Rmu_sc0000408.1_g000018

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000408.1
OG0001140
Physical Location & Seq
Reverse (-)
47391 .. 47947
557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000408.1_g000018.1.cds

Sequence Viewer

Length: 231 bp
atgtccgtgctgaagaataaaggagaccatccaggaagcataaagtttgagaacccgttgaggccatgttgtgttggcgattgtgggagtgtcaatgagagtggggcgaagaagtacaccatatgcgacaacccgaaatctgcattcttttgggacggtgctcaccctacccaacagggctggcttgctgtgtattcagctttgcaaggaacacttgaagaattgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

76

Amino Acids

8.31

Weight (kDa)

6.02

Isoelectric Point (pI)

27.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 32
AfaI GTAC 2 cut(s) 116, 227
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 18
AoxI GGCC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 163
BccI CCATC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 1 cut(s) 229
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 28
BshFI GGCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 163
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 1 cut(s) 64
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 163
BspANI GGCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 182, 186
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 31
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 2 cut(s) 182, 186
Csp6I GTAC 2 cut(s) 115, 226
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 1 cut(s) 66
CviJI RGCY 4 cut(s) 64, 180, 184, 200
CviKI_1 RGCY 4 cut(s) 64, 180, 184, 200
CviQI GTAC 2 cut(s) 115, 226
Eco31I GGTCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 31
FaeI CATG 1 cut(s) 69
FaiI YATR 4 cut(s) 41, 67, 122, 124
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 65
FauNDI CATATG 1 cut(s) 122
FokI GGATG 1 cut(s) 15
FspBI CTAG 1 cut(s) 229
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 1 cut(s) 69
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 117
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 2 cut(s) 143, 205
Hsp92II CATG 1 cut(s) 69
LpnPI CCDG 4 cut(s) 18, 45, 161, 166
MaeI CTAG 1 cut(s) 229
MboII GAAGA 3 cut(s) 25, 121, 230
MhlI GDGCHC 1 cut(s) 163
MluCI AATT 1 cut(s) 221
MnlI CCTC 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 122
NlaIII CATG 1 cut(s) 69
PctI GAATGC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 31
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
RsaI GTAC 2 cut(s) 116, 227
RsaNI GTAC 2 cut(s) 115, 226
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 163
SetI ASST 1 cut(s) 202
Sse9I AATT 1 cut(s) 221
SspMI CTAG 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 158
TasI AATT 1 cut(s) 221
TatI WGTACW 2 cut(s) 114, 225
XspI CTAG 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.