Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001140

Physical Location & Seq

Genomic Coordinates Forward (+)

24612925 .. 24613269

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56170

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAGCAAACCACCATCGTCTCATTCTGTCTCTTTCTTCTCTACATCTCCACTTGTCCACAAGTACTTCATTCAGCCATAACCTCCGACCACCGCCACCGCCACCGCCACCAACGCCATGACAGGAGATCTGTAAAGCTTTTTGTTTTCGGGGATTCGTATGCTGATACTGGGAACAGCGGCAAATCTGCAACTGGTTCGTGGAAGCCGCCTTATGGGATCACTTTTCCCGGAAAGCCGGCAGGCCGCTTCTCCGATGGTCGCGTGCTCACTGATTATATAGGTTCGTTCATTTTGTTTAATCCGCCCTCAGCTTTTTTCGCTAGCTACTCATTCATAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

114

Amino Acids

12.84

Weight (kDa)

9.56

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09930 AT3G09930 AT5G03610
fragaria_vesca	FvH4_6g18290 FvH4_6g18330 FvH4_7g05761 FvH4_7g05772
malus_domestica	MD02G1255500.v1.1 MD07G1066000.v1.1 MD12G1022800.v1.1 MD14G1019600.v1.1
prunus_persica	Prupe.2G080100_v2.0.a1 Prupe.2G080200_v2.0.a1 Prupe.2G080500_v2.0.a1 Prupe.2G080800_v2.0.a1 Prupe.2G081000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1
pyrus_communis	pycom02g21640 pycom07g05060 pycom12g02120 pycom14g01920
rosa_chinensis	RchiOBHm_Chr1g0332821 RchiOBHm_Chr1g0332841 RchiOBHm_Chr3g0472731 RchiOBHm_Chr3g0472801
rosa_laevigata	RLG00000024059 RLG00000029642
rosa_multiflora	Rmu_co8306661.1_g000001 Rmu_sc0000408.1_g000018 Rmu_sc0001786.1_g000003 Rmu_sc0005519.1_g000002 Rmu_sc0005608.1_g000010 Rmu_ssc0000025.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317950 Rroxscaffold_6G00408630
rosa_rugosa	Rorug01G0103200 Rorug01G0103300 Rorug03G0127600 Rorug03G0127700
rosa_samantha	Rh1AG128500 Rh1BG097900 Rh1CG122300 Rh1DG134100 Rh3AG180100 Rh3AG180600 Rh3BG206200 Rh3BG206800 Rh3CG203200 Rh3CG204000 Rh3CG221600 Rh3CG222400 Rh3DG169100 Rh3DG169500
rosa_wichuraiana	Rw0G004970 Rw1G010490 Rw3G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	264
AciI	CCGC	7 cut(s)	94, 100, 106, 180, 209, 247, 305
AclWI	GGATC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	215
AluBI	AGCT	3 cut(s)	139, 314, 327
AluI	AGCT	3 cut(s)	139, 314, 327
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	2 cut(s)	25, 35
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	244
AsuC2I	CCSGG	1 cut(s)	231
AsuNHI	GCTAGC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	270
BbvCI	CCTCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	23, 251
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	25, 35
BfaI	CTAG	1 cut(s)	324
BglII	AGATCT	1 cut(s)	128
BisI	GCNGC	3 cut(s)	181, 209, 247
BlsI	GCNGC	3 cut(s)	182, 210, 248
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	180
BmtI	GCTAGC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	310
BpuMI	CCSGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	175, 199
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	2 cut(s)	175, 199
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	231, 239
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	2 cut(s)	25, 35
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	128, 219
BspACI	CCGC	7 cut(s)	94, 100, 106, 180, 209, 247, 305
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	1 cut(s)	323
BspFNI	CGCG	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	175, 199
BssAI	RCCGGY	1 cut(s)	238
BssMI	GATC	2 cut(s)	128, 219
BstC8I	GCNNGC	4 cut(s)	240, 244, 266, 325
BstDEI	CTNAG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	2 cut(s)	131, 222
BstMAI	GTCTC	2 cut(s)	25, 35
BstMBI	GATC	2 cut(s)	128, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 320
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	264
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	4 cut(s)	240, 244, 266, 325
Cfr10I	RCCGGY	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	7 cut(s)	77, 139, 208, 238, 246, 314, 327
CviKI_1	RGCY	7 cut(s)	77, 139, 208, 238, 246, 314, 327
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	130, 221
DpnII	GATC	2 cut(s)	128, 219
EciI	GGCGGA	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	122
FaiI	YATR	7 cut(s)	80, 120, 162, 216, 279, 281, 338
FatI	CATG	1 cut(s)	118
Fnu4HI	GCNGC	3 cut(s)	181, 209, 247
Fsp4HI	GCNGC	3 cut(s)	181, 209, 247
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	3 cut(s)	181, 209, 247
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	2 cut(s)	231, 239
Hin1II	CATG	1 cut(s)	122
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	2 cut(s)	231, 239
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	88, 256
Hpy8I	GTNNAC	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 320
HpyF3I	CTNAG	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	122
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	128, 219
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	109, 156, 180, 228, 244, 252
MaeI	CTAG	1 cut(s)	324
MalI	GATC	2 cut(s)	130, 221
MboI	GATC	2 cut(s)	128, 219
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	94, 319
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	2 cut(s)	231, 239
MspR9I	CCNGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	114, 320
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	2 cut(s)	128, 219
NgoMIV	GCCGGC	1 cut(s)	238
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	1 cut(s)	122
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	182, 210, 248
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	181, 209, 247
Sau3AI	GATC	2 cut(s)	128, 219
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	270
SetI	ASST	5 cut(s)	86, 141, 286, 316, 329
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	7 cut(s)	94, 100, 106, 180, 209, 247, 305
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	229
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	3 cut(s)	183, 211, 249
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	3 cut(s)	59, 280, 325
TspRI	CASTG	1 cut(s)	277
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.