Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

19403149 .. 19403586

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G208300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGAGCTTTCAAAGGATATGTGGTTTTCTTCGTCTGTGTAGCAATATTAGCCCTCAGTGCCCCATGTCTTGGAAGCCCTGGAATTCGTTATAATAAATGGCATGTGCACGTGGTTAACAACTTGGGCGCCGGAAAAACATTGTTTGCGCATTGTAAATCCAAAGACGACGATCTAGGCGAGCGAAACCTTGCACCGGGGACTGAGTTCAATTGGAGTTTCAAAGAGAATTTCTTTGGAACGACGTTGTATTGGTGCTACATGAGCACGGACCAGAAGCATGCAGCATTGGATGTGTTTTGGGTGGAGGGTGACCATAGTTGGCTTCAGTATAGATGCAATTGGAAAGATTGCATTTGGATTGCGAAAGATGATGGGATTTACATAAAGATTATTCCTGAAAATCGTGATGAGTTTTCTCATAAATGGGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

146

Amino Acids

16.89

Weight (kDa)

6.57

Isoelectric Point (pI)

18.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
Acc16I	TGCGCA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	128
AccB7I	CCANNNNNTGG	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	84, 229
AcuI	CTGAAG	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	112
AcyI	GRCGYC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	71, 196
AgsI	TTSAA	3 cut(s)	13, 211, 223
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	2 cut(s)	111, 269
Alw44I	GTGCAC	1 cut(s)	107
ApaLI	GTGCAC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	2 cut(s)	84, 229
AspLEI	GCGC	2 cut(s)	131, 151
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	271
BaeGI	GKGCMC	2 cut(s)	64, 111
BanI	GGYRCC	1 cut(s)	128
BbrPI	CACGTG	1 cut(s)	112
Bbv12I	GWGCWC	2 cut(s)	111, 269
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	81
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	176
BfoI	RGCGCY	1 cut(s)	132
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	81, 198
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	2 cut(s)	81, 198
BmsI	GCATC	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	79, 197
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 196
BseBI	CCWGG	1 cut(s)	81
BseDI	CCNNGG	2 cut(s)	79, 197
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	2 cut(s)	71, 196
BseMII	CTCAG	2 cut(s)	70, 195
BseSI	GKGCMC	2 cut(s)	64, 111
BseXI	GCAGC	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	128
BsiHKAI	GWGCWC	2 cut(s)	111, 269
BsiSI	CCGG	2 cut(s)	132, 197
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	71, 196
BsmFI	GGGAC	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	64, 111, 269
Bsp143I	GATC	1 cut(s)	172
BspCNI	CTCAG	2 cut(s)	69, 196
BspLI	GGNNCC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	79, 197
BssMI	GATC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	182, 282
BstDEI	CTNAG	2 cut(s)	56, 204
BstEII	GGTNACC	1 cut(s)	311
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	131, 151
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 59, 264
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	2 cut(s)	107, 284
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	79, 196
BstSLI	GKGCMC	2 cut(s)	64, 111
BstV1I	GCAGC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	182, 282
CfoI	GCGC	2 cut(s)	131, 151
Cfr13I	GGNCC	1 cut(s)	271
CviAII	CATG	4 cut(s)	66, 104, 262, 281
CviJI	RGCY	4 cut(s)	8, 53, 78, 325
CviKI_1	RGCY	4 cut(s)	8, 53, 78, 325
DdeI	CTNAG	2 cut(s)	56, 204
DinI	GGCGCC	1 cut(s)	130
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRI	GAATTC	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	130
EheI	GGCGCC	1 cut(s)	130
FaeI	CATG	4 cut(s)	69, 107, 265, 284
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	65, 103, 261, 280
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	130, 150
GluI	GCNGC	1 cut(s)	285
HaeII	RGCGCY	1 cut(s)	132
HapII	CCGG	2 cut(s)	132, 197
HhaI	GCGC	2 cut(s)	131, 151
Hin1I	GRCGYC	1 cut(s)	129
Hin1II	CATG	4 cut(s)	69, 107, 265, 284
Hin6I	GCGC	2 cut(s)	129, 149
HinP1I	GCGC	2 cut(s)	129, 149
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	132, 197
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	109, 118
Hpy188III	TCNNGA	2 cut(s)	398, 407
Hpy8I	GTNNAC	2 cut(s)	109, 118
Hpy99I	CGWCG	2 cut(s)	173, 247
HpyCH4IV	ACGT	2 cut(s)	111, 245
HpyCH4V	TGCA	5 cut(s)	109, 194, 284, 339, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 59, 264
HpyF3I	CTNAG	2 cut(s)	56, 204
HpySE526I	ACGT	2 cut(s)	111, 245
Hsp92I	GRCGYC	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	69, 107, 265, 284
HspAI	GCGC	2 cut(s)	129, 149
KasI	GGCGCC	1 cut(s)	128
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	66, 93, 145, 210, 287, 411
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	326
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	2 cut(s)	111, 245
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	22
MfeI	CAATTG	2 cut(s)	211, 340
MhlI	GDGCHC	3 cut(s)	64, 111, 269
MluCI	AATT	4 cut(s)	84, 211, 229, 340
Mly113I	GGCGCC	1 cut(s)	129
MnlI	CCTC	3 cut(s)	65, 301, 424
MseI	TTAA	1 cut(s)	117
MspI	CCGG	2 cut(s)	132, 197
MspR9I	CCNGG	2 cut(s)	81, 198
MunI	CAATTG	2 cut(s)	211, 340
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	50, 59, 264
NarI	GGCGCC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	4 cut(s)	69, 107, 265, 284
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	311
NsbI	TGCGCA	1 cut(s)	150
NspI	RCATGY	2 cut(s)	107, 284
PaeI	GCATGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	286
PluTI	GGCGCC	1 cut(s)	132
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	79
PspCI	CACGTG	1 cut(s)	112
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	81, 198
SduI	GDGCHC	3 cut(s)	64, 111, 269
SetI	ASST	5 cut(s)	10, 114, 192, 248, 435
SfaNI	GCATC	1 cut(s)	326
SfoI	GGCGCC	1 cut(s)	130
SinI	GGWCC	1 cut(s)	271
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	4 cut(s)	84, 211, 229, 340
SspDI	GGCGCC	1 cut(s)	128
SspI	AATATT	1 cut(s)	48
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	79, 196
TaiI	ACGT	2 cut(s)	114, 248
TasI	AATT	4 cut(s)	84, 211, 229, 340
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	311
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	71
VneI	GTGCAC	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	2 cut(s)	84, 229
XceI	RCATGY	2 cut(s)	107, 284
XspI	CTAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.