Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000284.1

Orthogroup ID

OG0000965

Physical Location & Seq

Genomic Coordinates Reverse (-)

98811 .. 99254

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000284.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atggcagctctcaaaagcattgtcgttctctatttgtgtgccgctttagccctgagtatctgcccggaatcctctgccaaatggcccggtcttgatcccaccaactggcatgtgcacgtcgttaacggtttcagtggacaaagagcattggttgtccattgttggtccgacctcgacgatcttggcatccatactctttatgctggtggtgacttcaactggcatttccatgtcaacttgcccggaacaactcgttttaattgggacttccatgcagacaaaaaacaagctttgtttgatgtgttttggagggagagtaaacatatgtggcttcggaccagatgtgactggaaagcgtgcttttggattgctaaagacgatgggatttacctcaagaacattccggcgagtcgtgacgagcttgttcatccatgggaaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Self-incomp_S1

Protein Analysis

147

Amino Acids

16.99

Weight (kDa)

6.48

Isoelectric Point (pI)

29.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16295 AT4G29035
fragaria_vesca	FvH4_2g19690 FvH4_2g19700 FvH4_2g19720 FvH4_2g19730 FvH4_2g20680
malus_domestica	MD05G1181800.v1.1 MD05G1182000.v1.1 MD10G1170200.v1.1
prunus_persica	Prupe.8G208200_v2.0.a1 Prupe.8G208300_v2.0.a1 Prupe.8G208400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0039321 RchiOBHm_Chr6g0285421 RchiOBHm_Chr6g0285431 RchiOBHm_Chr6g0285441
rosa_laevigata	RLG00000012531 RLG00000012641 RLG00000012642 RLG00000012691
rosa_multiflora	Rmu_co8284255.1_g000001 Rmu_sc0000199.1_g000011 Rmu_sc0000199.1_g000018 Rmu_sc0000199.1_g000023 Rmu_sc0000284.1_g000018 Rmu_sc0000284.1_g000023 Rmu_sc0000284.1_g000025 Rmu_sc0002520.1_g000005 Rmu_sc0006018.1_g000014 Rmu_sc0008415.1_g000004 Rmu_sc0010577.1_g000002 Rmu_sc0011217.1_g000016
rosa_roxburghii	Rroxscaffold_1G00040500 Rroxscaffold_7G00181840 Rroxscaffold_7G00183150 Rroxscaffold_7G00183170
rosa_rugosa	Rorug05G0178100 Rorug06G0174600 Rorug06G0174600 Rorug06G0174700 Rorug06G0184100
rosa_samantha	Rh5AG264300 Rh5CG302400 Rh6AG285800 Rh6AG296300 Rh6AG296400 Rh6BG287200 Rh6BG287300 Rh6BG300800 Rh6BG300900 Rh6CG288200 Rh6CG288300 Rh6DG281000 Rh6DG281100 Rh6DG281200
rosa_wichuraiana	Rw5G024790 Rw6G024530 Rw6G024540 Rw6G024550 Rw6G024560 Rw6G025550 Rw6G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	105
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	89
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	3 cut(s)	8, 290, 421
AluI	AGCT	3 cut(s)	8, 290, 421
Alw21I	GWGCWC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	83
ApaLI	GTGCAC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	1 cut(s)	38
AspS9I	GGNCC	3 cut(s)	84, 165, 336
AsuC2I	CCSGG	3 cut(s)	65, 87, 243
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	165, 336
BaeGI	GKGCMC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	374
BcnI	CCSGG	3 cut(s)	65, 87, 243
BisI	GCNGC	2 cut(s)	6, 42
BlsI	GCNGC	2 cut(s)	7, 43
Bme1390I	CCNGG	3 cut(s)	65, 87, 243
Bme18I	GGWCC	2 cut(s)	165, 336
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	84, 165, 336
BmrFI	CCNGG	3 cut(s)	65, 87, 243
BmsI	GCATC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	3 cut(s)	65, 87, 243
BsaJI	CCNNGG	1 cut(s)	431
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	110, 224, 353
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	2 cut(s)	186, 427
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	3 cut(s)	110, 224, 353
BseSI	GKGCMC	1 cut(s)	117
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	1 cut(s)	85
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	4 cut(s)	65, 87, 243, 404
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	94, 178
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	85
BspCNI	CTCAG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	110, 224, 353
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	2 cut(s)	94, 178
BssT1I	CCWWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	358
BstDEI	CTNAG	1 cut(s)	53
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	186, 427
BstKTI	GATC	2 cut(s)	97, 181
BstMBI	GATC	2 cut(s)	94, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	113
BstSCI	CCNGG	3 cut(s)	63, 85, 241
BstSLI	GKGCMC	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	431
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	186, 427
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	84, 165, 336
CviAII	CATG	5 cut(s)	110, 230, 272, 432, 441
CviJI	RGCY	6 cut(s)	8, 50, 85, 290, 331, 421
CviKI_1	RGCY	6 cut(s)	8, 50, 85, 290, 331, 421
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	96, 180
DpnII	GATC	2 cut(s)	94, 178
Eco130I	CCWWGG	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	165, 336
EcoT14I	CCWWGG	1 cut(s)	431
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	113, 233, 275, 435, 444
FaiI	YATR	9 cut(s)	111, 192, 201, 231, 273, 324, 326, 433, 442
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	5 cut(s)	109, 229, 271, 431, 440
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	6, 42
FokI	GGATG	2 cut(s)	173, 414
Fsp4HI	GCNGC	2 cut(s)	6, 42
GluI	GCNGC	2 cut(s)	6, 42
HaeIII	GGCC	1 cut(s)	85
HapII	CCGG	4 cut(s)	65, 87, 243, 404
Hin1II	CATG	5 cut(s)	113, 233, 275, 435, 444
HincII	GTYRAC	2 cut(s)	124, 235
HindII	GTYRAC	2 cut(s)	124, 235
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	2 cut(s)	68, 409
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	4 cut(s)	65, 87, 243, 404
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	5 cut(s)	115, 124, 137, 235, 320
Hpy188I	TCNGA	2 cut(s)	169, 336
Hpy188III	TCNNGA	3 cut(s)	92, 394, 413
Hpy8I	GTNNAC	5 cut(s)	115, 124, 137, 235, 320
Hpy99I	CGWCG	2 cut(s)	122, 179
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	115, 275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	47
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	5 cut(s)	113, 233, 275, 435, 444
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	94, 178
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	3 cut(s)	209, 344, 413
MalI	GATC	2 cut(s)	96, 180
MboI	GATC	2 cut(s)	94, 178
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	82, 182, 303, 401
MseI	TTAA	2 cut(s)	123, 258
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	4 cut(s)	65, 87, 243, 404
MspR9I	CCNGG	3 cut(s)	65, 87, 243
MwoI	GCNNNNNNNGC	1 cut(s)	47
NciI	CCSGG	3 cut(s)	65, 87, 243
NcoI	CCATGG	1 cut(s)	431
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	2 cut(s)	94, 178
NlaIII	CATG	5 cut(s)	113, 233, 275, 435, 444
NmuCI	GTSAC	3 cut(s)	209, 344, 413
NspI	RCATGY	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	68
PflMI	CCANNNNNTGG	1 cut(s)	105
PkrI	GCNGC	2 cut(s)	7, 43
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
PspPI	GGNCC	3 cut(s)	84, 165, 336
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	2 cut(s)	123, 258
SatI	GCNGC	2 cut(s)	6, 42
Sau3AI	GATC	2 cut(s)	94, 178
Sau96I	GGNCC	3 cut(s)	84, 165, 336
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	3 cut(s)	65, 87, 243
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	6 cut(s)	10, 120, 174, 292, 393, 423
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	2 cut(s)	165, 336
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	63, 85, 241
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	174
TasI	AATT	1 cut(s)	259
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	123, 258
Tru9I	TTAA	2 cut(s)	123, 258
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	3 cut(s)	209, 344, 413
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	3 cut(s)	209, 344, 413
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	105
VneI	GTGCAC	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	165, 336
XceI	RCATGY	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.