Rmu_co8306661.1_g000001

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8306661.1
OG0001140
Physical Location & Seq
Reverse (-)
2 .. 339
338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8306661.1_g000001.1.cds

Sequence Viewer

Length: 338 bp
atggaattagctcagaccctcttcctccctctcgttctgtgtcttctctgtcttttaacacaacaaagtgcgctactggtctcagctggtcatcaccatggtcaccatggccatcaccaccatcatacacaccgatacttgttcgattggcgtccaacgaaactgtttgttttcggagactcgtactccgacacaggcaacaacatgaagtctgtgaccaaatcttggaaatatccttacggaatcaccttcccgggaaaacccaccggccgtttctccgatggccgcgtcctcactgatttccttggtagcccctctctctctccaatgatgcgctt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

112

Amino Acids

12.72

Weight (kDa)

9.34

Isoelectric Point (pI)

24.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 1 cut(s) 288
AciI CCGC 1 cut(s) 286
AcoI YGGCCR 3 cut(s) 109, 268, 283
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 225
AluBI AGCT 2 cut(s) 11, 86
AluI AGCT 2 cut(s) 11, 86
Alw26I GTCTC 2 cut(s) 85, 171
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 109, 268, 283
AspLEI GCGC 2 cut(s) 73, 336
AsuC2I CCSGG 2 cut(s) 254, 255
AsuHPI GGTGA 4 cut(s) 86, 95, 107, 238
AvaI CYCGRG 1 cut(s) 253
BalI TGGCCA 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 35
BccI CCATC 3 cut(s) 120, 129, 275
BceAI ACGGC 1 cut(s) 255
BcnI CCSGG 2 cut(s) 254, 255
BcoDI GTCTC 2 cut(s) 85, 171
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 254, 255
BmeT110I CYCGRG 1 cut(s) 253
BmrFI CCNGG 2 cut(s) 254, 255
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 35
BpuMI CCSGG 2 cut(s) 254, 255
BsaHI GRCGYC 1 cut(s) 151
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 4 cut(s) 97, 106, 253, 304
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 81
BseDI CCNNGG 4 cut(s) 97, 106, 253, 304
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 26, 96
BseNI ACTGG 1 cut(s) 81
BseX3I CGGCCG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 3 cut(s) 111, 270, 285
BsiEI CGRYCG 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 2 cut(s) 254, 267
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 85, 171
BsnI GGCC 3 cut(s) 111, 270, 285
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 253
Bsp19I CCATGG 2 cut(s) 97, 106
BspACI CCGC 1 cut(s) 286
BspANI GGCC 3 cut(s) 111, 270, 285
BspCNI CTCAG 2 cut(s) 25, 95
BspFNI CGCG 1 cut(s) 288
BspTNI GGTCTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 97, 106, 253, 304
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 3 cut(s) 97, 106, 304
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 151
BstDEI CTNAG 2 cut(s) 12, 82
BstDSI CCRYGG 2 cut(s) 97, 106
BstEII GGTNACC 1 cut(s) 101
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 73, 336
BstMAI GTCTC 2 cut(s) 85, 171
BstMCI CGRYCG 1 cut(s) 271
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 252, 253
BstUI CGCG 1 cut(s) 288
BstV2I GAAGAC 1 cut(s) 35
BstZI CGGCCG 1 cut(s) 268
BsuRI GGCC 3 cut(s) 111, 270, 285
BtgI CCRYGG 2 cut(s) 97, 106
BtsIMutI CAGTG 1 cut(s) 294
CfoI GCGC 2 cut(s) 73, 336
Cfr10I RCCGGY 1 cut(s) 266
Cfr9I CCCGGG 1 cut(s) 253
CseI GACGC 2 cut(s) 140, 277
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 98, 107, 205
CviJI RGCY 6 cut(s) 11, 86, 111, 270, 285, 312
CviKI_1 RGCY 6 cut(s) 11, 86, 111, 270, 285, 312
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 2 cut(s) 12, 82
EaeI YGGCCR 3 cut(s) 109, 268, 283
EagI CGGCCG 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 268
Eco130I CCWWGG 3 cut(s) 97, 106, 304
Eco31I GGTCTC 1 cut(s) 85
Eco52I CGGCCG 1 cut(s) 268
Eco88I CYCGRG 1 cut(s) 253
Eco91I GGTNACC 1 cut(s) 101
EcoO65I GGTNACC 1 cut(s) 101
EcoT14I CCWWGG 3 cut(s) 97, 106, 304
ErhI CCWWGG 3 cut(s) 97, 106, 304
FaeI CATG 3 cut(s) 101, 110, 208
FaiI YATR 4 cut(s) 99, 108, 126, 206
FatI CATG 3 cut(s) 97, 106, 204
Fnu4HI GCNGC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 286
GlaI GCGC 2 cut(s) 72, 335
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 111, 270, 285
HapII CCGG 2 cut(s) 254, 267
HgaI GACGC 2 cut(s) 140, 277
HhaI GCGC 2 cut(s) 73, 336
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 3 cut(s) 101, 110, 208
Hin6I GCGC 2 cut(s) 71, 334
HinP1I GCGC 2 cut(s) 71, 334
HinfI GANTC 2 cut(s) 179, 243
HpaII CCGG 2 cut(s) 254, 267
HphI GGTGA 4 cut(s) 86, 95, 107, 238
Hpy188I TCNGA 4 cut(s) 15, 176, 190, 280
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 12, 82
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 3 cut(s) 101, 110, 208
HspAI GCGC 2 cut(s) 71, 334
LpnPI CCDG 5 cut(s) 62, 72, 180, 267, 280
LweI GCATC 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 101, 214
MboII GAAGA 2 cut(s) 13, 35
MlsI TGGCCA 1 cut(s) 111
MluCI AATT 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 111
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 179, 213
MnlI CCTC 5 cut(s) 29, 35, 39, 302, 325
Mox20I TGGCCA 1 cut(s) 111
MscI TGGCCA 1 cut(s) 111
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 2 cut(s) 254, 267
MspR9I CCNGG 2 cut(s) 254, 255
MvnI CGCG 1 cut(s) 288
NciI CCSGG 2 cut(s) 254, 255
NcoI CCATGG 2 cut(s) 97, 106
NlaIII CATG 3 cut(s) 101, 110, 208
NmuCI GTSAC 2 cut(s) 101, 214
PfeI GAWTC 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PspEI GGTNACC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 286
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 254, 255
SetI ASST 3 cut(s) 13, 88, 251
SfaNI GCATC 1 cut(s) 321
SmaI CCCGGG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 1 cut(s) 5
SsiI CCGC 1 cut(s) 286
StyD4I CCNGG 2 cut(s) 252, 253
StyI CCWWGG 3 cut(s) 97, 106, 304
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 2 cut(s) 101, 214
Tsp45I GTSAC 2 cut(s) 101, 214
TspDTI ATGAA 1 cut(s) 221
TspGWI ACGGA 1 cut(s) 255
TspMI CCCGGG 1 cut(s) 253
TspRI CASTG 1 cut(s) 301
Van91I CCANNNNNTGG 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.