Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

21379400 .. 21383972

Gene Structure 4573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012691

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGTCGATCCCAAGACCCTCACCTGCGCCGTCCACCGTCGAAGACTGCTGGGACTGCATGCTCCCTGGCCCACCCAGCAGCAACAACTTCGGATCCGCAGACGTCAGCCCCTCCGGCCTCCTCGTATTCCCTGCTGGCAGCTCCATCTCCTTCATCGACACTCGTTCAATGCAGCTCGTCGTCTCCCTCCCCATGCCTCCCCCTCCCCCTCCCAATCCTCCTCCGCCACCGCCACGTCATCACTATCCCCCTTCGTCACCTCTGTCCGACAATGCCGGAGAGCAGACCATAATGCTCATAAGAGAATTTGATGGAGAAATCATCGAAGTGGCTGTCAATATTCCTAATATTTCTTCCGTTGAGGACAGTGATGATGAGGAGGAGGAGAATGAAGACACTGGGATTCCAATGGTTGTGAGTGTTTCAATGGAGAAGACTGTTCTAGCTAGCTCCTCAAAAACAAGAATGAGAGCTCTCAAAGGCATCGTCATTTTCTATTTGTGTGTAGCTTTAACCCTGAGTATATGTCCGGGATCCTTTGCCAAATGGCCCGGTCTTGATTTCACCAACTGGCATGTGCACGTTGTTAATGGTTTCAGTAGACAAAGAGCATTGGTGGTCCACTGTTGGTCCGACCTCGATGATTTGGGCACCCATACTCTTTATCTTGGTGGCGACTTCAACTGGCATTTCCATGTCAACTTGCCCGGGACAACGCGTTTCACTTGCGACTTTCATGCAGACAAACAACACGCTTTGTTTGATGTGTTTTGGAAGGAGAGTAAACATATGTGGCTTCGGACCAGATGCAACTGGAAAACGTGCTTTTGGATTGCGAAAGATGATGGGATTTACCTCAAAAACGTTCCTGAGAATCGTGACGAACGTATTCATCTATGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

303

Amino Acids

33.88

Weight (kDa)

5.21

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR11_1st	PF23751	23 - 70	4.4e-17	WDR11 first beta-propeller
Self-incomp_S1	PF05938	192 - 299	5.6e-25	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	31
AatII	GACGTC	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	31
AccB1I	GGYRCC	1 cut(s)	650
AccI	GTMKAC	1 cut(s)	601
AccII	CGCG	1 cut(s)	718
AciI	CCGC	3 cut(s)	96, 224, 230
AclI	AACGTT	1 cut(s)	864
AclWI	GGATC	4 cut(s)	87, 100, 528, 541
AcsI	RAATTY	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	102
AflIII	ACRYGT	1 cut(s)	716
AgsI	TTSAA	3 cut(s)	168, 426, 682
AjiI	CACGTC	1 cut(s)	236
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	141, 175, 446, 450, 473, 509
AluI	AGCT	6 cut(s)	141, 175, 446, 450, 473, 509
Alw21I	GWGCWC	2 cut(s)	475, 582
Alw26I	GTCTC	1 cut(s)	187
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	87, 100, 528, 541
Ama87I	CYCGRG	1 cut(s)	707
AoxI	GGCC	3 cut(s)	67, 115, 548
ApaLI	GTGCAC	1 cut(s)	578
ApeKI	GCWGC	3 cut(s)	78, 138, 172
ApoI	RAATTY	1 cut(s)	305
ArsI	GACNNNNNNTTYG	4 cut(s)	318, 350, 471, 503
Asp700I	GAANNNNTTC	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	5 cut(s)	68, 549, 619, 630, 801
AsuC2I	CCSGG	4 cut(s)	531, 552, 708, 709
AsuHPI	GGTGA	3 cut(s)	12, 249, 556
AsuNHI	GCTAGC	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	707
AvaII	GGWCC	3 cut(s)	619, 630, 801
BaeGI	GKGCMC	2 cut(s)	582, 653
BamHI	GGATCC	2 cut(s)	92, 533
BanI	GGYRCC	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	475
BbsI	GAAGAC	3 cut(s)	48, 399, 440
Bbv12I	GWGCWC	2 cut(s)	475, 582
BbvI	GCAGC	3 cut(s)	90, 150, 184
BccI	CCATC	3 cut(s)	152, 305, 839
BceAI	ACGGC	1 cut(s)	13
BcgI	CGANNNNNNTGC	4 cut(s)	70, 104, 719, 753
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	4 cut(s)	531, 552, 708, 709
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	2 cut(s)	443, 447
BfuAI	ACCTGC	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	114
BisI	GCNGC	3 cut(s)	79, 139, 173
BlsI	GCNGC	3 cut(s)	80, 140, 174
Bme1390I	CCNGG	5 cut(s)	66, 531, 552, 708, 709
Bme18I	GGWCC	3 cut(s)	619, 630, 801
BmeT110I	CYCGRG	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	236
BmgT120I	GGNCC	5 cut(s)	68, 549, 619, 630, 801
BmiI	GGNNCC	3 cut(s)	94, 535, 652
BmrFI	CCNGG	5 cut(s)	66, 531, 552, 708, 709
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	492, 797
BmtI	GCTAGC	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	408
BpiI	GAAGAC	3 cut(s)	48, 399, 440
BpuMI	CCSGG	4 cut(s)	531, 552, 708, 709
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	64, 707
Bse1I	ACTGG	4 cut(s)	403, 575, 689, 818
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	64, 707
BseMII	CTCAG	2 cut(s)	509, 861
BseNI	ACTGG	4 cut(s)	403, 575, 689, 818
BseRI	GAGGAG	6 cut(s)	110, 210, 392, 395, 398, 442
BseSI	GKGCMC	2 cut(s)	582, 653
BseXI	GCAGC	3 cut(s)	90, 150, 184
BseYI	CCCAGC	2 cut(s)	48, 74
Bsh1236I	CGCG	1 cut(s)	718
BshFI	GGCC	3 cut(s)	69, 117, 550
BshNI	GGYRCC	1 cut(s)	650
BsiHKAI	GWGCWC	2 cut(s)	475, 582
BsiHKCI	CYCGRG	1 cut(s)	707
BsiSI	CCGG	5 cut(s)	114, 276, 530, 552, 708
BslFI	GGGAC	2 cut(s)	65, 724
BsmAI	GTCTC	1 cut(s)	187
BsmBI	CGTCTC	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	65, 724
BsnI	GGCC	3 cut(s)	69, 117, 550
BsoBI	CYCGRG	1 cut(s)	707
Bsp1286I	GDGCHC	3 cut(s)	475, 582, 653
Bsp143I	GATC	3 cut(s)	6, 92, 533
BspACI	CCGC	3 cut(s)	96, 224, 230
BspANI	GGCC	3 cut(s)	69, 117, 550
BspCNI	CTCAG	2 cut(s)	510, 862
BspFNI	CGCG	1 cut(s)	718
BspLI	GGNNCC	3 cut(s)	94, 535, 652
BspMI	ACCTGC	1 cut(s)	31
BspOI	GCTAGC	1 cut(s)	450
BspPI	GGATC	4 cut(s)	87, 100, 528, 541
BspT107I	GGYRCC	1 cut(s)	650
BsrI	ACTGG	4 cut(s)	403, 575, 689, 818
BssECI	CCNNGG	2 cut(s)	64, 707
BssMI	GATC	3 cut(s)	6, 92, 533
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	4 cut(s)	37, 368, 439, 626
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	59, 136, 448
BstDEI	CTNAG	2 cut(s)	518, 870
BstFNI	CGCG	1 cut(s)	718
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	3 cut(s)	9, 95, 536
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	6, 92, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 75, 114
BstNI	CCWGG	1 cut(s)	66
BstNSI	RCATGY	2 cut(s)	61, 578
BstSCI	CCNGG	5 cut(s)	64, 529, 550, 706, 707
BstSLI	GKGCMC	2 cut(s)	582, 653
BstUI	CGCG	1 cut(s)	718
BstV1I	GCAGC	3 cut(s)	90, 150, 184
BstV2I	GAAGAC	3 cut(s)	48, 399, 440
BstX2I	RGATCY	2 cut(s)	92, 533
BstYI	RGATCY	2 cut(s)	92, 533
BsuRI	GGCC	3 cut(s)	69, 117, 550
BtrI	CACGTC	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	373, 396, 622
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	3 cut(s)	59, 136, 448
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	5 cut(s)	68, 549, 619, 630, 801
Cfr9I	CCCGGG	1 cut(s)	707
CviAII	CATG	6 cut(s)	58, 193, 575, 695, 737, 906
DdeI	CTNAG	2 cut(s)	518, 870
DpnI	GATC	3 cut(s)	8, 94, 535
DpnII	GATC	3 cut(s)	6, 92, 533
EciI	GGCGGA	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	473
Eco24I	GRGCYC	1 cut(s)	475
Eco47I	GGWCC	3 cut(s)	619, 630, 801
Eco53kI	GAGCTC	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	707
EcoICRI	GAGCTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	475
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	6 cut(s)	61, 196, 578, 698, 740, 909
FaqI	GGGAC	2 cut(s)	65, 724
FatI	CATG	6 cut(s)	57, 192, 574, 694, 736, 905
FauNDI	CATATG	1 cut(s)	789
FblI	GTMKAC	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	79, 139, 173
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	3 cut(s)	79, 139, 173
FspBI	CTAG	2 cut(s)	443, 447
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	79, 139, 173
GsaI	CCCAGC	2 cut(s)	52, 78
HaeIII	GGCC	3 cut(s)	69, 117, 550
HapII	CCGG	5 cut(s)	114, 276, 530, 552, 708
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	61, 196, 578, 698, 740, 909
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	2 cut(s)	403, 874
HpaII	CCGG	5 cut(s)	114, 276, 530, 552, 708
HphI	GGTGA	3 cut(s)	12, 249, 556
Hpy166II	GTNNAC	6 cut(s)	33, 580, 602, 622, 700, 785
Hpy188I	TCNGA	4 cut(s)	92, 268, 634, 801
Hpy188III	TCNNGA	3 cut(s)	557, 869, 878
Hpy8I	GTNNAC	6 cut(s)	33, 580, 602, 622, 700, 785
Hpy99I	CGWCG	2 cut(s)	41, 182
HpyAV	CCTTC	3 cut(s)	160, 261, 769
HpyCH4III	ACNGT	4 cut(s)	37, 368, 439, 626
HpyCH4IV	ACGT	6 cut(s)	102, 235, 582, 821, 864, 886
HpyCH4V	TGCA	5 cut(s)	57, 172, 580, 740, 810
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 75, 114
HpyF3I	CTNAG	2 cut(s)	518, 870
HpySE526I	ACGT	6 cut(s)	102, 235, 582, 821, 864, 886
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	61, 196, 578, 698, 740, 909
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	6, 92, 533
LmnI	GCTCC	3 cut(s)	66, 146, 455
Lsp1109I	GCAGC	3 cut(s)	90, 150, 184
LweI	GCATC	2 cut(s)	492, 797
MaeI	CTAG	2 cut(s)	443, 447
MaeII	ACGT	6 cut(s)	102, 235, 582, 821, 864, 886
MaeIII	GTNAC	2 cut(s)	255, 878
MalI	GATC	3 cut(s)	8, 94, 535
MboI	GATC	3 cut(s)	6, 92, 533
MboII	GAAGA	4 cut(s)	53, 345, 404, 445
MflI	RGATCY	2 cut(s)	92, 533
MhlI	GDGCHC	3 cut(s)	475, 582, 653
MluCI	AATT	1 cut(s)	305
MluI	ACGCGT	1 cut(s)	716
MmeI	TCCRAC	2 cut(s)	291, 657
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	2 cut(s)	512, 588
MslI	CAYNNNNRTG	2 cut(s)	326, 693
MspI	CCGG	5 cut(s)	114, 276, 530, 552, 708
MspR9I	CCNGG	5 cut(s)	66, 531, 552, 708, 709
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	718
MwoI	GCNNNNNNNGC	3 cut(s)	54, 75, 114
NciI	CCSGG	4 cut(s)	531, 552, 708, 709
NdeI	CATATG	1 cut(s)	789
NdeII	GATC	3 cut(s)	6, 92, 533
NheI	GCTAGC	1 cut(s)	446
NlaIII	CATG	6 cut(s)	61, 196, 578, 698, 740, 909
NlaIV	GGNNCC	3 cut(s)	94, 535, 652
NmuCI	GTSAC	2 cut(s)	255, 878
NspI	RCATGY	2 cut(s)	61, 578
PaeI	GCATGC	1 cut(s)	61
PaqCI	CACCTGC	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	1 cut(s)	883
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	2 cut(s)	403, 874
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	3 cut(s)	80, 140, 174
Psp124BI	GAGCTC	1 cut(s)	475
Psp1406I	AACGTT	1 cut(s)	864
Psp6I	CCWGG	1 cut(s)	64
PspFI	CCCAGC	2 cut(s)	48, 74
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	94, 535, 652
PspPI	GGNCC	5 cut(s)	68, 549, 619, 630, 801
PsuI	RGATCY	2 cut(s)	92, 533
RseI	CAYNNNNRTG	2 cut(s)	326, 693
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	512, 588
SatI	GCNGC	3 cut(s)	79, 139, 173
Sau3AI	GATC	3 cut(s)	6, 92, 533
Sau96I	GGNCC	5 cut(s)	68, 549, 619, 630, 801
ScrFI	CCNGG	5 cut(s)	66, 531, 552, 708, 709
SduI	GDGCHC	3 cut(s)	475, 582, 653
SfaNI	GCATC	2 cut(s)	492, 797
SinI	GGWCC	3 cut(s)	619, 630, 801
SmaI	CCCGGG	1 cut(s)	709
SmiMI	CAYNNNNRTG	2 cut(s)	326, 693
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	1 cut(s)	305
SsiI	CCGC	3 cut(s)	96, 224, 230
SspI	AATATT	2 cut(s)	340, 349
SspMI	CTAG	2 cut(s)	443, 447
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	5 cut(s)	64, 529, 550, 706, 707
TaaI	ACNGT	4 cut(s)	37, 368, 439, 626
TaiI	ACGT	6 cut(s)	105, 238, 585, 824, 867, 889
TaqI	TCGA	5 cut(s)	5, 39, 156, 324, 639
TasI	AATT	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	403, 874
Tru1I	TTAA	2 cut(s)	512, 588
Tru9I	TTAA	2 cut(s)	512, 588
TscAI	CASTG	3 cut(s)	373, 403, 629
TseFI	GTSAC	2 cut(s)	255, 878
TseI	GCWGC	3 cut(s)	78, 138, 172
Tsp45I	GTSAC	2 cut(s)	255, 878
TspDTI	ATGAA	4 cut(s)	142, 405, 725, 881
TspGWI	ACGGA	1 cut(s)	346
TspMI	CCCGGG	1 cut(s)	707
TspRI	CASTG	3 cut(s)	373, 403, 629
VneI	GTGCAC	1 cut(s)	578
VpaK11BI	GGWCC	3 cut(s)	619, 630, 801
XapI	RAATTY	1 cut(s)	305
XceI	RCATGY	2 cut(s)	61, 578
XmaI	CCCGGG	1 cut(s)	707
XmiI	GTMKAC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	2 cut(s)	443, 447
ZraI	GACGTC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.