RchiOBHm_Chr3g0472801

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001140
Physical Location & Seq
Reverse (-)
18772757 .. 18773289
533 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43849

Sequence Viewer

Length: 393 bp
ATGCTTGTAGCTCTCAAGGTTTTCTTAGTTTCGTGCAACGAATATAATCGATCGGCTTTTCTTTTCAATTTCCTCGATTTAGTCTTCAGCAGGATATCAATGGAATTAGATGGAAGAATATTATTCCTTATTCTCTTCGTCTTTTACTGCGTCTCAGGGGAAGGAAAGGCGCCGCTAGTTGGAGCTGTTCCCCACCCCTGGCGTCCAACAAAGCTCTTTGTTTTCGGAGACTCCTACGCTGCCACCGGCAACAATGTCGCGAGCCTTGGCGTTGATTCTGACCGCTGTTGGATATCTCCTTATGGAGATACCTTTCCCGGCAAACCCACTGGCTGTTTCTCCGATGGTCGTGTCCTCACTGATTTCATTGGTACGCAAGCGTCACTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

130

Amino Acids

14.31

Weight (kDa)

5.66

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 173, 283
AcuI CTGAAG 1 cut(s) 70
AcyI GRCGYC 2 cut(s) 170, 202
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 2 cut(s) 179, 198
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 11, 185, 214
AluI AGCT 3 cut(s) 11, 185, 214
Alw26I GTCTC 2 cut(s) 157, 222
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 1 cut(s) 172
AsuC2I CCSGG 1 cut(s) 318
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 226
BccI CCATC 2 cut(s) 104, 338
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 157, 222
BfaI CTAG 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 2 cut(s) 173, 240
BlsI GCNGC 2 cut(s) 174, 241
Bme1390I CCNGG 2 cut(s) 199, 318
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 2 cut(s) 199, 318
BpiI GAAGAC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 49
BsaHI GRCGYC 2 cut(s) 170, 202
BsaJI CCNNGG 2 cut(s) 197, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 198
Bse118I RCCGGY 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 334
BseBI CCWGG 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 197, 265
BseLI CCNNNNNNNGG 2 cut(s) 179, 198
BseMII CTCAG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 226
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 53
BshNI GGYRCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 246, 318
BslI CCNNNNNNNGG 2 cut(s) 179, 198
BsmAI GTCTC 2 cut(s) 157, 222
BsmBI CGTCTC 1 cut(s) 157
Bsp143I GATC 1 cut(s) 50
Bsp68I TCGCGA 1 cut(s) 260
BspACI CCGC 2 cut(s) 173, 283
BspCNI CTCAG 1 cut(s) 167
BspDI ATCGAT 1 cut(s) 49
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 245
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 197, 265
BssMI GATC 1 cut(s) 50
BssNI GRCGYC 2 cut(s) 170, 202
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 2 cut(s) 170, 202
BstC8I GCNNGC 2 cut(s) 262, 378
BstDEI CTNAG 2 cut(s) 25, 154
BstFNI CGCG 1 cut(s) 260
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 2 cut(s) 157, 222
BstMBI GATC 1 cut(s) 50
BstMCI CGRYCG 1 cut(s) 53
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 197, 316
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 76
Bsu15I ATCGAT 1 cut(s) 49
BsuTUI ATCGAT 1 cut(s) 49
BtsIMutI CAGTG 3 cut(s) 327, 357, 383
BtuMI TCGCGA 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 262, 378
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 245
ClaI ATCGAT 1 cut(s) 49
CseI GACGC 3 cut(s) 139, 191, 369
Csp6I GTAC 1 cut(s) 372
CviJI RGCY 6 cut(s) 11, 56, 185, 214, 264, 333
CviKI_1 RGCY 6 cut(s) 11, 56, 185, 214, 264, 333
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 2 cut(s) 25, 154
DinI GGCGCC 1 cut(s) 171
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 265
Eco32I GATATC 2 cut(s) 96, 294
Eco57I CTGAAG 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 2 cut(s) 96, 294
EcoT14I CCWWGG 1 cut(s) 265
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 157
FaiI YATR 2 cut(s) 45, 303
FalI AAGNNNNNCTT 2 cut(s) 8, 40
Fnu4HI GCNGC 2 cut(s) 173, 240
Fsp4HI GCNGC 2 cut(s) 173, 240
FspBI CTAG 1 cut(s) 176
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 173, 240
HaeII RGCGCY 1 cut(s) 173
HapII CCGG 2 cut(s) 246, 318
HgaI GACGC 3 cut(s) 139, 191, 369
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 2 cut(s) 170, 202
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 2 cut(s) 230, 275
HpaII CCGG 2 cut(s) 246, 318
Hpy188I TCNGA 3 cut(s) 227, 280, 343
Hpy188III TCNNGA 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 25, 154
Hsp92I GRCGYC 2 cut(s) 170, 202
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 76, 141, 184, 211, 259, 315, 331
Lsp1109I GCAGC 1 cut(s) 226
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 1 cut(s) 381
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 3 cut(s) 76, 126, 127
MluCI AATT 2 cut(s) 67, 104
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 3 cut(s) 160, 230, 269
MnlI CCTC 2 cut(s) 83, 365
MspA1I CMGCKG 1 cut(s) 285
MspI CCGG 2 cut(s) 246, 318
MspR9I CCNGG 2 cut(s) 199, 318
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 260
NarI GGCGCC 1 cut(s) 170
NciI CCSGG 1 cut(s) 318
NdeII GATC 1 cut(s) 50
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 381
NruI TCGCGA 1 cut(s) 260
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 174, 241
Ple19I CGATCG 1 cut(s) 53
PleI GAGTC 1 cut(s) 224
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 171
PvuI CGATCG 1 cut(s) 53
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
SatI GCNGC 2 cut(s) 173, 240
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 2 cut(s) 199, 318
SetI ASST 5 cut(s) 13, 21, 187, 216, 314
SfoI GGCGCC 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 67, 104
SsiI CCGC 2 cut(s) 173, 283
SspDI GGCGCC 1 cut(s) 169
SspI AATATT 1 cut(s) 120
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 2 cut(s) 197, 316
StyI CCWWGG 1 cut(s) 265
TaqI TCGA 2 cut(s) 49, 75
TasI AATT 2 cut(s) 67, 104
TauI GCSGC 1 cut(s) 175
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 3 cut(s) 334, 364, 390
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 355
TspRI CASTG 3 cut(s) 334, 364, 390
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.