Rh5CG302400

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000965
Physical Location & Seq
Forward (+)
33262559 .. 33274133
11575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG302400.1

Sequence Viewer

Length: 453 bp
ATGAGTGGTTTCAAGCTCTATGTGGTTGTGTTTGTGTCTTTAACATTCTTAGCCTTGAGTATCCCATGTTCTGCTGTGACATGGCATGTTCACGTCGTCAATGGACTGAGCTCTGGAAGAATTCTCTTCGTCCATTGCAAGTCTAAAGATAATGACCTCGGCATCCATAATCTTGCAGTCGGAACCGAAACCACTTGGAGTTTCAAAGAAAACATCATGGGGACAACACTTTTCTGGTGCTACCTGCGCACGGACCGTGAAGAGTACGCCAATTTTGATGTGTTCTGGTCGGAGCATAATCGCAAGTGGCTTCAGACTAGATGCGACTGGAAAGATTGCATATGGACCGCAAGAGATGACGGGGTTTACATAAAGAACATTCCTAACAACAGTGATGAGCTTATTCATCAATGGGGAGCGCATTGGCAATTGGAGTTTAGCATCACCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

150

Amino Acids

17.51

Weight (kDa)

6.13

Isoelectric Point (pI)

25.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 29 - 138 3.1e-29 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 248
Acc36I ACCTGC 1 cut(s) 252
AciI CCGC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 296
AfaI GTAC 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 13, 205
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 3 cut(s) 16, 111, 400
AluI AGCT 3 cut(s) 16, 111, 400
Alw21I GWGCWC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 2 cut(s) 249, 421
AspS9I GGNCC 2 cut(s) 253, 345
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 2 cut(s) 253, 345
BanII GRGCYC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 113
BciVI GTATCC 1 cut(s) 71
BfaI CTAG 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 252
BfuI GTATCC 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 253, 345
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 253, 345
BmiI GGNNCC 1 cut(s) 184
BmsI GCATC 2 cut(s) 171, 311
BpuEI CTTGAG 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 113
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 113
BspACI CCGC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 184
BspMI ACCTGC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 257, 392
Bst6I CTCTTC 2 cut(s) 131, 255
BstDEI CTNAG 2 cut(s) 49, 107
BstF5I GGATG 1 cut(s) 162
BstHHI GCGC 2 cut(s) 249, 421
BstMWI GCNNNNNNNGC 1 cut(s) 246
BstNSI RCATGY 1 cut(s) 89
BsuI GTATCC 1 cut(s) 71
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 252
CfoI GCGC 2 cut(s) 249, 421
Cfr13I GGNCC 2 cut(s) 253, 345
CpoI CGGWCCG 1 cut(s) 253
Csp6I GTAC 1 cut(s) 265
CspI CGGWCCG 1 cut(s) 253
CviAII CATG 4 cut(s) 66, 81, 86, 217
CviJI RGCY 5 cut(s) 16, 53, 111, 310, 400
CviKI_1 RGCY 5 cut(s) 16, 53, 111, 310, 400
CviQI GTAC 1 cut(s) 265
DdeI CTNAG 2 cut(s) 49, 107
Eam1104I CTCTTC 2 cut(s) 131, 255
EarI CTCTTC 2 cut(s) 131, 255
Ecl136II GAGCTC 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 113
Eco47I GGWCC 2 cut(s) 253, 345
Eco53kI GAGCTC 1 cut(s) 111
Eco57I CTGAAG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 111
EcoRI GAATTC 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 113
FaeI CATG 4 cut(s) 69, 84, 89, 220
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 65, 80, 85, 216
FauNDI CATATG 1 cut(s) 341
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 113
FspBI CTAG 1 cut(s) 318
FspI TGCGCA 1 cut(s) 248
GlaI GCGC 2 cut(s) 248, 420
HhaI GCGC 2 cut(s) 249, 421
Hin1II CATG 4 cut(s) 69, 84, 89, 220
Hin6I GCGC 2 cut(s) 247, 419
HinP1I GCGC 2 cut(s) 247, 419
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 2 cut(s) 91, 367
Hpy188I TCNGA 3 cut(s) 182, 292, 315
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 91, 367
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 2 cut(s) 257, 392
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 3 cut(s) 138, 176, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 49, 107
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 4 cut(s) 69, 84, 89, 220
HspAI GCGC 2 cut(s) 247, 419
LmnI GCTCC 2 cut(s) 292, 416
LpnPI CCDG 5 cut(s) 99, 220, 257, 271, 313
LweI GCATC 2 cut(s) 171, 311
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 3 cut(s) 118, 129, 272
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 3 cut(s) 120, 271, 428
MmeI TCCRAC 2 cut(s) 160, 270
MnlI CCTC 1 cut(s) 167
MseI TTAA 1 cut(s) 41
MunI CAATTG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 246
NdeI CATATG 1 cut(s) 341
NlaIII CATG 4 cut(s) 69, 84, 89, 220
NlaIV GGNNCC 1 cut(s) 184
NmeAIII GCCGAG 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 76
NsbI TGCGCA 1 cut(s) 248
NspI RCATGY 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 2 cut(s) 253, 345
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
RsaI GTAC 1 cut(s) 266
RsaNI GTAC 1 cut(s) 265
Rsr2I CGGWCCG 1 cut(s) 253
RsrII CGGWCCG 1 cut(s) 253
SacI GAGCTC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 41
Sau96I GGNCC 2 cut(s) 253, 345
SduI GDGCHC 1 cut(s) 113
SetI ASST 7 cut(s) 18, 96, 113, 159, 246, 402, 449
SfaNI GCATC 2 cut(s) 171, 311
SinI GGWCC 2 cut(s) 253, 345
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 3 cut(s) 120, 271, 428
SsiI CCGC 1 cut(s) 348
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 113
TaaI ACNGT 2 cut(s) 257, 392
TaiI ACGT 1 cut(s) 96
TasI AATT 3 cut(s) 120, 271, 428
Tru1I TTAA 1 cut(s) 41
Tru9I TTAA 1 cut(s) 41
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 395
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 2 cut(s) 253, 345
XapI RAATTY 1 cut(s) 120
XceI RCATGY 1 cut(s) 89
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.