Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001140

Physical Location & Seq

Genomic Coordinates Reverse (-)

2294998 .. 2300043

Gene Structure 5046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1022800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGAAATCACCTCCAACCCTCTTCCTCCTCCCCACTCTCTTTCTCTTTTACCTCCTCTCAGGACAAAAAGGGGTGCTAGTTTCAGCTGCTCACCACCACCACCACCACCACCACCACCACACACATCGCCACCTATTTAATTGGCGGCCGACAAAGCTATTTGTTTTTGGAGACTCGTATGCTGACACAGGAAACAACAGAAAATCAGTGGCTACTTCTTGGAAACAACCCTATGGAATCACATTCCCGGGAAAACCCAGTGGCCGTTTCTCCGATGGCCGCGTCCTCACCGATTTCCTTGCTAGGTTTATAGGAGTGAAGTCTCCAATACCATACAGATTTAGAAAAGTCGGGATCAATCATTTGAAGTACGGAGTTAATTTCGCATATGGAGGCACAGGTGTTTTTAAAACCTTGGTTTTGGATCCCAACATGACAACCCAGATTGACTTCTTTCAGAAGCTCATAGAAAACGGCTCCATCTTCACTCCCAAAGATCTTCACTCCTCCGTCGCCCTCGTCACCGGTCCCGGCAACGACTACGGGACTTATATCGCGACAAATGGCTCTGTTCAGGGTTGGCAACCCTTCATCACATCAGTCGTGAATCAACTAAGTGTGAACTTGAAACGTATTTATGCCTTGGGAGTGAGCAAAGTAGTTGTGACAGCTCTTCAACCTTTGGGATGTCTCCCTTCGAGGACGGCATCATTTTCATTCCAACAATGCAATGTAACTGAGAACGCGCTAGTCGTTTTCCACAACCTTCTGTTGCAGCAAGCTGTGGCCAAGTTGAACAAAGAAACCAAGAATTCTTTTATCATTGTTGATCTTTATGCCTCGTTCATGTCGGTGTTCAAGAACAAAGGAGATCTAGGAAGCATAAAGTTTGATAACCCATTGAGGCCATGCTGCATTGGTATAAGCAGTGGGCGTTTTTGTGGGAGTGTGGATGAAAGTGGTGCAAAGAAGTATACCATTTGTAAAAACCCGGAATCCGCATTCTTTTGGGACACTGCTCACCCTACCCAACAGGGTTGGCGTGCTGTGTATTCAGCTTTGCAAGCCACACTTGAACAACTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

363

Amino Acids

40.31

Weight (kDa)

9.65

Isoelectric Point (pI)

24.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	53 - 353	2.2e-28	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09930 AT3G09930 AT5G03610
fragaria_vesca	FvH4_6g18290 FvH4_6g18330 FvH4_7g05761 FvH4_7g05772
malus_domestica	MD02G1255500.v1.1 MD07G1066000.v1.1 MD12G1022800.v1.1 MD14G1019600.v1.1
prunus_persica	Prupe.2G080100_v2.0.a1 Prupe.2G080200_v2.0.a1 Prupe.2G080500_v2.0.a1 Prupe.2G080800_v2.0.a1 Prupe.2G081000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1
pyrus_communis	pycom02g21640 pycom07g05060 pycom12g02120 pycom14g01920
rosa_chinensis	RchiOBHm_Chr1g0332821 RchiOBHm_Chr1g0332841 RchiOBHm_Chr3g0472731 RchiOBHm_Chr3g0472801
rosa_laevigata	RLG00000024059 RLG00000029642
rosa_multiflora	Rmu_co8306661.1_g000001 Rmu_sc0000408.1_g000018 Rmu_sc0001786.1_g000003 Rmu_sc0005519.1_g000002 Rmu_sc0005608.1_g000010 Rmu_ssc0000025.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317950 Rroxscaffold_6G00408630
rosa_rugosa	Rorug01G0103200 Rorug01G0103300 Rorug03G0127600 Rorug03G0127700
rosa_samantha	Rh1AG128500 Rh1BG097900 Rh1CG122300 Rh1DG134100 Rh3AG180100 Rh3AG180600 Rh3BG206200 Rh3BG206800 Rh3CG203200 Rh3CG204000 Rh3CG221600 Rh3CG222400 Rh3DG169100 Rh3DG169500
rosa_wichuraiana	Rw0G004970 Rw1G010490 Rw3G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	974
AccII	CGCG	3 cut(s)	282, 557, 746
AciI	CCGC	3 cut(s)	145, 280, 999
AclWI	GGATC	3 cut(s)	362, 419, 432
AcoI	YGGCCR	4 cut(s)	146, 262, 277, 786
AcsI	RAATTY	1 cut(s)	811
AfaI	GTAC	1 cut(s)	371
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	6 cut(s)	367, 628, 677, 796, 859, 1076
AluBI	AGCT	6 cut(s)	86, 157, 463, 671, 782, 1058
AluI	AGCT	6 cut(s)	86, 157, 463, 671, 782, 1058
Alw26I	GTCTC	3 cut(s)	165, 327, 695
AlwI	GGATC	3 cut(s)	362, 419, 432
Ama87I	CYCGRG	1 cut(s)	247
AoxI	GGCC	5 cut(s)	146, 262, 277, 786, 905
ApeKI	GCWGC	3 cut(s)	86, 775, 912
ApoI	RAATTY	1 cut(s)	811
AsiGI	ACCGGT	1 cut(s)	524
AspLEI	GCGC	1 cut(s)	748
AspS9I	GGNCC	1 cut(s)	527
AsuC2I	CCSGG	4 cut(s)	248, 249, 531, 992
AsuHPI	GGTGA	4 cut(s)	83, 280, 514, 1013
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	527
BalI	TGGCCA	1 cut(s)	788
BamHI	GGATCC	1 cut(s)	424
BbvI	GCAGC	3 cut(s)	73, 787, 899
BccI	CCATC	2 cut(s)	269, 488
BceAI	ACGGC	3 cut(s)	249, 490, 720
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcnI	CCSGG	4 cut(s)	248, 249, 531, 992
BcoDI	GTCTC	3 cut(s)	165, 327, 695
BfaI	CTAG	4 cut(s)	77, 303, 749, 875
BglII	AGATCT	2 cut(s)	496, 871
BisI	GCNGC	5 cut(s)	87, 146, 280, 776, 913
BlsI	GCNGC	5 cut(s)	88, 147, 281, 777, 914
Bme1390I	CCNGG	4 cut(s)	248, 249, 531, 992
Bme18I	GGWCC	1 cut(s)	527
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	527
BmiI	GGNNCC	3 cut(s)	426, 478, 529
BmrFI	CCNGG	4 cut(s)	248, 249, 531, 992
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	252
BpuMI	CCSGG	4 cut(s)	248, 249, 531, 992
BsaJI	CCNNGG	3 cut(s)	247, 414, 642
BsaWI	WCCGGW	1 cut(s)	524
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	258
Bse3DI	GCAATG	1 cut(s)	736
BseDI	CCNNGG	3 cut(s)	247, 414, 642
BseGI	GGATG	2 cut(s)	692, 958
BseMI	GCAATG	1 cut(s)	736
BseMII	CTCAG	2 cut(s)	72, 729
BseNI	ACTGG	1 cut(s)	258
BseRI	GAGGAG	3 cut(s)	17, 44, 496
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	3 cut(s)	73, 787, 899
Bsh1236I	CGCG	3 cut(s)	282, 557, 746
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	5 cut(s)	148, 264, 279, 788, 907
BshTI	ACCGGT	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	149
BsiHKCI	CYCGRG	1 cut(s)	247
BsiSI	CCGG	4 cut(s)	248, 525, 531, 992
BslFI	GGGAC	3 cut(s)	513, 559, 1025
BsmAI	GTCTC	3 cut(s)	165, 327, 695
BsmFI	GGGAC	3 cut(s)	513, 559, 1025
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	5 cut(s)	148, 264, 279, 788, 907
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	5 cut(s)	354, 424, 496, 829, 871
Bsp68I	TCGCGA	1 cut(s)	557
BspACI	CCGC	3 cut(s)	145, 280, 999
BspANI	GGCC	5 cut(s)	148, 264, 279, 788, 907
BspCNI	CTCAG	2 cut(s)	71, 730
BspFNI	CGCG	3 cut(s)	282, 557, 746
BspLI	GGNNCC	3 cut(s)	426, 478, 529
BspPI	GGATC	3 cut(s)	362, 419, 432
BspQI	GCTCTTC	1 cut(s)	678
BsrDI	GCAATG	1 cut(s)	736
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	258
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	247, 414, 642
BssMI	GATC	5 cut(s)	354, 424, 496, 829, 871
BssNAI	GTATAC	1 cut(s)	975
BssT1I	CCWWGG	2 cut(s)	414, 642
Bst1107I	GTATAC	1 cut(s)	975
Bst6I	CTCTTC	2 cut(s)	26, 678
BstC8I	GCNNGC	3 cut(s)	780, 1044, 1065
BstDEI	CTNAG	3 cut(s)	58, 614, 738
BstF5I	GGATG	2 cut(s)	692, 958
BstFNI	CGCG	3 cut(s)	282, 557, 746
BstHHI	GCGC	1 cut(s)	748
BstKTI	GATC	5 cut(s)	357, 427, 499, 832, 874
BstMAI	GTCTC	3 cut(s)	165, 327, 695
BstMBI	GATC	5 cut(s)	354, 424, 496, 829, 871
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 1064
BstSCI	CCNGG	4 cut(s)	246, 247, 529, 990
BstUI	CGCG	3 cut(s)	282, 557, 746
BstV1I	GCAGC	3 cut(s)	73, 787, 899
BstX2I	RGATCY	3 cut(s)	424, 496, 871
BstYI	RGATCY	3 cut(s)	424, 496, 871
BstZ17I	GTATAC	1 cut(s)	975
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	5 cut(s)	148, 264, 279, 788, 907
BtgZI	GCGATG	1 cut(s)	110
BtsCI	GGATG	2 cut(s)	692, 958
BtsI	GCAGTG	2 cut(s)	934, 1014
BtsIMutI	CAGTG	4 cut(s)	213, 265, 934, 1014
BtuMI	TCGCGA	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	780, 1044, 1065
CfoI	GCGC	1 cut(s)	748
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	527
Cfr9I	CCCGGG	1 cut(s)	247
CseI	GACGC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	370
CspAI	ACCGGT	1 cut(s)	524
CviAII	CATG	3 cut(s)	433, 847, 909
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	58, 614, 738
DpnI	GATC	5 cut(s)	356, 426, 498, 831, 873
DpnII	GATC	5 cut(s)	354, 424, 496, 829, 871
DraI	TTTAAA	1 cut(s)	409
EaeI	YGGCCR	4 cut(s)	146, 262, 277, 786
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	26, 678
EarI	CTCTTC	2 cut(s)	26, 678
EclXI	CGGCCG	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	414, 642
Eco47I	GGWCC	1 cut(s)	527
Eco52I	CGGCCG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	811
EcoT14I	CCWWGG	2 cut(s)	414, 642
ErhI	CCWWGG	2 cut(s)	414, 642
FaeI	CATG	3 cut(s)	436, 850, 912
FalI	AAGNNNNNCTT	2 cut(s)	1056, 1088
FaqI	GGGAC	3 cut(s)	513, 559, 1025
FatI	CATG	3 cut(s)	432, 846, 908
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	974
Fnu4HI	GCNGC	5 cut(s)	87, 146, 280, 776, 913
FokI	GGATG	2 cut(s)	699, 965
Fsp4HI	GCNGC	5 cut(s)	87, 146, 280, 776, 913
FspBI	CTAG	4 cut(s)	77, 303, 749, 875
GlaI	GCGC	1 cut(s)	747
GluI	GCNGC	5 cut(s)	87, 146, 280, 776, 913
HaeIII	GGCC	5 cut(s)	148, 264, 279, 788, 907
HapII	CCGG	4 cut(s)	248, 525, 531, 992
HgaI	GACGC	1 cut(s)	271
HhaI	GCGC	1 cut(s)	748
Hin1II	CATG	3 cut(s)	436, 850, 912
Hin6I	GCGC	1 cut(s)	746
HinP1I	GCGC	1 cut(s)	746
HinfI	GANTC	4 cut(s)	173, 237, 607, 995
HpaII	CCGG	4 cut(s)	248, 525, 531, 992
HphI	GGTGA	4 cut(s)	83, 280, 514, 1013
Hpy166II	GTNNAC	2 cut(s)	622, 975
Hpy188I	TCNGA	2 cut(s)	274, 459
Hpy188III	TCNNGA	5 cut(s)	60, 352, 556, 604, 859
Hpy8I	GTNNAC	2 cut(s)	622, 975
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	3 cut(s)	598, 705, 776
HpyCH4IV	ACGT	1 cut(s)	631
HpyCH4V	TGCA	5 cut(s)	729, 775, 915, 965, 1063
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 1064
HpyF3I	CTNAG	3 cut(s)	58, 614, 738
HpySE526I	ACGT	1 cut(s)	631
Hsp92II	CATG	3 cut(s)	436, 850, 912
HspAI	GCGC	1 cut(s)	746
Kzo9I	GATC	5 cut(s)	354, 424, 496, 829, 871
LguI	GCTCTTC	1 cut(s)	678
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	3 cut(s)	73, 787, 899
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	4 cut(s)	77, 303, 749, 875
MaeII	ACGT	1 cut(s)	631
MaeIII	GTNAC	3 cut(s)	520, 664, 733
MalI	GATC	5 cut(s)	356, 426, 498, 831, 873
MboI	GATC	5 cut(s)	354, 424, 496, 829, 871
MboII	GAAGA	4 cut(s)	13, 475, 491, 665
MflI	RGATCY	3 cut(s)	424, 496, 871
MlsI	TGGCCA	1 cut(s)	788
MluCI	AATT	3 cut(s)	139, 379, 811
MluNI	TGGCCA	1 cut(s)	788
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	38, 745
Mox20I	TGGCCA	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	788
MseI	TTAA	4 cut(s)	138, 378, 408, 1087
MslI	CAYNNNNRTG	1 cut(s)	851
Msp20I	TGGCCA	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	4 cut(s)	248, 525, 531, 992
MspR9I	CCNGG	4 cut(s)	248, 249, 531, 992
Mva1269I	GAATGC	1 cut(s)	1001
MvnI	CGCG	3 cut(s)	282, 557, 746
MwoI	GCNNNNNNNGC	2 cut(s)	154, 1064
NciI	CCSGG	4 cut(s)	248, 249, 531, 992
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	5 cut(s)	354, 424, 496, 829, 871
NlaIII	CATG	3 cut(s)	436, 850, 912
NlaIV	GGNNCC	3 cut(s)	426, 478, 529
NmuCI	GTSAC	2 cut(s)	520, 664
NruI	TCGCGA	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	678
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PctI	GAATGC	1 cut(s)	1001
PfeI	GAWTC	3 cut(s)	237, 607, 995
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	5 cut(s)	88, 147, 281, 777, 914
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PspN4I	GGNNCC	3 cut(s)	426, 478, 529
PspPI	GGNCC	1 cut(s)	527
PsuI	RGATCY	3 cut(s)	424, 496, 871
PvuII	CAGCTG	1 cut(s)	86
RruI	TCGCGA	1 cut(s)	557
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	1 cut(s)	851
SapI	GCTCTTC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	138, 378, 408, 1087
SatI	GCNGC	5 cut(s)	87, 146, 280, 776, 913
Sau3AI	GATC	5 cut(s)	354, 424, 496, 829, 871
Sau96I	GGNCC	1 cut(s)	527
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	4 cut(s)	248, 249, 531, 992
SfaNI	GCATC	1 cut(s)	716
SinI	GGWCC	1 cut(s)	527
SmaI	CCCGGG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	851
Sse9I	AATT	3 cut(s)	139, 379, 811
SsiI	CCGC	3 cut(s)	145, 280, 999
SspMI	CTAG	4 cut(s)	77, 303, 749, 875
StyD4I	CCNGG	4 cut(s)	246, 247, 529, 990
StyI	CCWWGG	2 cut(s)	414, 642
TaiI	ACGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	698
TasI	AATT	3 cut(s)	139, 379, 811
TauI	GCSGC	2 cut(s)	148, 282
TfiI	GAWTC	3 cut(s)	237, 607, 995
Tru1I	TTAA	4 cut(s)	138, 378, 408, 1087
Tru9I	TTAA	4 cut(s)	138, 378, 408, 1087
TscAI	CASTG	4 cut(s)	213, 265, 934, 1021
TseFI	GTSAC	2 cut(s)	520, 664
TseI	GCWGC	3 cut(s)	86, 775, 912
Tsp45I	GTSAC	2 cut(s)	520, 664
TspDTI	ATGAA	5 cut(s)	17, 580, 705, 835, 969
TspGWI	ACGGA	2 cut(s)	387, 499
TspMI	CCCGGG	1 cut(s)	247
TspRI	CASTG	4 cut(s)	213, 265, 934, 1021
VpaK11BI	GGWCC	1 cut(s)	527
XapI	RAATTY	1 cut(s)	811
XmaI	CCCGGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	974
XspI	CTAG	4 cut(s)	77, 303, 749, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.