Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

16649386 .. 16650283

Gene Structure 898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g19690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACCAGAATCAGCTGCGCGCCTACAAATATCAGAATTCCGATTCATTTCCTATCATCCAGCAGAGAAACAAGAATGGGAGCTCTCCAAGGCATAGTCCTCTTCTATTTGTGTGCAGCTTTAGCCCTGAGTATCTTCCCGGAATCCTCTGCCAAATGGCCGGGTCTTGATCCTACCAAGTGGCATATTCACGTCATCAACGGTTTCAGCGGAGGAAGACAACTGGTCGTCCACTGTTGGTCCGACATCGACGATCTTGGCTTCCATACTCTTAATCCCGGCGGCGAAACAAACTGGAGTTTCCATGTTAACTTGCCCGGGACAACAAAGTTCACTTGTGACTGGCGTGCAGGCAAGCAACATGCTACGTATCCTGTGTTTTGGAGAGAGGCTAGACATATGTGGCTTCGCTCCCATTGCGACTGGAAAGCCTGCTTTTGGACTGCCAAAGACGATGGGATTTACCTCAAGAACGTTCCGGCGGGTGTCGACGAGCTTATTCATCCATGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

173

Amino Acids

19.62

Weight (kDa)

7.71

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	62 - 170	6.1e-25	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	489
AccII	CGCG	1 cut(s)	20
AciI	CCGC	3 cut(s)	210, 282, 482
AclI	AACGTT	1 cut(s)	474
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	158
AcsI	RAATTY	1 cut(s)	36
AfiI	CCNNNNNNNGG	1 cut(s)	438
AhdI	GACNNNNNGTC	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	4 cut(s)	15, 83, 119, 496
AluI	AGCT	4 cut(s)	15, 83, 119, 496
Alw21I	GWGCWC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	164
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	2 cut(s)	15, 116
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	2 cut(s)	20, 22
AspS9I	GGNCC	1 cut(s)	240
AsuC2I	CCSGG	5 cut(s)	140, 162, 279, 318, 319
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	2, 128
BccI	CCATC	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	381
BcnI	CCSGG	5 cut(s)	140, 162, 279, 318, 319
BfaI	CTAG	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	3 cut(s)	16, 117, 283
BlsI	GCNGC	3 cut(s)	17, 118, 284
Bme1390I	CCNGG	5 cut(s)	140, 162, 279, 318, 319
Bme18I	GGWCC	1 cut(s)	240
BmeRI	GACNNNNNGTC	1 cut(s)	224
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	240
BmrFI	CCNGG	5 cut(s)	140, 162, 279, 318, 319
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	5 cut(s)	140, 162, 279, 318, 319
BsaAI	YACGTR	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	88, 317, 506
Bsc4I	CCNNNNNNNGG	1 cut(s)	438
Bse1I	ACTGG	4 cut(s)	228, 299, 347, 428
Bse3DI	GCAATG	1 cut(s)	415
BseDI	CCNNGG	3 cut(s)	88, 317, 506
BseGI	GGATG	2 cut(s)	56, 502
BseLI	CCNNNNNNNGG	1 cut(s)	438
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	4 cut(s)	228, 299, 347, 428
BsePI	GCGCGC	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	2, 128
BsgI	GTGCAG	2 cut(s)	135, 369
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	140, 161, 279, 318, 479
BslFI	GGGAC	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	438
BsmFI	GGGAC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp143I	GATC	2 cut(s)	169, 253
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	3 cut(s)	210, 282, 482
BspANI	GGCC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	20
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	4 cut(s)	228, 299, 347, 428
BssECI	CCNNGG	3 cut(s)	88, 317, 506
BssHII	GCGCGC	1 cut(s)	18
BssMI	GATC	2 cut(s)	169, 253
BssT1I	CCWWGG	2 cut(s)	88, 506
Bst4CI	ACNGT	2 cut(s)	203, 236
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	5 cut(s)	20, 348, 352, 356, 433
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	2 cut(s)	56, 502
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	20, 22
BstKTI	GATC	2 cut(s)	172, 256
BstMBI	GATC	2 cut(s)	169, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 417
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	5 cut(s)	138, 160, 277, 316, 317
BstSNI	TACGTA	1 cut(s)	369
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	2 cut(s)	2, 128
BstV2I	GAAGAC	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	160
BtgI	CCRYGG	1 cut(s)	506
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	56, 502
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	5 cut(s)	20, 348, 352, 356, 433
CfoI	GCGC	2 cut(s)	20, 22
Cfr13I	GGNCC	1 cut(s)	240
Cfr9I	CCCGGG	1 cut(s)	317
CviAII	CATG	4 cut(s)	305, 362, 507, 516
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	171, 255
DpnII	GATC	2 cut(s)	169, 253
DriI	GACNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	158
Eam1104I	CTCTTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	83
Eco105I	TACGTA	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	88, 506
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	240
Eco53kI	GAGCTC	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	88, 506
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	88, 506
FaeI	CATG	4 cut(s)	308, 365, 510, 519
FaiI	YATR	9 cut(s)	95, 186, 267, 306, 363, 399, 401, 508, 517
FaqI	GGGAC	1 cut(s)	334
FatI	CATG	4 cut(s)	304, 361, 506, 515
FauI	CCCGC	1 cut(s)	475
FauNDI	CATATG	1 cut(s)	399
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	16, 117, 283
FokI	GGATG	2 cut(s)	43, 489
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	16, 117, 283
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	2 cut(s)	19, 21
GluI	GCNGC	3 cut(s)	16, 117, 283
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	5 cut(s)	140, 161, 279, 318, 479
HhaI	GCGC	2 cut(s)	20, 22
Hin1II	CATG	4 cut(s)	308, 365, 510, 519
Hin6I	GCGC	2 cut(s)	18, 20
HinP1I	GCGC	2 cut(s)	18, 20
HincII	GTYRAC	2 cut(s)	310, 490
HindII	GTYRAC	2 cut(s)	310, 490
HinfI	GANTC	3 cut(s)	9, 43, 143
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	5 cut(s)	140, 161, 279, 318, 479
Hpy166II	GTNNAC	4 cut(s)	232, 310, 333, 490
Hpy188I	TCNGA	3 cut(s)	35, 42, 244
Hpy188III	TCNNGA	2 cut(s)	167, 469
Hpy8I	GTNNAC	4 cut(s)	232, 310, 333, 490
Hpy99I	CGWCG	2 cut(s)	254, 494
HpyCH4III	ACNGT	2 cut(s)	203, 236
HpyCH4IV	ACGT	3 cut(s)	192, 368, 474
HpyCH4V	TGCA	2 cut(s)	116, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 417
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	3 cut(s)	192, 368, 474
Hsp92II	CATG	4 cut(s)	308, 365, 510, 519
HspAI	GCGC	2 cut(s)	18, 20
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	2 cut(s)	169, 253
LmnI	GCTCC	2 cut(s)	80, 416
Lsp1109I	GCAGC	2 cut(s)	2, 128
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	3 cut(s)	192, 368, 474
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	2 cut(s)	171, 255
MboI	GATC	2 cut(s)	169, 253
MboII	GAAGA	3 cut(s)	94, 127, 228
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	5 cut(s)	110, 157, 206, 382, 476
MseI	TTAA	2 cut(s)	273, 309
MspA1I	CMGCKG	2 cut(s)	15, 210
MspI	CCGG	5 cut(s)	140, 161, 279, 318, 479
MspR9I	CCNGG	5 cut(s)	140, 162, 279, 318, 319
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	122, 417
NciI	CCSGG	5 cut(s)	140, 162, 279, 318, 319
NcoI	CCATGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	399
NdeII	GATC	2 cut(s)	169, 253
NlaIII	CATG	4 cut(s)	308, 365, 510, 519
NmuCI	GTSAC	1 cut(s)	338
NspI	RCATGY	1 cut(s)	365
PauI	GCGCGC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	9, 43, 143
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	17, 118, 284
Ppu21I	YACGTR	1 cut(s)	369
Psp124BI	GAGCTC	1 cut(s)	85
Psp1406I	AACGTT	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	240
PteI	GCGCGC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	85
SalI	GTCGAC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	273, 309
SatI	GCNGC	3 cut(s)	16, 117, 283
Sau3AI	GATC	2 cut(s)	169, 253
Sau96I	GGNCC	1 cut(s)	240
ScrFI	CCNGG	5 cut(s)	140, 162, 279, 318, 319
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	8 cut(s)	17, 85, 121, 195, 371, 468, 477, 498
SinI	GGWCC	1 cut(s)	240
SmaI	CCCGGG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
SnaBI	TACGTA	1 cut(s)	369
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	3 cut(s)	210, 282, 482
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	5 cut(s)	138, 160, 277, 316, 317
StyI	CCWWGG	2 cut(s)	88, 506
TaaI	ACNGT	2 cut(s)	203, 236
TaiI	ACGT	3 cut(s)	195, 371, 477
TaqI	TCGA	2 cut(s)	249, 489
TasI	AATT	1 cut(s)	36
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	3 cut(s)	9, 43, 143
Tru1I	TTAA	2 cut(s)	273, 309
Tru9I	TTAA	2 cut(s)	273, 309
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	15, 116
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	2 cut(s)	35, 491
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	365
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.