Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005519.1

Orthogroup ID

OG0001140

Physical Location & Seq

Genomic Coordinates Forward (+)

7695 .. 8033

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005519.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atggagcaaaccaccatcgtctcattctgtctctttcttctctacatctccacttgtccacaagtacttcattcagccataacctccgaccaccgccaccgccaccaacgccatgacaggagatctgtaaagctttttgttttcggggattcgtatgctgatactggaaacagcggcaaatctgcaactggttcgtggaagccgccttatgggatcacttttcccggaaagccggcaggccgcttctccgatggtcgcgtgctcactgattatataggttcgttcattttgtttaatccgccctcagcttttttcgctagctactcattcataaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

112

Amino Acids

12.54

Weight (kDa)

9.34

Isoelectric Point (pI)

34.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09930 AT3G09930 AT5G03610
fragaria_vesca	FvH4_6g18290 FvH4_6g18330 FvH4_7g05761 FvH4_7g05772
malus_domestica	MD02G1255500.v1.1 MD07G1066000.v1.1 MD12G1022800.v1.1 MD14G1019600.v1.1
prunus_persica	Prupe.2G080100_v2.0.a1 Prupe.2G080200_v2.0.a1 Prupe.2G080500_v2.0.a1 Prupe.2G080800_v2.0.a1 Prupe.2G081000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1 Prupe.7G114000_v2.0.a1
pyrus_communis	pycom02g21640 pycom07g05060 pycom12g02120 pycom14g01920
rosa_chinensis	RchiOBHm_Chr1g0332821 RchiOBHm_Chr1g0332841 RchiOBHm_Chr3g0472731 RchiOBHm_Chr3g0472801
rosa_laevigata	RLG00000024059 RLG00000029642
rosa_multiflora	Rmu_co8306661.1_g000001 Rmu_sc0000408.1_g000018 Rmu_sc0001786.1_g000003 Rmu_sc0005519.1_g000002 Rmu_sc0005608.1_g000010 Rmu_ssc0000025.1_g000001
rosa_roxburghii	Rroxscaffold_4G00317950 Rroxscaffold_6G00408630
rosa_rugosa	Rorug01G0103200 Rorug01G0103300 Rorug03G0127600 Rorug03G0127700
rosa_samantha	Rh1AG128500 Rh1BG097900 Rh1CG122300 Rh1DG134100 Rh3AG180100 Rh3AG180600 Rh3BG206200 Rh3BG206800 Rh3CG203200 Rh3CG204000 Rh3CG221600 Rh3CG222400 Rh3DG169100 Rh3DG169500
rosa_wichuraiana	Rw0G004970 Rw1G010490 Rw3G016240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	6 cut(s)	94, 100, 174, 203, 241, 299
AclWI	GGATC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	209
AluBI	AGCT	3 cut(s)	133, 308, 321
AluI	AGCT	3 cut(s)	133, 308, 321
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	2 cut(s)	25, 35
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	225
AsuNHI	GCTAGC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	304
BccI	CCATC	2 cut(s)	23, 245
BcgI	CGANNNNNNTGC	2 cut(s)	174, 208
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	2 cut(s)	25, 35
BfaI	CTAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	3 cut(s)	175, 203, 241
BlsI	GCNGC	3 cut(s)	176, 204, 242
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmtI	GCTAGC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	304
BpuMI	CCSGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	169, 193
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	169, 193
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	225, 233
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	25, 35
BsmBI	CGTCTC	1 cut(s)	25
BsnI	GGCC	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	122, 213
BspACI	CCGC	6 cut(s)	94, 100, 174, 203, 241, 299
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	258
BspOI	GCTAGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	169, 193
BssAI	RCCGGY	1 cut(s)	232
BssMI	GATC	2 cut(s)	122, 213
BstC8I	GCNNGC	4 cut(s)	234, 238, 260, 319
BstDEI	CTNAG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	258
BstKTI	GATC	2 cut(s)	125, 216
BstMAI	GTCTC	2 cut(s)	25, 35
BstMBI	GATC	2 cut(s)	122, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 314
BstSCI	CCNGG	1 cut(s)	223
BstUI	CGCG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	4 cut(s)	234, 238, 260, 319
Cfr10I	RCCGGY	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	65
CviAII	CATG	1 cut(s)	113
CviJI	RGCY	7 cut(s)	77, 133, 202, 232, 240, 308, 321
CviKI_1	RGCY	7 cut(s)	77, 133, 202, 232, 240, 308, 321
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	124, 215
DpnII	GATC	2 cut(s)	122, 213
EciI	GGCGGA	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	116
FaiI	YATR	7 cut(s)	80, 114, 156, 210, 273, 275, 332
FatI	CATG	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	175, 203, 241
Fsp4HI	GCNGC	3 cut(s)	175, 203, 241
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	3 cut(s)	175, 203, 241
HaeIII	GGCC	1 cut(s)	240
HapII	CCGG	2 cut(s)	225, 233
Hin1II	CATG	1 cut(s)	116
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	2 cut(s)	225, 233
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	88, 250
Hpy8I	GTNNAC	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 314
HpyF3I	CTNAG	1 cut(s)	304
Hsp92II	CATG	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	122, 213
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	103, 150, 174, 222, 238, 246
MaeI	CTAG	1 cut(s)	318
MalI	GATC	2 cut(s)	124, 215
MboI	GATC	2 cut(s)	122, 213
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	2 cut(s)	94, 313
MroNI	GCCGGC	1 cut(s)	232
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	174
MspI	CCGG	2 cut(s)	225, 233
MspR9I	CCNGG	1 cut(s)	225
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	108, 314
NaeI	GCCGGC	1 cut(s)	234
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	2 cut(s)	122, 213
NgoMIV	GCCGGC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	317
NlaIII	CATG	1 cut(s)	116
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	176, 204, 242
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	175, 203, 241
Sau3AI	GATC	2 cut(s)	122, 213
ScaI	AGTACT	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	225
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	5 cut(s)	86, 135, 280, 310, 323
Sse9I	AATT	1 cut(s)	334
SsiI	CCGC	6 cut(s)	94, 100, 174, 203, 241, 299
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	223
TasI	AATT	1 cut(s)	334
TatI	WGTACW	1 cut(s)	64
TauI	GCSGC	3 cut(s)	177, 205, 243
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	1 cut(s)	271
TspDTI	ATGAA	3 cut(s)	59, 274, 319
TspRI	CASTG	1 cut(s)	271
XspI	CTAG	1 cut(s)	318
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.