Rorug01G0103200

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001140
Physical Location & Seq
Reverse (-)
17165550 .. 17167145
1596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0103200.1

Sequence Viewer

Length: 1182 bp
ATGGCTATGAGGCAACGCGTTGGTGCTACTAATACACGTCCAAGACAATCCATTCGTCCCACTTATGAGGATTTCCAGCCCCAGTTTGAATTGAAGGAAGAACCTGAAGCTCACATCATATATGTTCAACTTCCTGGTTTTTTGAAAGAGCAAGTAAGGATTACATTTGTGCACGCCCCTGGTGTGATCAGGGTCCATGGACAACGACCCCTTGGCAACAACAGATGGAGCCGTTTCAACCAAACCTTTCCTCTTCCACAAAATTGCCACGAAAGTAAAATTCATGGAAAGTTTAACAATGGCGTTCTTACCATTACATTGCCAAAGGAAGTCCCAAAAGTAGATCCTAAAGAAGCAGCGGCTGCAGCCAAGCCAATCCAAGAGACAAAGCCAAAAGCCGCTGCTGCTACTGAGGCAAAGCCACAGAAAGTCTTGGAGGACGACAAGGTTCCTTCGAAAGAGAAGGACCAGATACGTGCTCCTCCATCTCAAAAACCTGCTGCTACTGCTGCCCGAGACGAAAAACAAAAGGAAAAGATAAGTATTCCATCTAAAGACCCCCAAGTAGCTGCTCCTCCATCTCAAAAACCTGCTGTCGAGCCCAATTTACAGAAGGGTCAGGATGCCATTCACCAAACAGCTATTGCTACTGCTGCCAAAGACCCCCAAGTAGCTGCTCCAGAGCCAAAGGCACAAAGGGATGAGAAGAGGGTGATCGCGTTGAGTAGTGCTGCAAGTGAGCCCAAACCTCAAAAGGGTAGGGATGAAATTCCACCAAAAACTATGGGAGATGAAAAGGCGAAGGCGGACTACAAAAAGGAGGTTCAGGATAGATACATAAGCGAGGAAAATGAGAAGCCAGGAGAACCAAAGAATGCTGAAAATGTTGTCGACACACCTCTGAGTAAGATGACTGGTGAGAGAAGCACAGAAAAAGCTGTAATCGAAAGGTTTGCCCCAAATACTTTAGATAAGATAAAGAAGAAGAGCAAACGTTTTGGCACTGGTGTTGGGGAAGAGGTTTGCAATTCTGCAAAGCAAGGGATAAAAAATCTAGACAAGTGGGTAAATAATGAAGAAAAGCAGCTGTTAATAAATGTGGGGGCAGCAGTTCTTGTTCTTGTGGCATTTGGGGCTTACACGACCTACAACTTATGGTGCTCCGGAAAACCCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

393

Amino Acids

43.51

Weight (kDa)

9.45

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 31 - 118 2.5e-11 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 505, 598
AccI GTMKAC 1 cut(s) 891
AccII CGCG 2 cut(s) 18, 719
AccIII TCCGGA 1 cut(s) 1163
AciI CCGC 3 cut(s) 359, 399, 806
AclI AACGTT 1 cut(s) 994
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 2 cut(s) 279, 768
AcuI CTGAAG 1 cut(s) 126
AfiI CCNNNNNNNGG 1 cut(s) 755
AflIII ACRYGT 2 cut(s) 16, 35
AgsI TTSAA 5 cut(s) 89, 94, 128, 145, 238
AjiI CACGTC 1 cut(s) 38
AjnI CCWGG 3 cut(s) 133, 178, 859
AluBI AGCT 6 cut(s) 110, 569, 641, 674, 938, 1087
AluI AGCT 6 cut(s) 110, 569, 641, 674, 938, 1087
Alw21I GWGCWC 3 cut(s) 174, 481, 1163
Alw26I GTCTC 2 cut(s) 377, 510
Alw44I GTGCAC 1 cut(s) 170
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 513
Aor13HI TCCGGA 1 cut(s) 1163
ApaLI GTGCAC 1 cut(s) 170
ApoI RAATTY 2 cut(s) 279, 768
ArsI GACNNNNNNTTYG 2 cut(s) 36, 68
AspS9I GGNCC 2 cut(s) 193, 466
AsuHPI GGTGA 3 cut(s) 623, 724, 929
AsuII TTCGAA 1 cut(s) 455
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 2 cut(s) 193, 466
BaeGI GKGCMC 1 cut(s) 174
BanII GRGCYC 2 cut(s) 603, 744
BarI GAAGNNNNNNTAC 2 cut(s) 794, 826
Bbv12I GWGCWC 3 cut(s) 174, 481, 1163
BccI CCATC 4 cut(s) 219, 493, 556, 586
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 3 cut(s) 135, 180, 861
BclI TGATCA 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 377, 510
BfaI CTAG 1 cut(s) 1055
BfmI CTRYAG 1 cut(s) 363
BfuAI ACCTGC 2 cut(s) 505, 598
Bme1390I CCNGG 3 cut(s) 135, 180, 861
Bme18I GGWCC 2 cut(s) 193, 466
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 193, 466
BmiI GGNNCC 3 cut(s) 194, 230, 450
BmrFI CCNGG 3 cut(s) 135, 180, 861
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 1 cut(s) 613
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 663
Bpu14I TTCGAA 1 cut(s) 455
BsaAI YACGTR 1 cut(s) 476
BsaJI CCNNGG 3 cut(s) 178, 196, 211
BsaWI WCCGGW 1 cut(s) 1163
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse1I ACTGG 3 cut(s) 82, 919, 1009
Bse3DI GCAATG 1 cut(s) 317
BseAI TCCGGA 1 cut(s) 1163
BseBI CCWGG 3 cut(s) 135, 180, 861
BseDI CCNNGG 3 cut(s) 178, 196, 211
BseGI GGATG 3 cut(s) 628, 706, 769
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 402, 893
BseNI ACTGG 3 cut(s) 82, 919, 1009
BseRI GAGGAG 2 cut(s) 471, 564
BseSI GKGCMC 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 18, 719
BsiHKAI GWGCWC 3 cut(s) 174, 481, 1163
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 1 cut(s) 1164
BslFI GGGAC 2 cut(s) 42, 317
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 2 cut(s) 377, 510
BsmBI CGTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 42, 317
BsmI GAATGC 1 cut(s) 880
BsoBI CYCGRG 1 cut(s) 513
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 5 cut(s) 174, 481, 603, 744, 1163
Bsp13I TCCGGA 1 cut(s) 1163
Bsp143I GATC 3 cut(s) 186, 343, 714
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 3 cut(s) 359, 399, 806
BspCNI CTCAG 2 cut(s) 403, 894
BspEI TCCGGA 1 cut(s) 1163
BspFNI CGCG 2 cut(s) 18, 719
BspLI GGNNCC 3 cut(s) 194, 230, 450
BspMAI CTGCAG 1 cut(s) 367
BspMI ACCTGC 2 cut(s) 505, 598
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 980
BspT104I TTCGAA 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 3 cut(s) 82, 919, 1009
BssECI CCNNGG 3 cut(s) 178, 196, 211
BssMI GATC 3 cut(s) 186, 343, 714
BssT1I CCWWGG 2 cut(s) 196, 211
Bst2UI CCWGG 3 cut(s) 135, 180, 861
Bst6I CTCTTC 4 cut(s) 258, 701, 980, 1011
BstAPI GCANNNNNTGC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 476
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 411, 902
BstDSI CCRYGG 1 cut(s) 196
BstF5I GGATG 3 cut(s) 628, 706, 769
BstFNI CGCG 2 cut(s) 18, 719
BstKTI GATC 3 cut(s) 189, 346, 717
BstMAI GTCTC 2 cut(s) 377, 510
BstMBI GATC 3 cut(s) 186, 343, 714
BstMWI GCNNNNNNNGC 8 cut(s) 362, 365, 404, 413, 506, 509, 653, 1133
BstNI CCWGG 3 cut(s) 135, 180, 861
BstSCI CCNGG 3 cut(s) 133, 178, 859
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 174
BstUI CGCG 2 cut(s) 18, 719
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BtgI CCRYGG 1 cut(s) 196
BtrI CACGTC 1 cut(s) 38
BtsCI GGATG 3 cut(s) 628, 706, 769
BtsIMutI CAGTG 1 cut(s) 1002
BveI ACCTGC 2 cut(s) 505, 598
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 193, 466
CviAII CATG 2 cut(s) 197, 284
DdeI CTNAG 2 cut(s) 411, 902
DpnI GATC 3 cut(s) 188, 345, 716
DpnII GATC 3 cut(s) 186, 343, 714
Eam1104I CTCTTC 4 cut(s) 258, 701, 980, 1011
EarI CTCTTC 4 cut(s) 258, 701, 980, 1011
EciI GGCGGA 1 cut(s) 821
Eco130I CCWWGG 2 cut(s) 196, 211
Eco24I GRGCYC 2 cut(s) 603, 744
Eco47I GGWCC 2 cut(s) 193, 466
Eco57I CTGAAG 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 513
EcoRII CCWGG 3 cut(s) 133, 178, 859
EcoT14I CCWWGG 2 cut(s) 196, 211
EcoT38I GRGCYC 2 cut(s) 603, 744
ErhI CCWWGG 2 cut(s) 196, 211
Esp3I CGTCTC 1 cut(s) 510
FaeI CATG 2 cut(s) 200, 287
FaqI GGGAC 2 cut(s) 42, 317
FatI CATG 2 cut(s) 196, 283
FbaI TGATCA 1 cut(s) 186
FblI GTMKAC 1 cut(s) 891
FokI GGATG 3 cut(s) 635, 713, 776
FriOI GRGCYC 2 cut(s) 603, 744
FspBI CTAG 1 cut(s) 1055
GsuI CTGGAG 1 cut(s) 663
HapII CCGG 1 cut(s) 1164
Hin1II CATG 2 cut(s) 200, 287
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HpaII CCGG 1 cut(s) 1164
HphI GGTGA 3 cut(s) 623, 724, 929
Hpy166II GTNNAC 2 cut(s) 172, 892
Hpy188I TCNGA 1 cut(s) 903
Hpy188III TCNNGA 5 cut(s) 620, 680, 827, 1055, 1164
Hpy8I GTNNAC 2 cut(s) 172, 892
HpyAV CCTTC 5 cut(s) 88, 457, 462, 607, 796
HpyCH4IV ACGT 3 cut(s) 37, 475, 994
HpyCH4V TGCA 5 cut(s) 172, 365, 734, 1026, 1034
HpyF10VI GCNNNNNNNGC 8 cut(s) 362, 365, 404, 413, 506, 509, 653, 1133
HpyF3I CTNAG 2 cut(s) 411, 902
HpySE526I ACGT 3 cut(s) 37, 475, 994
Hsp92II CATG 2 cut(s) 200, 287
Kpn2I TCCGGA 1 cut(s) 1163
Ksp22I TGATCA 1 cut(s) 186
Kzo9I GATC 3 cut(s) 186, 343, 714
LguI GCTCTTC 1 cut(s) 980
LmnI GCTCC 5 cut(s) 228, 484, 577, 682, 1166
LweI GCATC 1 cut(s) 613
MaeI CTAG 1 cut(s) 1055
MaeII ACGT 3 cut(s) 37, 475, 994
MalI GATC 3 cut(s) 188, 345, 716
MboI GATC 3 cut(s) 186, 343, 714
MboII GAAGA 7 cut(s) 110, 245, 718, 994, 997, 1028, 1088
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 5 cut(s) 174, 481, 603, 744, 1163
MluCI AATT 6 cut(s) 89, 262, 279, 604, 768, 1027
MluI ACGCGT 1 cut(s) 16
MroI TCCGGA 1 cut(s) 1163
MseI TTAA 2 cut(s) 294, 1091
MspA1I CMGCKG 3 cut(s) 359, 401, 1087
MspI CCGG 1 cut(s) 1164
MspR9I CCNGG 3 cut(s) 135, 180, 861
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 3 cut(s) 135, 180, 861
MvnI CGCG 2 cut(s) 18, 719
MwoI GCNNNNNNNGC 8 cut(s) 362, 365, 404, 413, 506, 509, 653, 1133
NcoI CCATGG 1 cut(s) 196
NdeII GATC 3 cut(s) 186, 343, 714
NlaIII CATG 2 cut(s) 200, 287
NlaIV GGNNCC 3 cut(s) 194, 230, 450
NspV TTCGAA 1 cut(s) 455
PciSI GCTCTTC 1 cut(s) 980
PctI GAATGC 1 cut(s) 880
Ppu21I YACGTR 1 cut(s) 476
Psp1406I AACGTT 1 cut(s) 994
Psp6I CCWGG 3 cut(s) 133, 178, 859
PspGI CCWGG 3 cut(s) 133, 178, 859
PspN4I GGNNCC 3 cut(s) 194, 230, 450
PspPI GGNCC 2 cut(s) 193, 466
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 362
PsuI RGATCY 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 1087
SalI GTCGAC 1 cut(s) 890
SapI GCTCTTC 1 cut(s) 980
SaqAI TTAA 2 cut(s) 294, 1091
Sau3AI GATC 3 cut(s) 186, 343, 714
Sau96I GGNCC 2 cut(s) 193, 466
ScrFI CCNGG 3 cut(s) 135, 180, 861
SduI GDGCHC 5 cut(s) 174, 481, 603, 744, 1163
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 2 cut(s) 193, 466
Sse9I AATT 6 cut(s) 89, 262, 279, 604, 768, 1027
SsiI CCGC 3 cut(s) 359, 399, 806
SspMI CTAG 1 cut(s) 1055
StyD4I CCNGG 3 cut(s) 133, 178, 859
StyI CCWWGG 2 cut(s) 196, 211
TaiI ACGT 3 cut(s) 40, 478, 997
TaqI TCGA 4 cut(s) 455, 597, 891, 945
TasI AATT 6 cut(s) 89, 262, 279, 604, 768, 1027
TauI GCSGC 2 cut(s) 362, 401
Tru1I TTAA 2 cut(s) 294, 1091
Tru9I TTAA 2 cut(s) 294, 1091
TscAI CASTG 1 cut(s) 1009
TspDTI ATGAA 4 cut(s) 272, 780, 807, 1089
TspRI CASTG 1 cut(s) 1009
VneI GTGCAC 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 193, 466
XapI RAATTY 2 cut(s) 279, 768
XbaI TCTAGA 1 cut(s) 1054
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.