Rmu_ssc0000425.1_g000006

agenet domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000425.1
OG0000527
Physical Location & Seq
Forward (+)
47075 .. 50796
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000425.1_g000006.1.cds

Sequence Viewer

Length: 2301 bp
ctggacccaaatccaaaccagtccccattctcgcttcggaatcggaatcggaagcagaagttgctggtggtagagtatgaaactctcgtctccgacgacgacccttcgaagccgctgacggaggaaatcgaggtgggtatgctccggccgtcgccgcctgcggaggaggaggaggaggggtttgaggcaaacgacgtcgttgacgcgtttaatttggacgcgtggtggcccggggtggtgatgagtgttgtgggggacaagtacacggtggggtttaagagcccgccggatttgctggagcttgggcgcggcgagctgcggcgccattgggattggcgcggcggcgagtggactcgcgccggcaaggagatgatgatgcgattggatttcagccctggggaagatgttgaagtgaacctacacaaagaacgtgtatggtatgcttggataccggcaatttatgttggtccattagggggcaattctttcctggtccgttataagggtgcgaataatggtcatgaaaatggttttgttaaagttgtatcggactatcagattcgacctcttcctccgcagcaagaggaaagagcttttgaattgttgggaatggtggatgcatacctagatatgtgttggtgggttggagacattacaaaagttcttacaggggaaaggtatgttgtcacattaagattcacaaagcaggagaaggaattcagatcgtcagacctgaggcaccactcagaatggattggtagcaaatgggtgtctgaccctaaggcacttgaaaattctattgtcaatgaagaacgattaagatatgcaagaaacaattacagaaaatccgaagaaaaaacaccttgtcatactaagtctcaaatgaagcagttgacttgtcttgtgaagaaatcaccttacggaaataccattaagaaactcaaattatctgagctttctaatgatggtgcaacattttcaagttcaactccttcaaagaagttaaaaggggaacgctcagaagactccttatctctgtcagcattatttggcagggcaaaatcagttaaaacatccaacagaaaagggccttttgaagatggagagaagtccgagcaacaacttgtcgggcaactggatggtgaagtaaccactcccgtaaaaagaagggttggacaacgaaaatcacaagctgatagcccttcccctggtgttagacagggtacaaaggctagacgaccaaaattgcatgtcaagaagagaagtggaattgacaaagcatatgaacaaaatcttgaagatgagcatgtaattaacggaattgaatcttctgggatcggttcggagaatgaaataatggggggatcaaaggctggaagctcatgtctgctccctatggaggataaccaacaacgtaatgaagatggagcaagcagtggaataaaactgaagagaaaactgcctatgttagctgttgaacactcaaaagatccaacaacaggttctggagattcggtgagagatggccgatctgtagcttctgtagagaaagttaagctggctgtggctggaattcctgcaaagaaacttgatcatgatcaatctttattcataaaggaagggaattctgtaaaaaccgtggagggatcaataagtggaagaaaaattgaaactggagtcaaaggtgatgtggcgcaacaagacagtccaaatttgccttttgtgaaaagtatcccactttgggaaaatattgaatccatggaagtattcaaaagatttccacagaagccgcattttcatcctgtactgaaatctaaagaggtgtttcgtgagggatcggctttcggaaaaatgttagcctttagcactttggtagaccggacctccaagatacggattggtgatcctagaaacgtcattgatagcaacttggaagcgacagttgaattggaactgcacggctttgatgttgatgccataaagtgtcgtctgactggattgctagacctgaaagccaagctggaggagcttcaaaaccagtccaaagtagttgaaaccaagatcacggcgtgtagacaaaacacaatcaaggacactgaaactatctgtagaattgacaaggagatcaaggacttagaagcaaacatcaagggcttgaagaaaaaacgggccatggctgtgtcaatgtgttcggccaaagattccgagcttagcaagttgcggtcagaagcaaaagttatcagtgaaggcattcagagcatccaacatggtttcgacatactagctgctgctccattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

766

Amino Acids

85.66

Weight (kDa)

8.56

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 2 cut(s) 321, 738
AccI GTMKAC 2 cut(s) 1875, 2074
AccII CGCG 5 cut(s) 206, 221, 309, 339, 357
AclWI GGATC 6 cut(s) 1343, 1372, 1484, 1654, 1843, 1898
AcoI YGGCCR 3 cut(s) 146, 1525, 2193
AcsI RAATTY 5 cut(s) 716, 793, 1572, 1624, 1711
AcuI CTGAAG 1 cut(s) 1469
AcyI GRCGYC 2 cut(s) 195, 322
AdeI CACNNNGTG 1 cut(s) 2070
AfaI GTAC 3 cut(s) 263, 1225, 1806
AfiI CCNNNNNNNGG 7 cut(s) 476, 502, 1208, 1399, 1499, 1741, 1893
AflIII ACRYGT 3 cut(s) 204, 219, 430
AjnI CCWGG 3 cut(s) 394, 489, 1207
AjuI GAANNNNNNNTTGG 2 cut(s) 1486, 1518
Alw26I GTCTC 3 cut(s) 94, 642, 882
AlwI GGATC 6 cut(s) 1343, 1372, 1484, 1654, 1843, 1898
AlwNI CAGNNNCTG 1 cut(s) 1505
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 6 cut(s) 146, 227, 1088, 1525, 2169, 2193
ApeKI GCWGC 4 cut(s) 316, 577, 2285, 2288
ApoI RAATTY 5 cut(s) 716, 793, 1572, 1624, 1711
Asp700I GAANNNNTTC 2 cut(s) 716, 2250
AspLEI GCGC 5 cut(s) 309, 324, 339, 359, 1696
AspS9I GGNCC 7 cut(s) 4, 228, 467, 493, 1088, 1881, 2169
AsuC2I CCSGG 2 cut(s) 231, 232
AsuHPI GGTGA 6 cut(s) 250, 906, 1154, 1528, 1697, 1913
AsuII TTCGAA 1 cut(s) 107
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 4 cut(s) 4, 467, 493, 1881
AxyI CCTNAGG 2 cut(s) 734, 780
BanI GGYRCC 2 cut(s) 321, 738
BanII GRGCYC 1 cut(s) 284
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbsI GAAGAC 1 cut(s) 1029
BbvI GCAGC 4 cut(s) 303, 589, 2272, 2275
BccI CCATC 5 cut(s) 959, 1094, 1133, 1418, 1517
BceAI ACGGC 3 cut(s) 133, 1975, 2082
BciT130I CCWGG 3 cut(s) 396, 491, 1209
BciVI GTATCC 2 cut(s) 441, 1742
BclI TGATCA 2 cut(s) 1591, 1597
BcnI CCSGG 2 cut(s) 231, 232
BcoDI GTCTC 3 cut(s) 94, 642, 882
BfaI CTAG 5 cut(s) 626, 1233, 1908, 2003, 2282
BfmI CTRYAG 3 cut(s) 1533, 1542, 2107
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 2 cut(s) 441, 1742
BlpI GCTNAGC 1 cut(s) 2210
Bme1390I CCNGG 5 cut(s) 231, 232, 396, 491, 1209
Bme18I GGWCC 4 cut(s) 4, 467, 493, 1881
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 7 cut(s) 4, 228, 467, 493, 1088, 1881, 2169
BmiI GGNNCC 3 cut(s) 6, 323, 740
BmrFI CCNGG 5 cut(s) 231, 232, 396, 491, 1209
BmsI GCATC 4 cut(s) 366, 607, 1963, 2268
BpiI GAAGAC 1 cut(s) 1029
BpmI CTGGAG 4 cut(s) 317, 1527, 1695, 2042
Bpu1102I GCTNAGC 1 cut(s) 2210
Bpu14I TTCGAA 1 cut(s) 107
BpuMI CCSGG 2 cut(s) 231, 232
BsaBI GATNNNNATC 1 cut(s) 1596
BsaHI GRCGYC 2 cut(s) 195, 322
BsaJI CCNNGG 8 cut(s) 230, 231, 394, 395, 1207, 1638, 1758, 2172
BsaWI WCCGGW 1 cut(s) 1878
BsaXI ACNNNNNCTCC 6 cut(s) 164, 194, 1500, 1530, 1868, 1898
Bsc4I CCNNNNNNNGG 7 cut(s) 476, 502, 1208, 1399, 1499, 1741, 1893
Bse118I RCCGGY 2 cut(s) 359, 451
Bse1I ACTGG 5 cut(s) 19, 1140, 1678, 1999, 2038
Bse21I CCTNAGG 2 cut(s) 734, 780
Bse8I GATNNNNATC 1 cut(s) 1596
BseBI CCWGG 3 cut(s) 396, 491, 1209
BseDI CCNNGG 8 cut(s) 230, 231, 394, 395, 1207, 1638, 1758, 2172
BseGI GGATG 5 cut(s) 622, 1073, 1144, 1798, 2259
BseJI GATNNNNATC 1 cut(s) 1596
BseLI CCNNNNNNNGG 7 cut(s) 476, 502, 1208, 1399, 1499, 1741, 1893
BseMII CTCAG 4 cut(s) 725, 759, 942, 1032
BseNI ACTGG 5 cut(s) 19, 1140, 1678, 1999, 2038
BseRI GAGGAG 5 cut(s) 179, 182, 185, 188, 2039
BseX3I CGGCCG 1 cut(s) 146
BseXI GCAGC 4 cut(s) 303, 589, 2272, 2275
BsgI GTGCAG 1 cut(s) 1940
Bsh1236I CGCG 5 cut(s) 206, 221, 309, 339, 357
Bsh1285I CGRYCG 1 cut(s) 149
BshFI GGCC 6 cut(s) 148, 229, 1090, 1527, 2171, 2195
BshNI GGYRCC 2 cut(s) 321, 738
BsiEI CGRYCG 1 cut(s) 149
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 6 cut(s) 145, 231, 287, 360, 452, 1879
BslFI GGGAC 2 cut(s) 7, 269
BslI CCNNNNNNNGG 7 cut(s) 476, 502, 1208, 1399, 1499, 1741, 1893
BsmAI GTCTC 3 cut(s) 94, 642, 882
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 2 cut(s) 7, 269
BsmI GAATGC 1 cut(s) 2250
BsnI GGCC 6 cut(s) 148, 229, 1090, 1527, 2171, 2195
BsoBI CYCGRG 1 cut(s) 230
Bsp119I TTCGAA 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 284
Bsp1720I GCTNAGC 1 cut(s) 2210
Bsp19I CCATGG 2 cut(s) 1758, 2172
BspANI GGCC 6 cut(s) 148, 229, 1090, 1527, 2171, 2195
BspCNI CTCAG 4 cut(s) 726, 758, 943, 1031
BspFNI CGCG 5 cut(s) 206, 221, 309, 339, 357
BspHI TCATGA 2 cut(s) 520, 1594
BspLI GGNNCC 3 cut(s) 6, 323, 740
BspPI GGATC 6 cut(s) 1343, 1372, 1484, 1654, 1843, 1898
BspT104I TTCGAA 1 cut(s) 107
BspT107I GGYRCC 2 cut(s) 321, 738
BsrFI RCCGGY 2 cut(s) 359, 451
BsrI ACTGG 5 cut(s) 19, 1140, 1678, 1999, 2038
BssAI RCCGGY 2 cut(s) 359, 451
BssECI CCNNGG 8 cut(s) 230, 231, 394, 395, 1207, 1638, 1758, 2172
BssNI GRCGYC 2 cut(s) 195, 322
BssT1I CCWWGG 2 cut(s) 1758, 2172
Bst2UI CCWGG 3 cut(s) 396, 491, 1209
Bst4CI ACNGT 4 cut(s) 268, 1639, 1706, 1942
Bst6I CTCTTC 3 cut(s) 573, 1253, 1445
BstACI GRCGYC 2 cut(s) 195, 322
BstAPI GCANNNNNTGC 1 cut(s) 61
BstBI TTCGAA 1 cut(s) 107
BstC8I GCNNGC 6 cut(s) 159, 284, 314, 361, 1432, 1560
BstDEI CTNAG 8 cut(s) 734, 745, 780, 873, 951, 1018, 2134, 2210
BstDSI CCRYGG 3 cut(s) 1638, 1758, 2172
BstF5I GGATG 5 cut(s) 622, 1073, 1144, 1798, 2259
BstFNI CGCG 5 cut(s) 206, 221, 309, 339, 357
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 5 cut(s) 309, 324, 339, 359, 1696
BstMAI GTCTC 3 cut(s) 94, 642, 882
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 6 cut(s) 61, 154, 292, 313, 2026, 2256
BstNI CCWGG 3 cut(s) 396, 491, 1209
BstNSI RCATGY 2 cut(s) 1253, 1310
BstSCI CCNGG 5 cut(s) 229, 230, 394, 489, 1207
BstSFI CTRYAG 3 cut(s) 1533, 1542, 2107
BstUI CGCG 5 cut(s) 206, 221, 309, 339, 357
BstV1I GCAGC 4 cut(s) 303, 589, 2272, 2275
BstV2I GAAGAC 1 cut(s) 1029
BstX2I RGATCY 1 cut(s) 1489
BstYI RGATCY 1 cut(s) 1489
BstZI CGGCCG 1 cut(s) 146
Bsu36I CCTNAGG 2 cut(s) 734, 780
BsuI GTATCC 2 cut(s) 441, 1742
BsuRI GGCC 6 cut(s) 148, 229, 1090, 1527, 2171, 2195
BtgI CCRYGG 3 cut(s) 1638, 1758, 2172
BtsCI GGATG 5 cut(s) 622, 1073, 1144, 1798, 2259
BtsI GCAGTG 1 cut(s) 1441
BtsIMutI CAGTG 3 cut(s) 1441, 2094, 2248
Cac8I GCNNGC 6 cut(s) 159, 284, 314, 361, 1432, 1560
CaiI CAGNNNCTG 1 cut(s) 1505
CciI TCATGA 2 cut(s) 520, 1594
CfoI GCGC 5 cut(s) 309, 324, 339, 359, 1696
Cfr10I RCCGGY 2 cut(s) 359, 451
Cfr13I GGNCC 7 cut(s) 4, 228, 467, 493, 1088, 1881, 2169
Cfr9I CCCGGG 1 cut(s) 230
CseI GACGC 2 cut(s) 212, 227
Csp6I GTAC 3 cut(s) 262, 1224, 1805
CviAII CATG 8 cut(s) 521, 1250, 1307, 1383, 1595, 1759, 2173, 2267
CviQI GTAC 3 cut(s) 262, 1224, 1805
DdeI CTNAG 8 cut(s) 734, 745, 780, 873, 951, 1018, 2134, 2210
DinI GGCGCC 1 cut(s) 323
DraIII CACNNNGTG 1 cut(s) 2070
EaeI YGGCCR 3 cut(s) 146, 1525, 2193
EagI CGGCCG 1 cut(s) 146
Eam1104I CTCTTC 3 cut(s) 573, 1253, 1445
EarI CTCTTC 3 cut(s) 573, 1253, 1445
EclXI CGGCCG 1 cut(s) 146
Eco130I CCWWGG 2 cut(s) 1758, 2172
Eco24I GRGCYC 1 cut(s) 284
Eco47I GGWCC 4 cut(s) 4, 467, 493, 1881
Eco52I CGGCCG 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 1469
Eco81I CCTNAGG 2 cut(s) 734, 780
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 1088
EcoRI GAATTC 3 cut(s) 716, 1572, 1624
EcoRII CCWGG 3 cut(s) 394, 489, 1207
EcoT14I CCWWGG 2 cut(s) 1758, 2172
EcoT22I ATGCAT 1 cut(s) 622
EcoT38I GRGCYC 1 cut(s) 284
EgeI GGCGCC 1 cut(s) 323
EheI GGCGCC 1 cut(s) 323
ErhI CCWWGG 2 cut(s) 1758, 2172
Esp3I CGTCTC 1 cut(s) 94
FaeI CATG 8 cut(s) 524, 1253, 1310, 1386, 1598, 1762, 2176, 2270
FaqI GGGAC 2 cut(s) 7, 269
FatI CATG 8 cut(s) 520, 1249, 1306, 1382, 1594, 1758, 2172, 2266
FauI CCCGC 1 cut(s) 291
FauNDI CATATG 1 cut(s) 1282
FbaI TGATCA 2 cut(s) 1591, 1597
FblI GTMKAC 2 cut(s) 1875, 2074
FokI GGATG 5 cut(s) 629, 1060, 1151, 1785, 2246
FriOI GRGCYC 1 cut(s) 284
FspBI CTAG 5 cut(s) 626, 1233, 1908, 2003, 2282
GlaI GCGC 5 cut(s) 308, 323, 338, 358, 1695
GsuI CTGGAG 4 cut(s) 317, 1527, 1695, 2042
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 6 cut(s) 148, 229, 1090, 1527, 2171, 2195
HapII CCGG 6 cut(s) 145, 231, 287, 360, 452, 1879
HgaI GACGC 2 cut(s) 212, 227
HhaI GCGC 5 cut(s) 309, 324, 339, 359, 1696
Hin1I GRCGYC 2 cut(s) 195, 322
Hin1II CATG 8 cut(s) 524, 1253, 1310, 1386, 1598, 1762, 2176, 2270
Hin6I GCGC 5 cut(s) 307, 322, 337, 357, 1694
HinP1I GCGC 5 cut(s) 307, 322, 337, 357, 1694
HincII GTYRAC 2 cut(s) 202, 894
HindII GTYRAC 2 cut(s) 202, 894
HpaII CCGG 6 cut(s) 145, 231, 287, 360, 452, 1879
HphI GGTGA 6 cut(s) 250, 906, 1154, 1528, 1697, 1913
Hpy166II GTNNAC 7 cut(s) 202, 264, 351, 415, 894, 1876, 2075
Hpy188III TCNNGA 6 cut(s) 521, 1255, 1295, 1506, 1595, 1829
Hpy8I GTNNAC 7 cut(s) 202, 264, 351, 415, 894, 1876, 2075
Hpy99I CGWCG 5 cut(s) 98, 101, 154, 197, 200
HpyAV CCTTC 7 cut(s) 114, 706, 1002, 1161, 1212, 1613, 2240
HpyCH4III ACNGT 4 cut(s) 268, 1639, 1706, 1942
HpyCH4IV ACGT 4 cut(s) 195, 430, 1414, 1914
HpyCH4V TGCA 6 cut(s) 620, 827, 971, 1249, 1580, 1957
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 154, 292, 313, 2026, 2256
HpyF3I CTNAG 8 cut(s) 734, 745, 780, 873, 951, 1018, 2134, 2210
HpySE526I ACGT 4 cut(s) 195, 430, 1414, 1914
Hsp92I GRCGYC 2 cut(s) 195, 322
Hsp92II CATG 8 cut(s) 524, 1253, 1310, 1386, 1598, 1762, 2176, 2270
HspAI GCGC 5 cut(s) 307, 322, 337, 357, 1694
KasI GGCGCC 1 cut(s) 321
KroI GCCGGC 1 cut(s) 359
KroNI GCCGGC 1 cut(s) 361
Ksp22I TGATCA 2 cut(s) 1591, 1597
LmnI GCTCC 6 cut(s) 147, 298, 1395, 1427, 2026, 2296
Lsp1109I GCAGC 4 cut(s) 303, 589, 2272, 2275
LweI GCATC 4 cut(s) 366, 607, 1963, 2268
MaeI CTAG 5 cut(s) 626, 1233, 1908, 2003, 2282
MaeII ACGT 4 cut(s) 195, 430, 1414, 1914
MaeIII GTNAC 2 cut(s) 685, 1147
MflI RGATCY 1 cut(s) 1489
MhlI GDGCHC 1 cut(s) 284
MluI ACGCGT 2 cut(s) 204, 219
Mly113I GGCGCC 1 cut(s) 322
MlyI GAGTC 3 cut(s) 346, 1019, 1686
MmeI TCCRAC 6 cut(s) 117, 625, 1101, 1153, 1517, 2287
Mph1103I ATGCAT 1 cut(s) 622
MroNI GCCGGC 1 cut(s) 359
MroXI GAANNNNTTC 2 cut(s) 716, 2250
MslI CAYNNNNRTG 2 cut(s) 525, 2177
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 6 cut(s) 145, 231, 287, 360, 452, 1879
MspR9I CCNGG 5 cut(s) 231, 232, 396, 491, 1209
Mva1269I GAATGC 1 cut(s) 2250
MvaI CCWGG 3 cut(s) 396, 491, 1209
MvnI CGCG 5 cut(s) 206, 221, 309, 339, 357
MwoI GCNNNNNNNGC 6 cut(s) 61, 154, 292, 313, 2026, 2256
NaeI GCCGGC 1 cut(s) 361
NarI GGCGCC 1 cut(s) 322
NciI CCSGG 2 cut(s) 231, 232
NcoI CCATGG 2 cut(s) 1758, 2172
NdeI CATATG 1 cut(s) 1282
NgoMIV GCCGGC 1 cut(s) 359
NlaIII CATG 8 cut(s) 524, 1253, 1310, 1386, 1598, 1762, 2176, 2270
NlaIV GGNNCC 3 cut(s) 6, 323, 740
NmuCI GTSAC 1 cut(s) 685
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 2 cut(s) 1253, 1310
NspV TTCGAA 1 cut(s) 107
PagI TCATGA 2 cut(s) 520, 1594
PasI CCCWGGG 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 2250
PdiI GCCGGC 1 cut(s) 361
PdmI GAANNNNTTC 2 cut(s) 716, 2250
PfeI GAWTC 8 cut(s) 40, 46, 559, 696, 1325, 1511, 1754, 2201
PleI GAGTC 3 cut(s) 346, 1019, 1685
PluTI GGCGCC 1 cut(s) 325
PpsI GAGTC 3 cut(s) 346, 1019, 1685
PsiI TTATAA 1 cut(s) 501
Psp6I CCWGG 3 cut(s) 394, 489, 1207
PspGI CCWGG 3 cut(s) 394, 489, 1207
PspN4I GGNNCC 3 cut(s) 6, 323, 740
PspPI GGNCC 7 cut(s) 4, 228, 467, 493, 1088, 1881, 2169
PstNI CAGNNNCTG 1 cut(s) 1505
PsuI RGATCY 1 cut(s) 1489
RsaI GTAC 3 cut(s) 263, 1225, 1806
RsaNI GTAC 3 cut(s) 262, 1224, 1805
RseI CAYNNNNRTG 2 cut(s) 525, 2177
Sau96I GGNCC 7 cut(s) 4, 228, 467, 493, 1088, 1881, 2169
SchI GAGTC 3 cut(s) 346, 1019, 1686
ScrFI CCNGG 5 cut(s) 231, 232, 396, 491, 1209
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 4 cut(s) 366, 607, 1963, 2268
SfcI CTRYAG 3 cut(s) 1533, 1542, 2107
SfoI GGCGCC 1 cut(s) 323
SfuI TTCGAA 1 cut(s) 107
SinI GGWCC 4 cut(s) 4, 467, 493, 1881
SmaI CCCGGG 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 525, 2177
SspDI GGCGCC 1 cut(s) 321
SspI AATATT 1 cut(s) 1750
SspMI CTAG 5 cut(s) 626, 1233, 1908, 2003, 2282
StyD4I CCNGG 5 cut(s) 229, 230, 394, 489, 1207
StyI CCWWGG 2 cut(s) 1758, 2172
TaaI ACNGT 4 cut(s) 268, 1639, 1706, 1942
TaiI ACGT 4 cut(s) 198, 433, 1417, 1917
TaqI TCGA 4 cut(s) 107, 129, 562, 2274
TatI WGTACW 2 cut(s) 261, 1804
TauI GCSGC 7 cut(s) 115, 157, 312, 322, 342, 345, 1792
TfiI GAWTC 8 cut(s) 40, 46, 559, 696, 1325, 1511, 1754, 2201
TscAI CASTG 3 cut(s) 1441, 2101, 2248
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 4 cut(s) 316, 577, 2285, 2288
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 9 cut(s) 93, 537, 822, 899, 1299, 1365, 1434, 1600, 1787
TspGWI ACGGA 5 cut(s) 134, 485, 936, 1332, 1909
TspMI CCCGGG 1 cut(s) 230
TspRI CASTG 3 cut(s) 1441, 2101, 2248
VpaK11BI GGWCC 4 cut(s) 4, 467, 493, 1881
XapI RAATTY 5 cut(s) 716, 793, 1572, 1624, 1711
XceI RCATGY 2 cut(s) 1253, 1310
XmaI CCCGGG 1 cut(s) 230
XmiI GTMKAC 2 cut(s) 1875, 2074
XmnI GAANNNNTTC 2 cut(s) 716, 2250
XspI CTAG 5 cut(s) 626, 1233, 1908, 2003, 2282
ZraI GACGTC 1 cut(s) 196
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.