AT5G03610

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001140
Physical Location & Seq
Forward (+)
915385 .. 918485
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03610.1

Sequence Viewer

Length: 1080 bp
ATGGATTCTTTGATCAAACTCTTCTTCTGCCTCTTTATCTTCTTATGTACTTCGCTCTTATTTGGAGAAATCAATGGAGTGGAGGGTTCAAATCAAAATCATCACTTGTATCCATTTAGGCCAACGAAGCTCTTTGTGTTCGGAGATTCTTATGCCGATACCGGAAACATTAAAAAGGCTTTCTCTAGCTCTTGGAAATTCCCTTACGGTATCACTTTCCCCGGAAAACCCGCTGGCCGTTTCTCCGATGGCCGTGTGGCAACAGATTTTCTAGCTAAATTTGTGGGGATAAAATCACCAATCCCATACTTTTGGAAAGATTACGCGGGAAAGAAACGATTACAGTACGGAATGAATTTTGCGTACGGAGGAACAGGAGTGTTCAACACTCAAACTCCATTGCCTAACATGACAACTCAAATCGACATCTTCCAGAACATTCTCACCACCGGCGACATCTACTATCCTCCCGAGCTTACTTCATCCGTGGCTCTCGTCAGTGTCGCTGGCAACGACTACTCCAATTTCATCGCCCTAAACCGCCCTGCCTCTGAATTCCCAGCATTCATAAAGCAAGTTGTGGATCAAACAGAGGTGAATTTGAGACGGATCCACGCTTTGGGAGTGAAAAAGATTGCAGTACCATCCCTGCAACCGCTTGGTTGTCTCCCTCCCTTCACATTCGTAACCTCGTTCCAGCGTTGCAACGAGACACAAAACGCTTTAGTTAACCTCCACAACAACTTATTGCAGCAAGTTGTGGCAAAGCTCAATAACGAGACTAAACAGTCGACTTTCATCATCCTTGATCTCTACAATGCTTTCTTGACTGTGTTCAAGAACAAAGGATCTAATCCAGGGAGTACAAGGTTTGAGAGTCCATTAAAGCCGTGTTGCGTAGGTGTGAGCCGCGAGTATAACTGTGGAAGTGTGGATGAGAAGGGAGTGAAGAAGTATATTGTATGTGATAATCCTAAAACTGCTTTCTTTTGGGATGGACTTCACCCTACAGAAGAAGGATGGAGATCGGTTTACTCTGTTTTACGCGAAAGTCTTACCGCGTCTTTGATTAAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

359

Amino Acids

40.11

Weight (kDa)

9.04

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 340 6.2e-32 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 787
AccB7I CCANNNNNTGG 1 cut(s) 619
AccI GTMKAC 1 cut(s) 791
AccII CGCG 4 cut(s) 326, 912, 1047, 1061
AciI CCGC 6 cut(s) 231, 326, 541, 656, 910, 1059
AclWI GGATC 4 cut(s) 591, 604, 617, 856
AcoI YGGCCR 2 cut(s) 235, 250
AcsI RAATTY 5 cut(s) 197, 278, 355, 554, 598
AfaI GTAC 5 cut(s) 49, 347, 365, 642, 865
AfiI CCNNNNNNNGG 1 cut(s) 619
AgsI TTSAA 3 cut(s) 90, 385, 838
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 5 cut(s) 130, 189, 275, 475, 769
AluI AGCT 5 cut(s) 130, 189, 275, 475, 769
Alw26I GTCTC 4 cut(s) 598, 671, 704, 773
AlwI GGATC 4 cut(s) 591, 604, 617, 856
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 3 cut(s) 119, 235, 250
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 5 cut(s) 197, 278, 355, 554, 598
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 4 cut(s) 288, 436, 607, 995
AvaI CYCGRG 1 cut(s) 470
BamHI GGATCC 1 cut(s) 609
BbvI GCAGC 1 cut(s) 763
BccI CCATC 4 cut(s) 242, 652, 989, 1014
BceAI ACGGC 3 cut(s) 222, 237, 874
BciT130I CCWGG 1 cut(s) 858
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 4 cut(s) 598, 671, 704, 773
BfaI CTAG 2 cut(s) 186, 272
BfmI CTRYAG 1 cut(s) 1008
BfuI GTATCC 1 cut(s) 120
BisI GCNGC 2 cut(s) 752, 910
BlsI GCNGC 2 cut(s) 753, 911
Bme1390I CCNGG 2 cut(s) 222, 858
BmeT110I CYCGRG 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 222, 858
BpuMI CCSGG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 1024
BsaJI CCNNGG 3 cut(s) 220, 486, 857
BsaWI WCCGGW 1 cut(s) 161
BsaXI ACNNNNNCTCC 4 cut(s) 379, 409, 503, 533
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse118I RCCGGY 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 1024
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 3 cut(s) 220, 486, 857
BseGI GGATG 6 cut(s) 482, 644, 801, 940, 1000, 1025
BseJI GATNNNNATC 1 cut(s) 1024
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMI GCAATG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 763
BseYI CCCAGC 1 cut(s) 559
Bsh1236I CGCG 4 cut(s) 326, 912, 1047, 1061
BshFI GGCC 3 cut(s) 121, 237, 252
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 162, 222, 450
BsiWI CGTACG 1 cut(s) 363
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 4 cut(s) 598, 671, 704, 773
BsmBI CGTCTC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 563
BsnI GGCC 3 cut(s) 121, 237, 252
BsoBI CYCGRG 1 cut(s) 470
Bsp143I GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
BspACI CCGC 6 cut(s) 231, 326, 541, 656, 910, 1059
BspANI GGCC 3 cut(s) 121, 237, 252
BspFNI CGCG 4 cut(s) 326, 912, 1047, 1061
BspLI GGNNCC 1 cut(s) 611
BspPI GGATC 4 cut(s) 591, 604, 617, 856
BsrDI GCAATG 1 cut(s) 398
BsrFI RCCGGY 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 3 cut(s) 220, 486, 857
BssMI GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 5 cut(s) 209, 345, 789, 832, 923
Bst6I CTCTTC 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 235, 508
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 6 cut(s) 482, 644, 801, 940, 1000, 1025
BstFNI CGCG 4 cut(s) 326, 912, 1047, 1061
BstKTI GATC 6 cut(s) 15, 586, 612, 811, 851, 1028
BstMAI GTCTC 4 cut(s) 598, 671, 704, 773
BstMBI GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 2 cut(s) 220, 856
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 4 cut(s) 326, 912, 1047, 1061
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 2 cut(s) 609, 848
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 2 cut(s) 609, 848
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 121, 237, 252
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 6 cut(s) 482, 644, 801, 940, 1000, 1025
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 235, 508
Cfr10I RCCGGY 1 cut(s) 449
CseI GACGC 1 cut(s) 1050
Csp6I GTAC 5 cut(s) 48, 346, 364, 641, 864
CviAII CATG 1 cut(s) 409
CviQI GTAC 5 cut(s) 48, 346, 364, 641, 864
DpnI GATC 6 cut(s) 14, 585, 611, 810, 850, 1027
DpnII GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
DrdI GACNNNNNNGTC 1 cut(s) 787
DseDI GACNNNNNNGTC 1 cut(s) 787
EaeI YGGCCR 2 cut(s) 235, 250
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 554
EcoRII CCWGG 1 cut(s) 856
Esp3I CGTCTC 1 cut(s) 598
FaeI CATG 1 cut(s) 412
FaiI YATR 8 cut(s) 46, 153, 307, 410, 569, 918, 957, 964
FatI CATG 1 cut(s) 408
FauI CCCGC 2 cut(s) 238, 319
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 2 cut(s) 752, 910
FokI GGATG 6 cut(s) 469, 631, 788, 947, 1007, 1032
Fsp4HI GCNGC 2 cut(s) 752, 910
FspBI CTAG 2 cut(s) 186, 272
GluI GCNGC 2 cut(s) 752, 910
GsaI CCCAGC 1 cut(s) 563
HaeIII GGCC 3 cut(s) 121, 237, 252
HapII CCGG 3 cut(s) 162, 222, 450
HgaI GACGC 1 cut(s) 1050
Hin1II CATG 1 cut(s) 412
HincII GTYRAC 2 cut(s) 730, 792
HindII GTYRAC 2 cut(s) 730, 792
HinfI GANTC 3 cut(s) 5, 146, 877
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 3 cut(s) 162, 222, 450
HphI GGTGA 4 cut(s) 288, 436, 607, 995
Hpy166II GTNNAC 3 cut(s) 730, 792, 1033
Hpy188I TCNGA 3 cut(s) 143, 247, 553
Hpy188III TCNNGA 4 cut(s) 433, 470, 826, 838
Hpy8I GTNNAC 3 cut(s) 730, 792, 1033
HpyAV CCTTC 3 cut(s) 685, 934, 1010
HpyCH4III ACNGT 5 cut(s) 209, 345, 789, 832, 923
HpyCH4V TGCA 4 cut(s) 638, 652, 705, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
Hsp92II CATG 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 12
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
Lsp1109I GCAGC 1 cut(s) 763
MaeI CTAG 2 cut(s) 186, 272
MaeIII GTNAC 1 cut(s) 685
MalI GATC 6 cut(s) 14, 585, 611, 810, 850, 1027
MboI GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
MboII GAAGA 6 cut(s) 13, 16, 31, 421, 961, 1025
MflI RGATCY 2 cut(s) 609, 848
MluCI AATT 6 cut(s) 197, 278, 355, 523, 554, 598
MlyI GAGTC 1 cut(s) 886
MnlI CCTC 9 cut(s) 41, 76, 362, 477, 559, 586, 681, 700, 743
MseI TTAA 4 cut(s) 171, 729, 884, 1071
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 3 cut(s) 162, 222, 450
MspR9I CCNGG 2 cut(s) 222, 858
Mva1269I GAATGC 1 cut(s) 563
MvaI CCWGG 1 cut(s) 858
MvnI CGCG 4 cut(s) 326, 912, 1047, 1061
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 222
NdeII GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 611
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PctI GAATGC 1 cut(s) 563
PfeI GAWTC 2 cut(s) 5, 146
Pfl23II CGTACG 1 cut(s) 363
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 2 cut(s) 753, 911
PleI GAGTC 1 cut(s) 885
PpsI GAGTC 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 559
PspGI CCWGG 1 cut(s) 856
PspLI CGTACG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 611
PsuI RGATCY 2 cut(s) 609, 848
RsaI GTAC 5 cut(s) 49, 347, 365, 642, 865
RsaNI GTAC 5 cut(s) 48, 346, 364, 641, 864
SalI GTCGAC 1 cut(s) 790
SaqAI TTAA 4 cut(s) 171, 729, 884, 1071
SatI GCNGC 2 cut(s) 752, 910
Sau3AI GATC 6 cut(s) 12, 583, 609, 808, 848, 1025
SchI GAGTC 1 cut(s) 886
ScrFI CCNGG 2 cut(s) 222, 858
SfcI CTRYAG 1 cut(s) 1008
SgrAI CRCCGGYG 1 cut(s) 449
Sse9I AATT 6 cut(s) 197, 278, 355, 523, 554, 598
SsiI CCGC 6 cut(s) 231, 326, 541, 656, 910, 1059
SspMI CTAG 2 cut(s) 186, 272
StyD4I CCNGG 2 cut(s) 220, 856
TaaI ACNGT 5 cut(s) 209, 345, 789, 832, 923
TaqI TCGA 2 cut(s) 423, 791
TasI AATT 6 cut(s) 197, 278, 355, 523, 554, 598
TatI WGTACW 2 cut(s) 47, 863
TauI GCSGC 1 cut(s) 912
TfiI GAWTC 2 cut(s) 5, 146
Tru1I TTAA 4 cut(s) 171, 729, 884, 1071
Tru9I TTAA 4 cut(s) 171, 729, 884, 1071
TscAI CASTG 1 cut(s) 505
TseI GCWGC 1 cut(s) 751
TspDTI ATGAA 5 cut(s) 368, 471, 517, 556, 787
TspGWI ACGGA 4 cut(s) 363, 381, 475, 622
TspRI CASTG 1 cut(s) 505
Van91I CCANNNNNTGG 1 cut(s) 619
XapI RAATTY 5 cut(s) 197, 278, 355, 554, 598
XmiI GTMKAC 1 cut(s) 791
XspI CTAG 2 cut(s) 186, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.