Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000025.1

Orthogroup ID

OG0001140

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2660

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000025.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 773 bp

ctaagtttgtaggggtgaagtctccaataccatacaaatttagaaatgtcggagttaaacatttgaaatacggaatgaatttcgcatatggaggcaccggtgtgttcaataccttggttgcggcaccaaacatgaccacccaaatcgatttttttcagcaattcatcaaagactccgttttcaatgcccaagacctacactcctccgtggcactgatcactcttgctggcaatgactacgcatattacctggccctgaataattcttctgagggttttaaacctttcatcacatcagttgtaaatcaattaagtgtgaacttgaaacgcgtctatgacttgggagtgaagaaaatagttgttacagctctacaacctttgggatgtcttcctggcagcacagccgaattctcattccagaagtgcaatggaacacaaaacttgctggtcggtttccacaacctcttgttgcagcaagctatagccaagttgaacaatgaatccaagagttctttcatcgttctcgatctatatacctcattcatgtccgtgctgaagaataaaggagaccatccaggaagcataaagtttgagaacccgttgaggccatgttgtgttggcgattgtgggagtgtcgatgagagtggggcgaagaagtacaccatatgcgacaacccgaaatctgcattcttttgggacggtgctcaccctacccaacagggctggcttgctgtgtattcagctttgcaaggaacacttgaagaattgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

256

Amino Acids

28.12

Weight (kDa)

8.64

Isoelectric Point (pI)

24.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09930 AT3G09930 AT5G03610
fragaria_vesca	FvH4_6g18290 FvH4_6g18330 FvH4_7g05761 FvH4_7g05772
malus_domestica	MD02G1255500.v1.1 MD07G1066000.v1.1 MD12G1022800.v1.1 MD14G1019600.v1.1
prunus_persica	Prupe.2G080100_v2.0.a1 Prupe.2G080200_v2.0.a1 Prupe.2G080500_v2.0.a1 Prupe.2G080800_v2.0.a1 Prupe.2G081000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1
pyrus_communis	pycom02g21640 pycom07g05060 pycom12g02120 pycom14g01920
rosa_chinensis	RchiOBHm_Chr1g0332821 RchiOBHm_Chr1g0332841 RchiOBHm_Chr3g0472731 RchiOBHm_Chr3g0472801
rosa_laevigata	RLG00000024059 RLG00000029642
rosa_multiflora	Rmu_co8306661.1_g000001 Rmu_sc0000408.1_g000018 Rmu_sc0001786.1_g000003 Rmu_sc0005519.1_g000002 Rmu_sc0005608.1_g000010 Rmu_ssc0000025.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317950 Rroxscaffold_6G00408630
rosa_rugosa	Rorug01G0103200 Rorug01G0103300 Rorug03G0127600 Rorug03G0127700
rosa_samantha	Rh1AG128500 Rh1BG097900 Rh1CG122300 Rh1DG134100 Rh3AG180100 Rh3AG180600 Rh3BG206200 Rh3BG206800 Rh3CG203200 Rh3CG204000 Rh3CG221600 Rh3CG222400 Rh3DG169100 Rh3DG169500
rosa_wichuraiana	Rw0G004970 Rw1G010490 Rw3G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	94, 123
AccII	CGCG	1 cut(s)	329
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	3 cut(s)	37, 78, 406
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	2 cut(s)	658, 769
AflIII	ACRYGT	1 cut(s)	327
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	6 cut(s)	66, 108, 183, 324, 492, 760
AjnI	CCWGG	3 cut(s)	248, 390, 573
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AleI	CACNNNNGTG	1 cut(s)	100
AloI	GAACNNNNNNTCC	2 cut(s)	484, 516
AluBI	AGCT	3 cut(s)	367, 478, 742
AluI	AGCT	3 cut(s)	367, 478, 742
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	2 cut(s)	26, 560
AoxI	GGCC	2 cut(s)	251, 604
ApeKI	GCWGC	2 cut(s)	395, 471
ApoI	RAATTY	3 cut(s)	37, 78, 406
AsiGI	ACCGGT	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	27, 697
BanI	GGYRCC	2 cut(s)	94, 123
BbsI	GAAGAC	1 cut(s)	379
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	2 cut(s)	407, 483
BccI	CCATC	1 cut(s)	578
BciT130I	CCWGG	3 cut(s)	250, 392, 575
BclI	TGATCA	1 cut(s)	215
BcoDI	GTCTC	2 cut(s)	26, 560
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	1 cut(s)	479
BisI	GCNGC	3 cut(s)	122, 396, 472
BlsI	GCNGC	3 cut(s)	123, 397, 473
Bme1390I	CCNGG	3 cut(s)	250, 392, 575
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	2 cut(s)	96, 125
BmrFI	CCNGG	3 cut(s)	250, 392, 575
BpiI	GAAGAC	1 cut(s)	379
Bsa29I	ATCGAT	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	113, 206
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse118I	RCCGGY	1 cut(s)	97
Bse3DI	GCAATG	2 cut(s)	237, 432
BseBI	CCWGG	3 cut(s)	250, 392, 575
BseCI	ATCGAT	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	113, 206
BseGI	GGATG	2 cut(s)	388, 570
BseMI	GCAATG	2 cut(s)	237, 432
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	407, 483
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	253, 606
BshNI	GGYRCC	2 cut(s)	94, 123
BshTI	ACCGGT	1 cut(s)	97
BshVI	ATCGAT	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	709
BsmAI	GTCTC	2 cut(s)	26, 560
BsmFI	GGGAC	1 cut(s)	709
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	2 cut(s)	253, 606
Bso31I	GGTCTC	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	705
Bsp143I	GATC	2 cut(s)	215, 525
BspACI	CCGC	1 cut(s)	121
BspANI	GGCC	2 cut(s)	253, 606
BspCNI	CTCAG	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	2 cut(s)	96, 125
BspT107I	GGYRCC	2 cut(s)	94, 123
BspTNI	GGTCTC	1 cut(s)	560
BsrDI	GCAATG	2 cut(s)	237, 432
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	113, 206
BssMI	GATC	2 cut(s)	215, 525
BssT1I	CCWWGG	1 cut(s)	113
Bst2UI	CCWGG	3 cut(s)	250, 392, 575
Bst4CI	ACNGT	1 cut(s)	700
BstC8I	GCNNGC	4 cut(s)	228, 476, 724, 728
BstDEI	CTNAG	2 cut(s)	2, 269
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	388, 570
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	218, 528
BstMAI	GTCTC	2 cut(s)	26, 560
BstMBI	GATC	2 cut(s)	215, 525
BstNI	CCWGG	3 cut(s)	250, 392, 575
BstSCI	CCNGG	3 cut(s)	248, 390, 573
BstSFI	CTRYAG	1 cut(s)	479
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	407, 483
BstV2I	GAAGAC	1 cut(s)	379
Bsu15I	ATCGAT	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	253, 606
BsuTUI	ATCGAT	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	388, 570
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	4 cut(s)	228, 476, 724, 728
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	146
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	657, 768
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	3 cut(s)	132, 543, 608
CviJI	RGCY	9 cut(s)	253, 367, 403, 478, 484, 606, 722, 726, 742
CviKI_1	RGCY	9 cut(s)	253, 367, 403, 478, 484, 606, 722, 726, 742
CviQI	GTAC	2 cut(s)	657, 768
DdeI	CTNAG	2 cut(s)	2, 269
DpnI	GATC	2 cut(s)	217, 527
DpnII	GATC	2 cut(s)	215, 525
DraI	TTTAAA	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	3 cut(s)	248, 390, 573
EcoT14I	CCWWGG	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	113
FaeI	CATG	3 cut(s)	135, 546, 611
FalI	AAGNNNNNCTT	2 cut(s)	740, 772
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	3 cut(s)	131, 542, 607
FauNDI	CATATG	2 cut(s)	87, 664
FbaI	TGATCA	1 cut(s)	215
Fnu4HI	GCNGC	3 cut(s)	122, 396, 472
FokI	GGATG	2 cut(s)	395, 557
Fsp4HI	GCNGC	3 cut(s)	122, 396, 472
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	3 cut(s)	122, 396, 472
HaeIII	GGCC	2 cut(s)	253, 606
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	135, 546, 611
HinfI	GANTC	2 cut(s)	172, 499
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	27, 697
Hpy166II	GTNNAC	2 cut(s)	318, 659
Hpy188I	TCNGA	2 cut(s)	52, 270
Hpy188III	TCNNGA	2 cut(s)	417, 523
Hpy8I	GTNNAC	2 cut(s)	318, 659
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4V	TGCA	4 cut(s)	425, 471, 685, 747
HpyF3I	CTNAG	2 cut(s)	2, 269
Hsp92II	CATG	3 cut(s)	135, 546, 611
Ksp22I	TGATCA	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	215, 525
Lsp1109I	GCAGC	2 cut(s)	407, 483
MaeI	CTAG	1 cut(s)	771
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	217, 527
MboI	GATC	2 cut(s)	215, 525
MboII	GAAGA	6 cut(s)	257, 360, 379, 567, 663, 772
MhlI	GDGCHC	1 cut(s)	705
MluCI	AATT	7 cut(s)	37, 78, 160, 261, 307, 406, 763
MluI	ACGCGT	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	6 cut(s)	85, 213, 264, 472, 546, 596
MseI	TTAA	3 cut(s)	56, 278, 310
MslI	CAYNNNNRTG	2 cut(s)	100, 547
MspI	CCGG	1 cut(s)	98
MspR9I	CCNGG	3 cut(s)	250, 392, 575
Mva1269I	GAATGC	1 cut(s)	685
MvaI	CCWGG	3 cut(s)	250, 392, 575
MvnI	CGCG	1 cut(s)	329
NdeI	CATATG	2 cut(s)	87, 664
NdeII	GATC	2 cut(s)	215, 525
NlaIII	CATG	3 cut(s)	135, 546, 611
NlaIV	GGNNCC	2 cut(s)	96, 125
OliI	CACNNNNGTG	1 cut(s)	100
PctI	GAATGC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	499
PfoI	TCCNGGA	1 cut(s)	573
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	123, 397, 473
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp6I	CCWGG	3 cut(s)	248, 390, 573
PspGI	CCWGG	3 cut(s)	248, 390, 573
PspN4I	GGNNCC	2 cut(s)	96, 125
PspPI	GGNCC	1 cut(s)	252
RsaI	GTAC	2 cut(s)	658, 769
RsaNI	GTAC	2 cut(s)	657, 768
RseI	CAYNNNNRTG	2 cut(s)	100, 547
SaqAI	TTAA	3 cut(s)	56, 278, 310
SatI	GCNGC	3 cut(s)	122, 396, 472
Sau3AI	GATC	2 cut(s)	215, 525
Sau96I	GGNCC	1 cut(s)	252
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	3 cut(s)	250, 392, 575
SduI	GDGCHC	1 cut(s)	705
SfcI	CTRYAG	1 cut(s)	479
SgrAI	CRCCGGYG	1 cut(s)	97
SmiMI	CAYNNNNRTG	2 cut(s)	100, 547
Sse9I	AATT	7 cut(s)	37, 78, 160, 261, 307, 406, 763
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	248, 390, 573
StyI	CCWWGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	700
TaqI	TCGA	3 cut(s)	146, 524, 635
TasI	AATT	7 cut(s)	37, 78, 160, 261, 307, 406, 763
TatI	WGTACW	2 cut(s)	656, 767
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	3 cut(s)	56, 278, 310
Tru9I	TTAA	3 cut(s)	56, 278, 310
TscAI	CASTG	1 cut(s)	218
TseI	GCWGC	2 cut(s)	395, 471
TspDTI	ATGAA	6 cut(s)	91, 153, 276, 504, 512, 531
TspGWI	ACGGA	4 cut(s)	86, 165, 195, 537
TspRI	CASTG	1 cut(s)	218
XapI	RAATTY	3 cut(s)	37, 78, 406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.