Rh1BG097900

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001140
Physical Location & Seq
Forward (+)
17157991 .. 17162071
4081 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG097900.1

Sequence Viewer

Length: 1092 bp
ATGGAGCAAACCACCATCGTCTCATGCTGTCTCTTTCTTCTCTACATCTCCACTTGTCCACAAGTACTTCATTCAGCCATAACCTCCGACCACCGCCACCGCCACCAACGCCATGACAGGAGATCTGTAAAGCTTTTTGTTTTCGGGGATTCGTATGCTGATACTGGGAACAGCGGCAAATCTGCAACTGGTTCGTGGAAGCCGCCTTATGGGATCACTTTTCCCGGAAAGCCGGCAGGCCGCTTCTCCGATGGTCGCGTGCTCACTGATTATATAGCTTCCTTTTTGGGTATAAGATCTCTAGTACCTTACGAATTGAGAAACACCGAAGAGAAATCGAAACTAAGGAACGGGGTGAACTTTGCATATGGAGGAACTGGTGTTTTTGAGACTTTGGTGAGTGCACCAAACATGACTACCCAAATCGACTTTCTCCAACAACTAGTCGAAGAAAAATTGTATACCAAAAGTGACTTGGACTCGTCCGTTGCTTTAGTATCACTAGGTGGAAACGACTATGCTGCTTATTTTCTTAAAGGAAACCAGAGTCAGGATTTTTCAGCGGTGTCCACATCGATTGTCAACCAGCTTGTGGTGAACATAAAGCGTATAAATGATTTGGGAGTGCGAAAATTATTGGTTACAGCAATAGAGCCCATGGGATGTTTGCCAGCCGTAACTTCCATTTTTTCTTCGTATCAGAATTGCAGTGAAAGTATGAATGCAGGTTCAAGATTCCACAACCAGATTTTGCACCAAAAGGTTGAAGATTTAAAGAATCAGACAACTACGAGATCAACATTTGTAATCTTGGATCTCTATAATGCATTTCTGTCTGCAATCCAACAACAAAAACACCTGCAACAAGGAAATTCGACAAGATCAGAGAATCCACTGATGCCATGCTGTGTTGGGGTGAGCAGCGAATACTCGTGTGGGAGTGTGGACGAGAAAAGTGGAGCAAACAAGTACACAGTGTGCAGTAATCCGGAAAGGTCTTTCTTTTGGGACATGGAGCACCTTTCGCAGATGGCTGGCATGCTGTTTATTCTGCAATCAAGTCTTCTCTTCGTCCATTGCGTTAATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

363

Amino Acids

40.33

Weight (kDa)

8.0

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 344 3.4e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 867
Acc36I ACCTGC 2 cut(s) 716, 867
AccB7I CCANNNNNTGG 1 cut(s) 592
AccI GTMKAC 1 cut(s) 461
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 988
AciI CCGC 6 cut(s) 94, 100, 174, 203, 241, 563
AclWI GGATC 2 cut(s) 221, 822
AcsI RAATTY 1 cut(s) 871
AdeI CACNNNGTG 2 cut(s) 506, 978
AfaI GTAC 3 cut(s) 66, 306, 971
AfiI CCNNNNNNNGG 3 cut(s) 209, 550, 592
AgsI TTSAA 2 cut(s) 732, 767
AhlI ACTAGT 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 3 cut(s) 133, 278, 589
AluI AGCT 3 cut(s) 133, 278, 589
Alw21I GWGCWC 3 cut(s) 264, 406, 1020
Alw26I GTCTC 3 cut(s) 25, 35, 383
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 2 cut(s) 221, 822
Aor13HI TCCGGA 1 cut(s) 988
AoxI GGCC 1 cut(s) 238
ApaLI GTGCAC 1 cut(s) 402
ApeKI GCWGC 2 cut(s) 521, 921
ApoI RAATTY 1 cut(s) 871
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 4 cut(s) 367, 409, 607, 928
BaeGI GKGCMC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 657
BauI CACGAG 1 cut(s) 931
BbsI GAAGAC 1 cut(s) 1055
Bbv12I GWGCWC 3 cut(s) 264, 406, 1020
BbvI GCAGC 2 cut(s) 508, 933
BccI CCATC 3 cut(s) 23, 245, 1024
BceAI ACGGC 1 cut(s) 659
BcgI CGANNNNNNTGC 4 cut(s) 174, 208, 503, 537
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 3 cut(s) 25, 35, 383
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 3 cut(s) 302, 443, 503
BfuAI ACCTGC 2 cut(s) 716, 867
BglII AGATCT 2 cut(s) 122, 296
BisI GCNGC 5 cut(s) 175, 203, 241, 522, 922
BlsI GCNGC 5 cut(s) 176, 204, 242, 523, 923
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 888
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 1055
BpuMI CCSGG 1 cut(s) 225
Bsa29I ATCGAT 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 657
BsaWI WCCGGW 1 cut(s) 988
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 550, 592
Bse118I RCCGGY 1 cut(s) 232
Bse1I ACTGG 3 cut(s) 169, 193, 382
Bse3DI GCAATG 1 cut(s) 1075
BseAI TCCGGA 1 cut(s) 988
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 1 cut(s) 657
BseGI GGATG 1 cut(s) 668
BseLI CCNNNNNNNGG 3 cut(s) 209, 550, 592
BseMI GCAATG 1 cut(s) 1075
BseNI ACTGG 3 cut(s) 169, 193, 382
BseSI GKGCMC 1 cut(s) 406
BseXI GCAGC 2 cut(s) 508, 933
BsgI GTGCAG 1 cut(s) 1000
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 3 cut(s) 264, 406, 1020
BsiSI CCGG 3 cut(s) 225, 233, 989
BslFI GGGAC 1 cut(s) 1022
BslI CCNNNNNNNGG 3 cut(s) 209, 550, 592
BsmAI GTCTC 3 cut(s) 25, 35, 383
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 1022
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 1 cut(s) 240
Bsp1286I GDGCHC 4 cut(s) 264, 406, 657, 1020
Bsp13I TCCGGA 1 cut(s) 988
Bsp143I GATC 6 cut(s) 122, 213, 296, 794, 814, 881
Bsp19I CCATGG 1 cut(s) 657
BspACI CCGC 6 cut(s) 94, 100, 174, 203, 241, 563
BspANI GGCC 1 cut(s) 240
BspDI ATCGAT 1 cut(s) 575
BspEI TCCGGA 1 cut(s) 988
BspFNI CGCG 1 cut(s) 258
BspMI ACCTGC 2 cut(s) 716, 867
BspPI GGATC 2 cut(s) 221, 822
BsrDI GCAATG 1 cut(s) 1075
BsrFI RCCGGY 1 cut(s) 232
BsrI ACTGG 3 cut(s) 169, 193, 382
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 657
BssMI GATC 6 cut(s) 122, 213, 296, 794, 814, 881
BssNAI GTATAC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 931
BssT1I CCWWGG 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 462
Bst2BI CACGAG 1 cut(s) 931
Bst4CI ACNGT 1 cut(s) 976
Bst6I CTCTTC 2 cut(s) 324, 1073
BstC8I GCNNGC 6 cut(s) 234, 238, 260, 672, 1036, 1040
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 657
BstF5I GGATG 1 cut(s) 668
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 6 cut(s) 125, 216, 299, 797, 817, 884
BstMAI GTCTC 3 cut(s) 25, 35, 383
BstMBI GATC 6 cut(s) 122, 213, 296, 794, 814, 881
BstMWI GCNNNNNNNGC 2 cut(s) 108, 1024
BstNSI RCATGY 1 cut(s) 1042
BstSCI CCNGG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 508, 933
BstV2I GAAGAC 1 cut(s) 1055
BstX2I RGATCY 3 cut(s) 122, 296, 814
BstYI RGATCY 3 cut(s) 122, 296, 814
BstZ17I GTATAC 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 575
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 657
BtsCI GGATG 1 cut(s) 668
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 4 cut(s) 264, 715, 893, 981
BveI ACCTGC 2 cut(s) 716, 867
Cac8I GCNNGC 6 cut(s) 234, 238, 260, 672, 1036, 1040
Cfr10I RCCGGY 1 cut(s) 232
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 3 cut(s) 65, 305, 970
CspCI CAANNNNNGTGG 2 cut(s) 559, 594
CviAII CATG 7 cut(s) 24, 113, 412, 658, 903, 1012, 1039
CviQI GTAC 3 cut(s) 65, 305, 970
DdeI CTNAG 1 cut(s) 344
DpnI GATC 6 cut(s) 124, 215, 298, 796, 816, 883
DpnII GATC 6 cut(s) 122, 213, 296, 794, 814, 881
DraI TTTAAA 1 cut(s) 774
DraIII CACNNNGTG 2 cut(s) 506, 978
Eam1104I CTCTTC 2 cut(s) 324, 1073
EarI CTCTTC 2 cut(s) 324, 1073
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 657
EcoT22I ATGCAT 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 657
ErhI CCWWGG 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 7 cut(s) 27, 116, 415, 661, 906, 1015, 1042
FaqI GGGAC 1 cut(s) 1022
FatI CATG 7 cut(s) 23, 112, 411, 657, 902, 1011, 1038
FauNDI CATATG 1 cut(s) 367
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 5 cut(s) 175, 203, 241, 522, 922
FokI GGATG 1 cut(s) 675
FriOI GRGCYC 1 cut(s) 657
Fsp4HI GCNGC 5 cut(s) 175, 203, 241, 522, 922
FspBI CTAG 3 cut(s) 302, 443, 503
GluI GCNGC 5 cut(s) 175, 203, 241, 522, 922
HaeIII GGCC 1 cut(s) 240
HapII CCGG 3 cut(s) 225, 233, 989
Hin1II CATG 7 cut(s) 27, 116, 415, 661, 906, 1015, 1042
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 6 cut(s) 149, 479, 547, 735, 778, 889
HpaII CCGG 3 cut(s) 225, 233, 989
HphI GGTGA 4 cut(s) 367, 409, 607, 928
Hpy166II GTNNAC 9 cut(s) 59, 358, 404, 462, 570, 583, 598, 946, 972
Hpy188I TCNGA 5 cut(s) 88, 250, 702, 783, 886
Hpy188III TCNNGA 3 cut(s) 551, 732, 989
Hpy8I GTNNAC 9 cut(s) 59, 358, 404, 462, 570, 583, 598, 946, 972
HpyCH4III ACNGT 1 cut(s) 976
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 1024
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 7 cut(s) 27, 116, 415, 661, 906, 1015, 1042
Kpn2I TCCGGA 1 cut(s) 988
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 6 cut(s) 122, 213, 296, 794, 814, 881
LmnI GCTCC 3 cut(s) 4, 959, 1015
Lsp1109I GCAGC 2 cut(s) 508, 933
LweI GCATC 1 cut(s) 888
MaeI CTAG 3 cut(s) 302, 443, 503
MaeIII GTNAC 3 cut(s) 470, 640, 676
MalI GATC 6 cut(s) 124, 215, 298, 796, 816, 883
MboI GATC 6 cut(s) 122, 213, 296, 794, 814, 881
MboII GAAGA 7 cut(s) 29, 341, 461, 684, 779, 1055, 1060
MflI RGATCY 3 cut(s) 122, 296, 814
MhlI GDGCHC 4 cut(s) 264, 406, 657, 1020
MluCI AATT 5 cut(s) 314, 455, 632, 703, 871
MlyI GAGTC 2 cut(s) 473, 556
MmeI TCCRAC 3 cut(s) 111, 460, 868
MnlI CCTC 2 cut(s) 94, 365
Mph1103I ATGCAT 1 cut(s) 829
MroI TCCGGA 1 cut(s) 988
MroNI GCCGGC 1 cut(s) 232
MseI TTAA 3 cut(s) 534, 773, 1083
MspA1I CMGCKG 2 cut(s) 174, 563
MspI CCGG 3 cut(s) 225, 233, 989
MspR9I CCNGG 1 cut(s) 225
Mva1269I GAATGC 1 cut(s) 727
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 108, 1024
NaeI GCCGGC 1 cut(s) 234
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 657
NdeI CATATG 1 cut(s) 367
NdeII GATC 6 cut(s) 122, 213, 296, 794, 814, 881
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 7 cut(s) 27, 116, 415, 661, 906, 1015, 1042
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 1 cut(s) 829
NspI RCATGY 1 cut(s) 1042
PaeI GCATGC 1 cut(s) 1042
PaqCI CACCTGC 1 cut(s) 867
PcsI WCGNNNNNNNCGW 1 cut(s) 1077
PctI GAATGC 1 cut(s) 727
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 149, 735, 778, 889
PflMI CCANNNNNTGG 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 5 cut(s) 176, 204, 242, 523, 923
PleI GAGTC 2 cut(s) 473, 555
PpsI GAGTC 2 cut(s) 473, 555
PsuI RGATCY 3 cut(s) 122, 296, 814
RsaI GTAC 3 cut(s) 66, 306, 971
RsaNI GTAC 3 cut(s) 65, 305, 970
SaqAI TTAA 3 cut(s) 534, 773, 1083
SatI GCNGC 5 cut(s) 175, 203, 241, 522, 922
Sau3AI GATC 6 cut(s) 122, 213, 296, 794, 814, 881
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 2 cut(s) 473, 556
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 4 cut(s) 264, 406, 657, 1020
SfaNI GCATC 1 cut(s) 888
SpeI ACTAGT 1 cut(s) 442
SphI GCATGC 1 cut(s) 1042
Sse9I AATT 5 cut(s) 314, 455, 632, 703, 871
SsiI CCGC 6 cut(s) 94, 100, 174, 203, 241, 563
SspMI CTAG 3 cut(s) 302, 443, 503
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 1 cut(s) 976
TaqI TCGA 5 cut(s) 338, 426, 447, 575, 875
TasI AATT 5 cut(s) 314, 455, 632, 703, 871
TatI WGTACW 2 cut(s) 64, 969
TauI GCSGC 3 cut(s) 177, 205, 243
TfiI GAWTC 4 cut(s) 149, 735, 778, 889
Tru1I TTAA 3 cut(s) 534, 773, 1083
Tru9I TTAA 3 cut(s) 534, 773, 1083
TscAI CASTG 4 cut(s) 271, 715, 900, 981
TseFI GTSAC 1 cut(s) 470
TseI GCWGC 2 cut(s) 521, 921
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 59, 734
TspGWI ACGGA 1 cut(s) 475
TspRI CASTG 4 cut(s) 271, 715, 900, 981
Van91I CCANNNNNTGG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 402
XapI RAATTY 1 cut(s) 871
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 3 cut(s) 302, 443, 503
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.