACTCTTTATCCCGGTGGTGATTTCAACCGGCATTTTCATGTCAACTTGCCCGGGACAACGCGTTTCACTTGCGACTTCCATGCGGACAAACAACACGCTTTGTTTGATGTGTTTTGGAAGGAGAGTAAACATATGTGGCTTCGGACCAGATGTGACTGGAAAGCGTGCTTTTGGATTGCCAAAGATGATGGGATTTACCTCAAGAACATTCCGGCGAGTCGGCTGTGTCGGTGGCACAATTTGCTGTTGGTACACCATCGGATGGATGCGGTGATTACTAGGAGGAGTGGGATTCGGGAAGTAGTACCGGTGATCGCAGGGTTTTGGGGCGAGGTCTCGCTGCAGATACGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

296

Amino Acids

34.09

Weight (kDa)

9.34

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	151 - 247	7.6e-24	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AccB1I	GGYRCC	1 cut(s)	527
AccB7I	CCANNNNNTGG	2 cut(s)	447, 796
AccII	CGCG	1 cut(s)	595
AciI	CCGC	3 cut(s)	384, 617, 803
AclWI	GGATC	2 cut(s)	289, 431
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	3 cut(s)	81, 786, 840
AfiI	CCNNNNNNNGG	2 cut(s)	447, 796
AflIII	ACRYGT	1 cut(s)	593
AgeI	ACCGGT	1 cut(s)	841
AgsI	TTSAA	2 cut(s)	97, 559
AjiI	CACGTC	1 cut(s)	460
AluBI	AGCT	4 cut(s)	290, 325, 329, 351
AluI	AGCT	4 cut(s)	290, 325, 329, 351
Alw21I	GWGCWC	2 cut(s)	353, 459
Alw26I	GTCTC	1 cut(s)	874
Alw44I	GTGCAC	1 cut(s)	455
AlwI	GGATC	2 cut(s)	289, 431
Ama87I	CYCGRG	2 cut(s)	394, 584
AoxI	GGCC	2 cut(s)	11, 425
ApaLI	GTGCAC	1 cut(s)	455
ApeKI	GCWGC	2 cut(s)	322, 874
ApoI	RAATTY	1 cut(s)	262
AsiGI	ACCGGT	1 cut(s)	841
AspS9I	GGNCC	4 cut(s)	11, 426, 507, 678
AsuC2I	CCSGG	4 cut(s)	429, 546, 585, 586
AsuHPI	GGTGA	4 cut(s)	79, 563, 817, 856
AsuNHI	GCTAGC	1 cut(s)	325
AvaI	CYCGRG	2 cut(s)	394, 584
AvaII	GGWCC	2 cut(s)	507, 678
BaeGI	GKGCMC	1 cut(s)	459
BaeI	ACNNNNGTAYC	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	262
Bbv12I	GWGCWC	2 cut(s)	353, 459
BbvI	GCAGC	2 cut(s)	334, 861
BccI	CCATC	3 cut(s)	716, 790, 798
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	2 cut(s)	596, 630
BciVI	GTATCC	1 cut(s)	238
BcnI	CCSGG	4 cut(s)	429, 546, 585, 586
BcoDI	GTCTC	1 cut(s)	874
BfaI	CTAG	2 cut(s)	326, 813
BfmI	CTRYAG	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	238
BisI	GCNGC	3 cut(s)	323, 384, 875
BlsI	GCNGC	3 cut(s)	324, 385, 876
Bme1390I	CCNGG	4 cut(s)	429, 546, 585, 586
Bme18I	GGWCC	2 cut(s)	507, 678
BmeT110I	CYCGRG	2 cut(s)	394, 584
BmgBI	CACGTC	1 cut(s)	460
BmgT120I	GGNCC	4 cut(s)	11, 426, 507, 678
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	4 cut(s)	429, 546, 585, 586
BmsI	GCATC	3 cut(s)	69, 202, 790
BmtI	GCTAGC	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	262
BpuEI	CTTGAG	2 cut(s)	60, 719
BpuMI	CCSGG	4 cut(s)	429, 546, 585, 586
BsaI	GGTCTC	1 cut(s)	874
BsaJI	CCNNGG	2 cut(s)	14, 584
BsaWI	WCCGGW	1 cut(s)	841
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 796
Bse118I	RCCGGY	2 cut(s)	561, 841
Bse1I	ACTGG	2 cut(s)	452, 695
BseDI	CCNNGG	2 cut(s)	14, 584
BseGI	GGATG	3 cut(s)	120, 801, 805
BseLI	CCNNNNNNNGG	2 cut(s)	447, 796
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	452, 695
BseRI	GAGGAG	3 cut(s)	155, 321, 832
BseSI	GKGCMC	1 cut(s)	459
BseXI	GCAGC	2 cut(s)	334, 861
Bsh1236I	CGCG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	13, 427
BshNI	GGYRCC	1 cut(s)	527
BshTI	ACCGGT	1 cut(s)	841
BsiHKAI	GWGCWC	2 cut(s)	353, 459
BsiHKCI	CYCGRG	2 cut(s)	394, 584
BsiSI	CCGG	6 cut(s)	429, 546, 562, 585, 746, 842
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	447, 796
BsmAI	GTCTC	1 cut(s)	874
BsmFI	GGGAC	1 cut(s)	601
BsnI	GGCC	2 cut(s)	13, 427
Bso31I	GGTCTC	1 cut(s)	874
BsoBI	CYCGRG	2 cut(s)	394, 584
Bsp1286I	GDGCHC	2 cut(s)	353, 459
Bsp143I	GATC	4 cut(s)	294, 436, 520, 846
BspACI	CCGC	3 cut(s)	384, 617, 803
BspANI	GGCC	2 cut(s)	13, 427
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	529
BspMAI	CTGCAG	1 cut(s)	879
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	2 cut(s)	289, 431
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	874
BsrFI	RCCGGY	2 cut(s)	561, 841
BsrI	ACTGG	2 cut(s)	452, 695
BssAI	RCCGGY	2 cut(s)	561, 841
BssECI	CCNNGG	2 cut(s)	14, 584
BssMI	GATC	4 cut(s)	294, 436, 520, 846
Bst4CI	ACNGT	2 cut(s)	470, 885
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstC8I	GCNNGC	2 cut(s)	327, 700
BstDEI	CTNAG	1 cut(s)	291
BstDSI	CCRYGG	1 cut(s)	14
BstF5I	GGATG	3 cut(s)	120, 801, 805
BstFNI	CGCG	1 cut(s)	595
BstKTI	GATC	4 cut(s)	297, 439, 523, 849
BstMAI	GTCTC	1 cut(s)	874
BstMBI	GATC	4 cut(s)	294, 436, 520, 846
BstMWI	GCNNNNNNNGC	3 cut(s)	357, 389, 775
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	427, 544, 583, 584
BstSFI	CTRYAG	1 cut(s)	875
BstSLI	GKGCMC	1 cut(s)	459
BstUI	CGCG	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	334, 861
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	13, 427
BtgI	CCRYGG	1 cut(s)	14
BtrI	CACGTC	1 cut(s)	460
BtsCI	GGATG	3 cut(s)	120, 801, 805
Cac8I	GCNNGC	2 cut(s)	327, 700
Cfr10I	RCCGGY	2 cut(s)	561, 841
Cfr13I	GGNCC	4 cut(s)	11, 426, 507, 678
Cfr9I	CCCGGG	1 cut(s)	584
Csp6I	GTAC	3 cut(s)	80, 785, 839
CspAI	ACCGGT	1 cut(s)	841
CviAII	CATG	4 cut(s)	284, 452, 572, 614
CviQI	GTAC	3 cut(s)	80, 785, 839
DdeI	CTNAG	1 cut(s)	291
DpnI	GATC	4 cut(s)	296, 438, 522, 848
DpnII	GATC	4 cut(s)	294, 436, 520, 846
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	874
Eco47I	GGWCC	2 cut(s)	507, 678
Eco53kI	GAGCTC	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	2 cut(s)	394, 584
EcoICRI	GAGCTC	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	4 cut(s)	287, 455, 575, 617
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	4 cut(s)	283, 451, 571, 613
FauNDI	CATATG	1 cut(s)	666
Fnu4HI	GCNGC	3 cut(s)	323, 384, 875
FokI	GGATG	3 cut(s)	107, 808, 812
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	323, 384, 875
FspBI	CTAG	2 cut(s)	326, 813
GluI	GCNGC	3 cut(s)	323, 384, 875
HaeIII	GGCC	2 cut(s)	13, 427
HapII	CCGG	6 cut(s)	429, 546, 562, 585, 746, 842
Hin1II	CATG	4 cut(s)	287, 455, 575, 617
HincII	GTYRAC	2 cut(s)	466, 577
HindII	GTYRAC	2 cut(s)	466, 577
HinfI	GANTC	3 cut(s)	409, 751, 826
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	6 cut(s)	429, 546, 562, 585, 746, 842
HphI	GGTGA	4 cut(s)	79, 563, 817, 856
Hpy166II	GTNNAC	6 cut(s)	457, 466, 479, 577, 662, 787
Hpy188I	TCNGA	5 cut(s)	132, 198, 511, 678, 795
Hpy188III	TCNNGA	4 cut(s)	354, 434, 736, 830
Hpy8I	GTNNAC	6 cut(s)	457, 466, 479, 577, 662, 787
Hpy99I	CGWCG	2 cut(s)	59, 464
HpyAV	CCTTC	2 cut(s)	134, 646
HpyCH4III	ACNGT	2 cut(s)	470, 885
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	4 cut(s)	6, 26, 457, 877
HpyF10VI	GCNNNNNNNGC	3 cut(s)	357, 389, 775
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	4 cut(s)	287, 455, 575, 617
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	4 cut(s)	294, 436, 520, 846
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	287, 334, 348
Lsp1109I	GCAGC	2 cut(s)	334, 861
LweI	GCATC	3 cut(s)	69, 202, 790
MaeI	CTAG	2 cut(s)	326, 813
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	2 cut(s)	169, 686
MalI	GATC	4 cut(s)	296, 438, 522, 848
MboI	GATC	4 cut(s)	294, 436, 520, 846
MboII	GAAGA	3 cut(s)	26, 58, 267
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	2 cut(s)	353, 459
MluCI	AATT	3 cut(s)	262, 299, 772
MluI	ACGCGT	1 cut(s)	593
MlyI	GAGTC	1 cut(s)	760
MmeI	TCCRAC	2 cut(s)	155, 534
MnlI	CCTC	8 cut(s)	133, 138, 342, 423, 524, 743, 810, 859
MseI	TTAA	2 cut(s)	161, 465
MslI	CAYNNNNRTG	2 cut(s)	65, 570
MspI	CCGG	6 cut(s)	429, 546, 562, 585, 746, 842
MspR9I	CCNGG	4 cut(s)	429, 546, 585, 586
MvnI	CGCG	1 cut(s)	595
MwoI	GCNNNNNNNGC	3 cut(s)	357, 389, 775
NciI	CCSGG	4 cut(s)	429, 546, 585, 586
NdeI	CATATG	1 cut(s)	666
NdeII	GATC	4 cut(s)	294, 436, 520, 846
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	4 cut(s)	287, 455, 575, 617
NlaIV	GGNNCC	1 cut(s)	529
NmuCI	GTSAC	2 cut(s)	169, 686
NspI	RCATGY	1 cut(s)	455
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	409, 826
PflMI	CCANNNNNTGG	2 cut(s)	447, 796
PinAI	ACCGGT	1 cut(s)	841
PkrI	GCNGC	3 cut(s)	324, 385, 876
PleI	GAGTC	1 cut(s)	759
PpsI	GAGTC	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	272
Psp124BI	GAGCTC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	4 cut(s)	11, 426, 507, 678
PstI	CTGCAG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	294
RsaI	GTAC	3 cut(s)	81, 786, 840
RsaNI	GTAC	3 cut(s)	80, 785, 839
RseI	CAYNNNNRTG	2 cut(s)	65, 570
SacI	GAGCTC	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	2 cut(s)	161, 465
SatI	GCNGC	3 cut(s)	323, 384, 875
Sau3AI	GATC	4 cut(s)	294, 436, 520, 846
Sau96I	GGNCC	4 cut(s)	11, 426, 507, 678
SchI	GAGTC	1 cut(s)	760
ScrFI	CCNGG	4 cut(s)	429, 546, 585, 586
SduI	GDGCHC	2 cut(s)	353, 459
SfaNI	GCATC	3 cut(s)	69, 202, 790
SfcI	CTRYAG	1 cut(s)	875
SinI	GGWCC	2 cut(s)	507, 678
SmaI	CCCGGG	1 cut(s)	586
SmiMI	CAYNNNNRTG	2 cut(s)	65, 570
SmlI	CTYRAG	2 cut(s)	75, 734
SmoI	CTYRAG	2 cut(s)	75, 734
Sse9I	AATT	3 cut(s)	262, 299, 772
SsiI	CCGC	3 cut(s)	384, 617, 803
SspMI	CTAG	2 cut(s)	326, 813
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	4 cut(s)	427, 544, 583, 584
TaaI	ACNGT	2 cut(s)	470, 885
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	4 cut(s)	253, 334, 355, 516
TasI	AATT	3 cut(s)	262, 299, 772
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	409, 826
Tru1I	TTAA	2 cut(s)	161, 465
Tru9I	TTAA	2 cut(s)	161, 465
TseFI	GTSAC	2 cut(s)	169, 686
TseI	GCWGC	2 cut(s)	322, 874
Tsp45I	GTSAC	2 cut(s)	169, 686
TspDTI	ATGAA	2 cut(s)	292, 560
TspMI	CCCGGG	1 cut(s)	584
Van91I	CCANNNNNTGG	2 cut(s)	447, 796
VneI	GTGCAC	1 cut(s)	455
VpaK11BI	GGWCC	2 cut(s)	507, 678
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	455
XmaI	CCCGGG	1 cut(s)	584
XspI	CTAG	2 cut(s)	326, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.