Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Forward (+)

34716950 .. 34730469

Gene Structure 13520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGAGTGGTTTCAAGCTCTATGTGGTTGCGCTTGTGTCTTTAACAATCTTAGCCTTGACTATCCCATGTTCTGCTGTGACGTGGCATGTTCACGTCGTCAATGGATTGAGTTCTGGAAGAATTCTCTTCGTCCATTGCAAGTCTAAAGATAATGATCTCGGCATCCATAATCTTGCAGTCGGAACCGAAACCACTTGGAGTTTCAGAGAAAACTTCATAGGGACAACACTTTTTTGGTGCTACCTGCGCACAGACCGTGAAGAGTATGCTGATTTTGATGTGTTCTGGTCGGAGCATAATCGCAAGTGGCTTCAGACCAGATGCAACTGGAAAGATTGCATATGGACCGCAAGAGATGACGGGGTTTACATAAAGAACATTCCTAACAACAGTGATGAGCTTATTCATCAATGGGGAACGCATTGGAATTTGGTTTGGATTTTCGATGATTTCATAATCGTCGTTTATGAGGATGGTGAAGCATCCAACATCTTCGAGCTCCATGAGCTGATGACGAGGAAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

175

Amino Acids

20.52

Weight (kDa)

5.54

Isoelectric Point (pI)

22.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Self-incomp_S1	PF05938	29 - 138	3.7e-29	Plant self-incompatibility protein S1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	520
Acc16I	TGCGCA	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	1 cut(s)	348
AcsI	RAATTY	2 cut(s)	120, 427
AcuI	CTGAAG	1 cut(s)	296
AgsI	TTSAA	1 cut(s)	13
AjiI	CACGTC	2 cut(s)	81, 94
AluBI	AGCT	4 cut(s)	16, 400, 499, 508
AluI	AGCT	4 cut(s)	16, 400, 499, 508
Alw21I	GWGCWC	1 cut(s)	501
ApoI	RAATTY	2 cut(s)	120, 427
AspLEI	GCGC	2 cut(s)	31, 249
AspS9I	GGNCC	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	501
BccI	CCATC	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	345
BmgBI	CACGTC	2 cut(s)	81, 94
BmgT120I	GGNCC	1 cut(s)	345
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	3 cut(s)	171, 311, 491
BsaBI	GATNNNNATC	1 cut(s)	153
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	133
Bse8I	GATNNNNATC	1 cut(s)	153
BseGI	GGATG	3 cut(s)	162, 478, 482
BseJI	GATNNNNATC	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	257, 392
Bst6I	CTCTTC	2 cut(s)	131, 255
BstDEI	CTNAG	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	162, 478, 482
BstHHI	GCGC	2 cut(s)	31, 249
BstKTI	GATC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 505
BstNSI	RCATGY	1 cut(s)	89
BtrI	CACGTC	2 cut(s)	81, 94
BtsCI	GGATG	3 cut(s)	162, 478, 482
BtsIMutI	CAGTG	1 cut(s)	397
BveI	ACCTGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	31, 249
Cfr13I	GGNCC	1 cut(s)	345
CviAII	CATG	3 cut(s)	66, 86, 503
CviJI	RGCY	6 cut(s)	16, 53, 310, 400, 499, 508
CviKI_1	RGCY	6 cut(s)	16, 53, 310, 400, 499, 508
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DrdI	GACNNNNNNGTC	1 cut(s)	520
DseDI	GACNNNNNNGTC	1 cut(s)	520
Eam1104I	CTCTTC	2 cut(s)	131, 255
EarI	CTCTTC	2 cut(s)	131, 255
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	499
EcoRI	GAATTC	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	3 cut(s)	69, 89, 506
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	3 cut(s)	65, 85, 502
FauNDI	CATATG	1 cut(s)	341
FokI	GGATG	3 cut(s)	149, 469, 485
FriOI	GRGCYC	1 cut(s)	501
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	2 cut(s)	30, 248
HhaI	GCGC	2 cut(s)	31, 249
Hin1II	CATG	3 cut(s)	69, 89, 506
Hin6I	GCGC	2 cut(s)	29, 247
HinP1I	GCGC	2 cut(s)	29, 247
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	91, 367
Hpy188I	TCNGA	4 cut(s)	182, 206, 292, 315
Hpy188III	TCNNGA	2 cut(s)	114, 525
Hpy8I	GTNNAC	2 cut(s)	91, 367
Hpy99I	CGWCG	2 cut(s)	98, 464
HpyCH4III	ACNGT	2 cut(s)	257, 392
HpyCH4IV	ACGT	2 cut(s)	80, 93
HpyCH4V	TGCA	4 cut(s)	138, 176, 324, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 505
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	2 cut(s)	80, 93
Hsp92II	CATG	3 cut(s)	69, 89, 506
HspAI	GCGC	2 cut(s)	29, 247
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	292, 504
LpnPI	CCDG	5 cut(s)	99, 257, 271, 313, 331
LweI	GCATC	3 cut(s)	171, 311, 491
MaeII	ACGT	2 cut(s)	80, 93
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	4 cut(s)	118, 129, 272, 484
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	2 cut(s)	120, 427
MmeI	TCCRAC	3 cut(s)	160, 270, 510
MnlI	CCTC	2 cut(s)	463, 510
MseI	TTAA	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	246, 505
NdeI	CATATG	1 cut(s)	341
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	3 cut(s)	69, 89, 506
NlaIV	GGNNCC	1 cut(s)	184
NmeAIII	GCCGAG	1 cut(s)	138
NmuCI	GTSAC	1 cut(s)	76
NsbI	TGCGCA	1 cut(s)	248
NspI	RCATGY	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	501
PspN4I	GGNNCC	1 cut(s)	184
PspPI	GGNCC	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	501
SetI	ASST	7 cut(s)	18, 83, 96, 246, 402, 501, 510
SfaNI	GCATC	3 cut(s)	171, 311, 491
SinI	GGWCC	1 cut(s)	345
Sse9I	AATT	2 cut(s)	120, 427
SsiI	CCGC	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	501
TaaI	ACNGT	2 cut(s)	257, 392
TaiI	ACGT	2 cut(s)	83, 96
TaqI	TCGA	2 cut(s)	444, 495
TasI	AATT	2 cut(s)	120, 427
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	76
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	205, 395, 442
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	345
XapI	RAATTY	2 cut(s)	120, 427
XceI	RCATGY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.