Prupe.2G080200_v2.0.a1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001140
Physical Location & Seq
Forward (+)
12244766 .. 12247372
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G080200.1

Sequence Viewer

Length: 1074 bp
ATGGAGAAGCAAACCACCATCGCCTCTTGTCTCTTCCTTTTATACATCGCCACTTTTACAGTGGCAGAAGTTCTTGAAGCCCATCATCACCTTCATCAGCACAACAGTCATGGCTCTGTGAAACTTTTCATCTTCGGGGACTCTTATGTTGATACAGGAAATATCAGAAAATCTGTGTCTCCTTCATGGAAGGAACCTTATGGGATCACTTTTCCCGGAAAGCCGGCCGGCCGGTTTTCGAATGGTCGTGTCCTCACTGATTATATAGCTTCCTTTTTGGGCATAAGATCTCCGGTGCCTTACGCATTGAGAAAATTTGTGAAGAAATCCAAACTAGAGTCTGGGATGAACTTTGCATTTGGAGGGACAGGTGTTTTCGATACATTGGTCAGTGGACCAAACTTGACCACCCAAATCGACTTTTTCGAACACCTGCTTCAACAAAAAGTCTATGTCAAAAACGACGTCGTTAACTCGTCCATTGCTCTTGTATCAATTGCGGGGAACGACTACGCTGCTCATTTTGGTAGACCAGGCCACGACACAAAGGATTTGGCAATGTTTACTAAATCTATTATTAAGCAGCTTACTGTGGATTTGAAGCGTATACATAATTTGGGAGTACAAAAAATAGCGGTTACAACAATAGAGCCCCTAGGATGCCTTCCCGGCATAACTTCCTCTCTTTCATATCAAAACTGCAATGAATTTGCCAATATGGCTTCAATGTTCCACAATCAGATTCTGCTTCAAAAGTTGGAGGAGTTGAACAAGGAGATAAAGAATTCGGCATTTGTCGACTTGGATCTCTATAATGCGTTTATATCTGCAGTGAAGCCCCAAAAACATCATCAAGGATATTCGACATTTCAGATTAACACTCTAAAGCCATGTTGTGTTGGGGTGAGCAATGAATACTCATGCGGCAGTGTGGATCAGACTGGTGCAAAGAAGTACATTGTATGCGATAACCCTGATGTTTCTTTCTTTTGGGATATGGTACACCCTTCGCAGAATGGTTGGCATGAAGTTTATGCCACTATAAAACCTTCTCTTCATCAATTGTATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

358

Amino Acids

39.79

Weight (kDa)

8.34

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 441
AatII GACGTC 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 441
AccB1I GGYRCC 1 cut(s) 295
AccI GTMKAC 3 cut(s) 529, 607, 798
AciI CCGC 3 cut(s) 500, 635, 924
AclWI GGATC 3 cut(s) 212, 813, 942
AcoI YGGCCR 2 cut(s) 225, 229
AcsI RAATTY 3 cut(s) 314, 707, 784
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 3 cut(s) 624, 956, 1002
AgsI TTSAA 6 cut(s) 77, 440, 601, 726, 752, 769
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 2 cut(s) 269, 586
AluI AGCT 2 cut(s) 269, 586
Alw26I GTCTC 2 cut(s) 35, 183
AlwI GGATC 3 cut(s) 212, 813, 942
AlwNI CAGNNNCTG 1 cut(s) 745
AoxI GGCC 3 cut(s) 225, 229, 535
ApeKI GCWGC 2 cut(s) 515, 583
ApoI RAATTY 3 cut(s) 314, 707, 784
ArsI GACNNNNNNTTYG 2 cut(s) 450, 482
Asp700I GAANNNNTTC 1 cut(s) 125
AspA2I CCTAGG 1 cut(s) 655
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 2 cut(s) 216, 669
AsuHPI GGTGA 2 cut(s) 80, 916
AsuII TTCGAA 2 cut(s) 239, 426
AvaII GGWCC 1 cut(s) 395
AvrII CCTAGG 1 cut(s) 655
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BanI GGYRCC 1 cut(s) 295
BanII GRGCYC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 502, 595
BccI CCATC 2 cut(s) 26, 90
BcgI CGANNNNNNTGC 2 cut(s) 497, 531
BciT130I CCWGG 1 cut(s) 534
BcnI CCSGG 2 cut(s) 216, 669
BcoDI GTCTC 2 cut(s) 35, 183
BfaI CTAG 2 cut(s) 335, 656
BfmI CTRYAG 1 cut(s) 828
BfuAI ACCTGC 1 cut(s) 441
BglI GCCNNNNNGGC 2 cut(s) 669, 719
BglII AGATCT 1 cut(s) 287
BisI GCNGC 3 cut(s) 516, 584, 925
BlnI CCTAGG 1 cut(s) 655
BlsI GCNGC 3 cut(s) 517, 585, 926
Bme1390I CCNGG 3 cut(s) 216, 534, 669
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 2 cut(s) 195, 297
BmrFI CCNGG 3 cut(s) 216, 534, 669
BmsI GCATC 1 cut(s) 650
Bpu14I TTCGAA 2 cut(s) 239, 426
BpuMI CCSGG 2 cut(s) 216, 669
BsaHI GRCGYC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 655
BsaWI WCCGGW 1 cut(s) 292
Bse118I RCCGGY 3 cut(s) 223, 227, 231
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 4 cut(s) 480, 564, 709, 916
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 655
BseGI GGATG 2 cut(s) 351, 665
BseMI GCAATG 4 cut(s) 480, 564, 709, 916
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 1 cut(s) 776
BseX3I CGGCCG 2 cut(s) 225, 229
BseXI GCAGC 2 cut(s) 502, 595
Bsh1285I CGRYCG 2 cut(s) 228, 232
BshFI GGCC 3 cut(s) 227, 231, 537
BshNI GGYRCC 1 cut(s) 295
BsiEI CGRYCG 2 cut(s) 228, 232
BsiSI CCGG 6 cut(s) 216, 224, 228, 232, 293, 669
BslFI GGGAC 2 cut(s) 152, 379
BsmAI GTCTC 2 cut(s) 35, 183
BsmFI GGGAC 2 cut(s) 152, 379
BsnI GGCC 3 cut(s) 227, 231, 537
Bsp119I TTCGAA 2 cut(s) 239, 426
Bsp1286I GDGCHC 1 cut(s) 654
Bsp143I GATC 4 cut(s) 204, 287, 805, 934
BspACI CCGC 3 cut(s) 500, 635, 924
BspANI GGCC 3 cut(s) 227, 231, 537
BspLI GGNNCC 2 cut(s) 195, 297
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 1 cut(s) 441
BspPI GGATC 3 cut(s) 212, 813, 942
BspT104I TTCGAA 2 cut(s) 239, 426
BspT107I GGYRCC 1 cut(s) 295
BsrDI GCAATG 4 cut(s) 480, 564, 709, 916
BsrFI RCCGGY 3 cut(s) 223, 227, 231
BsrI ACTGG 1 cut(s) 946
BssAI RCCGGY 3 cut(s) 223, 227, 231
BssECI CCNNGG 1 cut(s) 655
BssMI GATC 4 cut(s) 204, 287, 805, 934
BssNAI GTATAC 1 cut(s) 608
BssNI GRCGYC 1 cut(s) 465
BssT1I CCWWGG 1 cut(s) 655
Bst1107I GTATAC 1 cut(s) 608
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 61, 107, 592
Bst6I CTCTTC 2 cut(s) 38, 1059
BstACI GRCGYC 1 cut(s) 465
BstBI TTCGAA 2 cut(s) 239, 426
BstC8I GCNNGC 2 cut(s) 225, 229
BstF5I GGATG 2 cut(s) 351, 665
BstKTI GATC 4 cut(s) 207, 290, 808, 937
BstMAI GTCTC 2 cut(s) 35, 183
BstMBI GATC 4 cut(s) 204, 287, 805, 934
BstMCI CGRYCG 2 cut(s) 228, 232
BstMWI GCNNNNNNNGC 2 cut(s) 669, 719
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 3 cut(s) 214, 532, 667
BstSFI CTRYAG 1 cut(s) 828
BstV1I GCAGC 2 cut(s) 502, 595
BstX2I RGATCY 2 cut(s) 287, 805
BstYI RGATCY 2 cut(s) 287, 805
BstZ17I GTATAC 1 cut(s) 608
BstZI CGGCCG 2 cut(s) 225, 229
BsuRI GGCC 3 cut(s) 227, 231, 537
BtgZI GCGATG 2 cut(s) 4, 31
BtsCI GGATG 2 cut(s) 351, 665
BtsI GCAGTG 2 cut(s) 837, 934
BtsIMutI CAGTG 5 cut(s) 66, 255, 397, 837, 934
BveI ACCTGC 1 cut(s) 441
Cac8I GCNNGC 2 cut(s) 225, 229
CaiI CAGNNNCTG 1 cut(s) 745
Cfr10I RCCGGY 3 cut(s) 223, 227, 231
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 3 cut(s) 623, 955, 1001
CviAII CATG 5 cut(s) 110, 186, 891, 921, 1025
CviQI GTAC 3 cut(s) 623, 955, 1001
DpnI GATC 4 cut(s) 206, 289, 807, 936
DpnII GATC 4 cut(s) 204, 287, 805, 934
EaeI YGGCCR 2 cut(s) 225, 229
EagI CGGCCG 2 cut(s) 225, 229
Eam1104I CTCTTC 2 cut(s) 38, 1059
EarI CTCTTC 2 cut(s) 38, 1059
EclXI CGGCCG 2 cut(s) 225, 229
Eco130I CCWWGG 1 cut(s) 655
Eco24I GRGCYC 1 cut(s) 654
Eco47I GGWCC 1 cut(s) 395
Eco52I CGGCCG 2 cut(s) 225, 229
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 655
EcoT38I GRGCYC 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 655
FaeI CATG 5 cut(s) 113, 189, 894, 924, 1028
FaqI GGGAC 2 cut(s) 152, 379
FatI CATG 5 cut(s) 109, 185, 890, 920, 1024
FauI CCCGC 1 cut(s) 493
FblI GTMKAC 3 cut(s) 529, 607, 798
Fnu4HI GCNGC 3 cut(s) 516, 584, 925
FokI GGATG 2 cut(s) 358, 672
FriOI GRGCYC 1 cut(s) 654
FseI GGCCGGCC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 516, 584, 925
FspBI CTAG 2 cut(s) 335, 656
GluI GCNGC 3 cut(s) 516, 584, 925
HaeIII GGCC 3 cut(s) 227, 231, 537
HapII CCGG 6 cut(s) 216, 224, 228, 232, 293, 669
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 5 cut(s) 113, 189, 894, 924, 1028
HincII GTYRAC 2 cut(s) 472, 799
HindII GTYRAC 2 cut(s) 472, 799
HinfI GANTC 3 cut(s) 140, 338, 742
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 6 cut(s) 216, 224, 228, 232, 293, 669
HphI GGTGA 2 cut(s) 80, 916
Hpy166II GTNNAC 7 cut(s) 395, 472, 530, 564, 608, 799, 1003
Hpy188I TCNGA 4 cut(s) 167, 741, 873, 939
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 7 cut(s) 395, 472, 530, 564, 608, 799, 1003
Hpy99I CGWCG 2 cut(s) 467, 470
HpyAV CCTTC 6 cut(s) 101, 184, 192, 674, 1017, 1059
HpyCH4III ACNGT 3 cut(s) 61, 107, 592
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 4 cut(s) 356, 702, 830, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 669, 719
HpySE526I ACGT 1 cut(s) 465
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 5 cut(s) 113, 189, 894, 924, 1028
KroI GCCGGC 2 cut(s) 223, 227
KroNI GCCGGC 2 cut(s) 225, 229
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 4 cut(s) 204, 287, 805, 934
Lsp1109I GCAGC 2 cut(s) 502, 595
LweI GCATC 1 cut(s) 650
MaeI CTAG 2 cut(s) 335, 656
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 637
MalI GATC 4 cut(s) 206, 289, 807, 936
MboI GATC 4 cut(s) 204, 287, 805, 934
MboII GAAGA 4 cut(s) 25, 124, 334, 1046
MfeI CAATTG 2 cut(s) 495, 1061
MflI RGATCY 2 cut(s) 287, 805
MhlI GDGCHC 1 cut(s) 654
MluCI AATT 6 cut(s) 314, 495, 613, 707, 784, 1061
MlyI GAGTC 2 cut(s) 134, 347
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 5 cut(s) 34, 263, 356, 691, 754
MroNI GCCGGC 2 cut(s) 223, 227
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 471, 579, 876
MspI CCGG 6 cut(s) 216, 224, 228, 232, 293, 669
MspR9I CCNGG 3 cut(s) 216, 534, 669
MunI CAATTG 2 cut(s) 495, 1061
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 2 cut(s) 669, 719
NaeI GCCGGC 2 cut(s) 225, 229
NciI CCSGG 2 cut(s) 216, 669
NdeII GATC 4 cut(s) 204, 287, 805, 934
NgoMIV GCCGGC 2 cut(s) 223, 227
NlaIII CATG 5 cut(s) 113, 189, 894, 924, 1028
NlaIV GGNNCC 2 cut(s) 195, 297
NspV TTCGAA 2 cut(s) 239, 426
PaqCI CACCTGC 1 cut(s) 441
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PdiI GCCGGC 2 cut(s) 225, 229
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 742
PfoI TCCNGGA 1 cut(s) 214
PkrI GCNGC 3 cut(s) 517, 585, 926
PleI GAGTC 2 cut(s) 134, 346
PpsI GAGTC 2 cut(s) 134, 346
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspN4I GGNNCC 2 cut(s) 195, 297
PspPI GGNCC 1 cut(s) 395
PstI CTGCAG 1 cut(s) 832
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 2 cut(s) 287, 805
RigI GGCCGGCC 1 cut(s) 231
RsaI GTAC 3 cut(s) 624, 956, 1002
RsaNI GTAC 3 cut(s) 623, 955, 1001
SalI GTCGAC 1 cut(s) 797
SaqAI TTAA 3 cut(s) 471, 579, 876
SatI GCNGC 3 cut(s) 516, 584, 925
Sau3AI GATC 4 cut(s) 204, 287, 805, 934
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 2 cut(s) 134, 347
ScrFI CCNGG 3 cut(s) 216, 534, 669
SduI GDGCHC 1 cut(s) 654
SetI ASST 8 cut(s) 93, 199, 271, 373, 435, 468, 588, 1051
SfaNI GCATC 1 cut(s) 650
SfcI CTRYAG 1 cut(s) 828
SfuI TTCGAA 2 cut(s) 239, 426
SinI GGWCC 1 cut(s) 395
Sse9I AATT 6 cut(s) 314, 495, 613, 707, 784, 1061
SsiI CCGC 3 cut(s) 500, 635, 924
SspMI CTAG 2 cut(s) 335, 656
StyD4I CCNGG 3 cut(s) 214, 532, 667
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 61, 107, 592
TaiI ACGT 1 cut(s) 468
TaqI TCGA 6 cut(s) 239, 378, 417, 426, 798, 863
TasI AATT 6 cut(s) 314, 495, 613, 707, 784, 1061
TatI WGTACW 2 cut(s) 622, 954
TauI GCSGC 1 cut(s) 927
TfiI GAWTC 1 cut(s) 742
Tru1I TTAA 3 cut(s) 471, 579, 876
Tru9I TTAA 3 cut(s) 471, 579, 876
TscAI CASTG 5 cut(s) 66, 262, 397, 837, 934
TseI GCWGC 2 cut(s) 515, 583
TspDTI ATGAA 9 cut(s) 83, 118, 174, 362, 678, 720, 927, 1041, 1046
TspRI CASTG 5 cut(s) 66, 262, 397, 837, 934
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 3 cut(s) 314, 707, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XmaJI CCTAGG 1 cut(s) 655
XmiI GTMKAC 3 cut(s) 529, 607, 798
XmnI GAANNNNTTC 1 cut(s) 125
XspI CTAG 2 cut(s) 335, 656
ZraI GACGTC 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.