AT5G23770

agenet domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8014320 .. 8016913
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G23770.1

Sequence Viewer

Length: 1200 bp
ATGTTTAGTCCTGGAACAATGGTGGAAGTGAGTTCTAAGATAAATGAAGGTGAAGTCGTTTGGGTTCCTTCAATGGTTATTAAAGAGTTTAAAGAGGATGATGAGTATAAATATATTGTCAAGGATAAGTCCTTTAGCTGCGAGGGAAAAAAGGCAAGACCCAACAAAACCGTTGATTTGTCTAGTCTTAGGCCTATACCAGTATCAGTTGACGAGTATCAGTTGGAGGAAAACGTAGAGGTGTTTCTTGATGGTATGGGGTGGCGTCATGGACGAGTGATGGGAAGTCAAGAGCGAGCGATAGGAACACTCTCTCAGAAATGGTATTTTGTGCGTTTGGAATCTACAAAGAAGCAATTAACGTTCAAGCAGTCGGATCTTAGGCCTTTGAAGGTGTGGGAAGATGGCGTTTGGAAGGTGTTGCAGACAAGGGAATTGTCGTTTACTCAGGGATCAGGAGATAAGACCGGTGATTCTGTGAGGAATGAGGCTGGAACTCAAAGAAAGGCACTCTCCAAGAAGACACTTCCAAGGAATCAGAATGGCTCGGGAAACGATTCAACGCTAGAGAATGAAAATAGCGAAGATAACAATCGAAAGAGGAAAAGAGAAGAAAACCTTGGTTGTGTTGCTAGTGTTGAGCAAGACAAACCAAAGGATACAACAATGGTTTTACCCTTTGAGAAGAAGTTACGAATTTGGGAGACACTAGAATCAATGGAGGTGTTTAAAACAGTCCCACAGAGTCCTCATTTCAGCCCATTATTGGTGGAGAGTAGAGAAGACTCCCGTGAAATGTCTGCGGTTGGTATGATGCTTACCTTTTTTGGTTTACTTGATGAAGTCAAAGCTCTGCAACACAACGATCCCATAAGCTTTTTTATAAGCCTCACTAATTCTTTTGCCGAGTTAGAGAAACACGGGTTCAATGTAAAAGCACCTCAGTCACGGATCAATAAGCTGTTGTCTCTCAGAGATAGACAATCAAAGAAAACAGAGGAACTCAAAGATGCCGAGAAAGTGACCGCAGAGAAAGAGAGCGTAAAAGCTGAGAACAAACGCAAGATTCTTGAGCTGCAAAGGCTAAATGAAGAGATGGACAAAGAGATAGCTCAAAGTAAGTCATGTGCAGCAAAGATTGTCCAACAGCTCGATGATGTGAAGCTTGAGTTTCTGGCAACAGCATCAGCTCCATGGTAA

Protein Analysis

399

Amino Acids

45.61

Weight (kDa)

6.54

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 5 - 67 2.9e-11 Agenet domain
DUF724 PF05266 224 - 398 4.3e-64 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 884
AciI CCGC 2 cut(s) 803, 1026
AclI AACGTT 1 cut(s) 362
AclWI GGATC 4 cut(s) 384, 460, 860, 959
AcsI RAATTY 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 766
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 5 cut(s) 72, 367, 391, 561, 928
AjnI CCWGG 1 cut(s) 10
AjuI GAANNNNNNNTTGG 2 cut(s) 603, 635
Alw26I GTCTC 2 cut(s) 698, 972
AlwI GGATC 4 cut(s) 384, 460, 860, 959
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 2 cut(s) 191, 383
ApeKI GCWGC 3 cut(s) 138, 1075, 1130
ApoI RAATTY 1 cut(s) 696
AsiGI ACCGGT 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 62, 482
AvaI CYCGRG 1 cut(s) 547
BbsI GAAGAC 2 cut(s) 527, 789
BbvI GCAGC 3 cut(s) 125, 1062, 1142
BccI CCATC 4 cut(s) 245, 274, 398, 1090
BciT130I CCWGG 1 cut(s) 12
BciVI GTATCC 1 cut(s) 652
BcoDI GTCTC 2 cut(s) 698, 972
BfaI CTAG 4 cut(s) 183, 566, 633, 710
BfuI GTATCC 1 cut(s) 652
BisI GCNGC 3 cut(s) 139, 1076, 1131
BlsI GCNGC 3 cut(s) 140, 1077, 1132
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 547
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 3 cut(s) 804, 1000, 1193
BpiI GAAGAC 2 cut(s) 527, 789
BpuEI CTTGAG 2 cut(s) 1091, 1187
BsaBI GATNNNNATC 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 530, 619, 1193
BsaWI WCCGGW 1 cut(s) 467
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 591
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 530, 619, 1193
BseGI GGATG 1 cut(s) 103
BseJI GATNNNNATC 1 cut(s) 591
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMII CTCAG 5 cut(s) 329, 461, 956, 985, 1041
BseNI ACTGG 1 cut(s) 200
BseXI GCAGC 3 cut(s) 125, 1062, 1142
BsgI GTGCAG 1 cut(s) 1149
BshFI GGCC 2 cut(s) 193, 385
BshTI ACCGGT 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 766
BsmAI GTCTC 2 cut(s) 698, 972
BsmFI GGGAC 1 cut(s) 722
BsnI GGCC 2 cut(s) 193, 385
BsoBI CYCGRG 1 cut(s) 547
Bsp143I GATC 4 cut(s) 376, 452, 865, 951
Bsp19I CCATGG 1 cut(s) 1193
BspACI CCGC 2 cut(s) 803, 1026
BspANI GGCC 2 cut(s) 193, 385
BspCNI CTCAG 5 cut(s) 328, 460, 955, 984, 1042
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 4 cut(s) 384, 460, 860, 959
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 530, 619, 1193
BssMI GATC 4 cut(s) 376, 452, 865, 951
BssNI GRCGYC 1 cut(s) 265
BssT1I CCWWGG 3 cut(s) 530, 619, 1193
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 172, 736
Bst6I CTCTTC 1 cut(s) 1086
BstACI GRCGYC 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 8 cut(s) 36, 188, 315, 380, 447, 942, 971, 1050
BstDSI CCRYGG 1 cut(s) 1193
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 4 cut(s) 379, 455, 868, 954
BstMAI GTCTC 2 cut(s) 698, 972
BstMBI GATC 4 cut(s) 376, 452, 865, 951
BstMWI GCNNNNNNNGC 1 cut(s) 1081
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 3 cut(s) 125, 1062, 1142
BstV2I GAAGAC 2 cut(s) 527, 789
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuI GTATCC 1 cut(s) 652
BsuRI GGCC 2 cut(s) 193, 385
BtgI CCRYGG 1 cut(s) 1193
BtsCI GGATG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 467
CseI GACGC 1 cut(s) 254
CspAI ACCGGT 1 cut(s) 467
CviAII CATG 3 cut(s) 269, 1125, 1194
DdeI CTNAG 8 cut(s) 36, 188, 315, 380, 447, 942, 971, 1050
DpnI GATC 4 cut(s) 378, 454, 867, 953
DpnII GATC 4 cut(s) 376, 452, 865, 951
DraI TTTAAA 2 cut(s) 91, 730
Eam1104I CTCTTC 1 cut(s) 1086
EarI CTCTTC 1 cut(s) 1086
Eco130I CCWWGG 3 cut(s) 530, 619, 1193
Eco147I AGGCCT 2 cut(s) 193, 385
Eco88I CYCGRG 1 cut(s) 547
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 3 cut(s) 530, 619, 1193
ErhI CCWWGG 3 cut(s) 530, 619, 1193
FaeI CATG 3 cut(s) 272, 1128, 1197
FalI AAGNNNNNCTT 2 cut(s) 603, 635
FaqI GGGAC 1 cut(s) 722
FatI CATG 3 cut(s) 268, 1124, 1193
Fnu4HI GCNGC 3 cut(s) 139, 1076, 1131
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 139, 1076, 1131
FspBI CTAG 4 cut(s) 183, 566, 633, 710
GluI GCNGC 3 cut(s) 139, 1076, 1131
HaeIII GGCC 2 cut(s) 193, 385
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 265
Hin1II CATG 3 cut(s) 272, 1128, 1197
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 2 cut(s) 874, 1163
HinfI GANTC 8 cut(s) 341, 473, 535, 557, 713, 745, 785, 1066
HpaII CCGG 1 cut(s) 468
HphI GGTGA 2 cut(s) 62, 482
Hpy166II GTNNAC 3 cut(s) 211, 444, 833
Hpy188I TCNGA 4 cut(s) 318, 376, 540, 974
Hpy188III TCNNGA 5 cut(s) 248, 290, 456, 549, 1070
Hpy8I GTNNAC 3 cut(s) 211, 444, 833
HpyAV CCTTC 4 cut(s) 41, 78, 385, 409
HpyCH4III ACNGT 2 cut(s) 172, 736
HpyCH4IV ACGT 2 cut(s) 234, 362
HpyCH4V TGCA 4 cut(s) 424, 856, 1078, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 1081
HpyF3I CTNAG 8 cut(s) 36, 188, 315, 380, 447, 942, 971, 1050
HpySE526I ACGT 2 cut(s) 234, 362
Hsp92I GRCGYC 1 cut(s) 265
Hsp92II CATG 3 cut(s) 272, 1128, 1197
Kzo9I GATC 4 cut(s) 376, 452, 865, 951
LmnI GCTCC 1 cut(s) 1195
LpnPI CCDG 7 cut(s) 24, 213, 434, 441, 477, 481, 1160
Lsp1109I GCAGC 3 cut(s) 125, 1062, 1142
LweI GCATC 3 cut(s) 804, 1000, 1193
MaeI CTAG 4 cut(s) 183, 566, 633, 710
MaeII ACGT 2 cut(s) 234, 362
MaeIII GTNAC 3 cut(s) 690, 945, 1021
MalI GATC 4 cut(s) 378, 454, 867, 953
MboI GATC 4 cut(s) 376, 452, 865, 951
MboII GAAGA 7 cut(s) 413, 532, 596, 623, 697, 794, 1103
MflI RGATCY 1 cut(s) 376
MluCI AATT 4 cut(s) 356, 434, 696, 895
MlyI GAGTC 2 cut(s) 754, 779
MmeI TCCRAC 3 cut(s) 204, 354, 1168
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 4 cut(s) 81, 90, 359, 729
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 1081
NcoI CCATGG 1 cut(s) 1193
NdeII GATC 4 cut(s) 376, 452, 865, 951
NlaIII CATG 3 cut(s) 272, 1128, 1197
NlaIV GGNNCC 1 cut(s) 66
NmeAIII GCCGAG 2 cut(s) 931, 1039
NmuCI GTSAC 2 cut(s) 945, 1021
PceI AGGCCT 2 cut(s) 193, 385
PdmI GAANNNNTTC 1 cut(s) 556
PfeI GAWTC 6 cut(s) 341, 473, 535, 557, 713, 1066
PfoI TCCNGGA 1 cut(s) 10
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 3 cut(s) 140, 1077, 1132
PleI GAGTC 2 cut(s) 753, 779
PpsI GAGTC 2 cut(s) 753, 779
PsiI TTATAA 1 cut(s) 884
Psp1406I AACGTT 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 66
PsuI RGATCY 1 cut(s) 376
SaqAI TTAA 4 cut(s) 81, 90, 359, 729
SatI GCNGC 3 cut(s) 139, 1076, 1131
Sau3AI GATC 4 cut(s) 376, 452, 865, 951
SchI GAGTC 2 cut(s) 754, 779
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 3 cut(s) 804, 1000, 1193
SmlI CTYRAG 2 cut(s) 1070, 1166
SmoI CTYRAG 2 cut(s) 1070, 1166
Sse9I AATT 4 cut(s) 356, 434, 696, 895
SseBI AGGCCT 2 cut(s) 193, 385
SsiI CCGC 2 cut(s) 803, 1026
SspMI CTAG 4 cut(s) 183, 566, 633, 710
StuI AGGCCT 2 cut(s) 193, 385
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 3 cut(s) 530, 619, 1193
TaaI ACNGT 2 cut(s) 172, 736
TaiI ACGT 2 cut(s) 237, 365
TaqI TCGA 2 cut(s) 595, 1152
TasI AATT 4 cut(s) 356, 434, 696, 895
TfiI GAWTC 6 cut(s) 341, 473, 535, 557, 713, 1066
Tru1I TTAA 4 cut(s) 81, 90, 359, 729
Tru9I TTAA 4 cut(s) 81, 90, 359, 729
TseFI GTSAC 2 cut(s) 945, 1021
TseI GCWGC 3 cut(s) 138, 1075, 1130
Tsp45I GTSAC 2 cut(s) 945, 1021
TspDTI ATGAA 4 cut(s) 60, 588, 855, 1104
TspGWI ACGGA 1 cut(s) 964
XapI RAATTY 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 556
XspI CTAG 4 cut(s) 183, 566, 633, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.