Rh3DG169100

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001140
Physical Location & Seq
Forward (+)
14746249 .. 14746682
434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG169100.1

Sequence Viewer

Length: 303 bp
ATGGAATTAGATGGAAGAATATTATTCCTTATTCTCTTCGTCTTTTACTGCGTCTCAGCTCTTATAGGGGAAGGAAAGGCGCCGCTAGTTGGAGCTGTTCCCCACCCCTGGCGTCCAACAAAGCTCTTTGTTTTCGGAGACTCCTACGCTGCCACCGGCAACAATGTCGCGAGCCTTGGCGTTGATTCTGACCGCTGTTGGATATCTCCTTATGGAGATACCTTTCCCGGCAAACCCACTGGCTGTTTCTCCGATGGTCGTGTCCTCACTGATTTCATTGGTACGCAAGCGTCACTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

100

Amino Acids

10.76

Weight (kDa)

5.03

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccII CGCG 1 cut(s) 170
AciI CCGC 2 cut(s) 83, 193
AcyI GRCGYC 2 cut(s) 80, 112
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 2 cut(s) 89, 108
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 59, 95, 124
AluI AGCT 3 cut(s) 59, 95, 124
Alw26I GTCTC 2 cut(s) 58, 132
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 228
BanI GGYRCC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 136
BccI CCATC 2 cut(s) 5, 248
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 2 cut(s) 58, 132
BfaI CTAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 2 cut(s) 83, 150
BlsI GCNGC 2 cut(s) 84, 151
Bme1390I CCNGG 2 cut(s) 109, 228
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 109, 228
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 2 cut(s) 80, 112
BsaJI CCNNGG 2 cut(s) 107, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 108
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 109
BseDI CCNNGG 2 cut(s) 107, 175
BseLI CCNNNNNNNGG 2 cut(s) 89, 108
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 170
BshNI GGYRCC 1 cut(s) 79
BsiSI CCGG 2 cut(s) 156, 228
BslI CCNNNNNNNGG 2 cut(s) 89, 108
BsmAI GTCTC 2 cut(s) 58, 132
BsmBI CGTCTC 1 cut(s) 58
Bsp68I TCGCGA 1 cut(s) 170
BspACI CCGC 2 cut(s) 83, 193
BspCNI CTCAG 1 cut(s) 68
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 107, 175
BssNI GRCGYC 2 cut(s) 80, 112
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 2 cut(s) 80, 112
BstC8I GCNNGC 2 cut(s) 172, 288
BstDEI CTNAG 1 cut(s) 55
BstFNI CGCG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 58, 132
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 107, 226
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 136
BtsIMutI CAGTG 3 cut(s) 237, 267, 293
BtuMI TCGCGA 1 cut(s) 170
Cac8I GCNNGC 2 cut(s) 172, 288
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 155
CseI GACGC 3 cut(s) 40, 101, 279
Csp6I GTAC 1 cut(s) 282
CviJI RGCY 5 cut(s) 59, 95, 124, 174, 243
CviKI_1 RGCY 5 cut(s) 59, 95, 124, 174, 243
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 55
DinI GGCGCC 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 175
Eco32I GATATC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 58
FaiI YATR 2 cut(s) 65, 213
Fnu4HI GCNGC 2 cut(s) 83, 150
Fsp4HI GCNGC 2 cut(s) 83, 150
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 81
GluI GCNGC 2 cut(s) 83, 150
HaeII RGCGCY 1 cut(s) 83
HapII CCGG 2 cut(s) 156, 228
HgaI GACGC 3 cut(s) 40, 101, 279
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 2 cut(s) 80, 112
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 140, 185
HpaII CCGG 2 cut(s) 156, 228
Hpy188I TCNGA 3 cut(s) 137, 190, 253
Hpy188III TCNNGA 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 55
Hsp92I GRCGYC 2 cut(s) 80, 112
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 5 cut(s) 94, 121, 169, 225, 241
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 291
MboII GAAGA 2 cut(s) 27, 28
MluCI AATT 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 3 cut(s) 70, 140, 179
MnlI CCTC 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 2 cut(s) 156, 228
MspR9I CCNGG 2 cut(s) 109, 228
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 170
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 228
NlaIV GGNNCC 1 cut(s) 81
NmuCI GTSAC 1 cut(s) 291
NruI TCGCGA 1 cut(s) 170
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 84, 151
PleI GAGTC 1 cut(s) 134
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 81
RruI TCGCGA 1 cut(s) 170
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SatI GCNGC 2 cut(s) 83, 150
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 109, 228
SetI ASST 4 cut(s) 61, 97, 126, 224
SfoI GGCGCC 1 cut(s) 81
Sse9I AATT 1 cut(s) 5
SsiI CCGC 2 cut(s) 83, 193
SspDI GGCGCC 1 cut(s) 79
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 107, 226
StyI CCWWGG 1 cut(s) 175
TasI AATT 1 cut(s) 5
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 3 cut(s) 244, 274, 300
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 291
TspDTI ATGAA 1 cut(s) 265
TspRI CASTG 3 cut(s) 244, 274, 300
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.