Rmu_sc0005608.1_g000010

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005608.1
OG0001140
Physical Location & Seq
Forward (+)
52104 .. 52531
428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005608.1_g000010.1.cds

Sequence Viewer

Length: 288 bp
atggaagaatattattccttattctcttcgtcttttactgcgtctcagaaggaaaggcgccgctactcgctagttggagctgttccccacccctggcgtccaacaaagctctttgttttcggagactcctacgccgccaccggcaacaatgtcgcgagccttggcgttgattctgaccgctgttggatatctccttatggagatacctttcccggcaaacccactggccgtttctccgatggtcgtgtcctcactgatttcattggtacgcaagcgtcactgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

95

Amino Acids

10.55

Weight (kDa)

7.88

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 61, 135, 178
AcoI YGGCCR 1 cut(s) 226
AcyI GRCGYC 2 cut(s) 58, 97
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 93
AjnI CCWGG 1 cut(s) 92
AluBI AGCT 2 cut(s) 80, 109
AluI AGCT 2 cut(s) 80, 109
Alw26I GTCTC 2 cut(s) 48, 117
AoxI GGCC 1 cut(s) 226
AspLEI GCGC 1 cut(s) 60
AsuC2I CCSGG 1 cut(s) 213
BanI GGYRCC 1 cut(s) 57
BccI CCATC 1 cut(s) 233
BceAI ACGGC 1 cut(s) 213
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BciT130I CCWGG 1 cut(s) 94
BcnI CCSGG 1 cut(s) 213
BcoDI GTCTC 2 cut(s) 48, 117
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 2 cut(s) 61, 135
BlsI GCNGC 2 cut(s) 62, 136
Bme1390I CCNGG 2 cut(s) 94, 213
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 94, 213
BpuMI CCSGG 1 cut(s) 213
BsaHI GRCGYC 2 cut(s) 58, 97
BsaJI CCNNGG 2 cut(s) 92, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 92, 160
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 141, 213
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 48, 117
BsmBI CGTCTC 1 cut(s) 48
BsnI GGCC 1 cut(s) 228
Bsp68I TCGCGA 1 cut(s) 155
BspACI CCGC 3 cut(s) 61, 135, 178
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 57
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 92, 160
BssNI GRCGYC 2 cut(s) 58, 97
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 31
BstACI GRCGYC 2 cut(s) 58, 97
BstC8I GCNNGC 2 cut(s) 157, 273
BstDEI CTNAG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstMAI GTCTC 2 cut(s) 48, 117
BstNI CCWGG 1 cut(s) 94
BstSCI CCNGG 2 cut(s) 92, 211
BstUI CGCG 1 cut(s) 155
BsuRI GGCC 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 222, 252, 278
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 157, 273
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 140
CseI GACGC 3 cut(s) 30, 86, 264
Csp6I GTAC 1 cut(s) 267
CviJI RGCY 4 cut(s) 80, 109, 159, 228
CviKI_1 RGCY 4 cut(s) 80, 109, 159, 228
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 45
DinI GGCGCC 1 cut(s) 59
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 160
Eco32I GATATC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 92
EcoRV GATATC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 59
EheI GGCGCC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 48
FaiI YATR 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 61, 135
Fsp4HI GCNGC 2 cut(s) 61, 135
FspBI CTAG 1 cut(s) 71
GlaI GCGC 1 cut(s) 59
GluI GCNGC 2 cut(s) 61, 135
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 141, 213
HgaI GACGC 3 cut(s) 30, 86, 264
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 2 cut(s) 58, 97
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 125, 170
HpaII CCGG 2 cut(s) 141, 213
Hpy188I TCNGA 4 cut(s) 48, 122, 175, 238
Hpy188III TCNNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 45
Hsp92I GRCGYC 2 cut(s) 58, 97
HspAI GCGC 1 cut(s) 58
KasI GGCGCC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 5 cut(s) 79, 106, 154, 210, 226
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 276
MboII GAAGA 2 cut(s) 17, 18
Mly113I GGCGCC 1 cut(s) 58
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 3 cut(s) 55, 125, 164
MnlI CCTC 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 2 cut(s) 141, 213
MspR9I CCNGG 2 cut(s) 94, 213
MvaI CCWGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 155
NarI GGCGCC 1 cut(s) 58
NciI CCSGG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 276
NruI TCGCGA 1 cut(s) 155
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 2 cut(s) 62, 136
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 92
PspGI CCWGG 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 59
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SatI GCNGC 2 cut(s) 61, 135
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 94, 213
SetI ASST 3 cut(s) 82, 111, 209
SfoI GGCGCC 1 cut(s) 59
SsiI CCGC 3 cut(s) 61, 135, 178
SspDI GGCGCC 1 cut(s) 57
SspI AATATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 92, 211
StyI CCWWGG 1 cut(s) 160
TauI GCSGC 2 cut(s) 63, 137
TfiI GAWTC 1 cut(s) 170
TscAI CASTG 3 cut(s) 229, 259, 285
TseFI GTSAC 1 cut(s) 276
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 1 cut(s) 250
TspRI CASTG 3 cut(s) 229, 259, 285
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.