Rorug01G0375800

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000527
Physical Location & Seq
Reverse (-)
48974028 .. 48975261
1234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0375800.1

Sequence Viewer

Length: 330 bp
ATGAAGAGTATATTCGTTTCGCATCTTTTGAGAAACAAAAGGGTTCAGTCTTATCGTGGTGTTAGAGAAGAAGAGACCAAACTGATGCTCAGGAAGATAGAACAACAGTCCACGTATTCGTCACCAGATCACTTAGTTGCTCTAAATCTAAGCGAAATGTTTTCGACTCTCACAAATGATGTGAGCTGCAGAGTGGCTCTTGGGAGGAAGTACTGCGTTGGAGAAGATGGTAAGATATTTCAGGAGATTTTGAAGGAGTTCATGGAGTTAATGGGACGTGCGTATATCGGGGACTACATTCCATTGACGCTGCTCCACCAAGTGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

109

Amino Acids

12.66

Weight (kDa)

8.6

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 1 cut(s) 212
AgsI TTSAA 1 cut(s) 253
AjiI CACGTC 1 cut(s) 278
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw26I GTCTC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 186, 310
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 114
BbvI GCAGC 2 cut(s) 173, 297
BccI CCATC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 68
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 2 cut(s) 187, 311
BlsI GCNGC 2 cut(s) 188, 312
BmcAI AGTACT 1 cut(s) 212
BmgBI CACGTC 1 cut(s) 278
BmsI GCATC 2 cut(s) 31, 75
Bpu10I CCTNAGC 1 cut(s) 89
BsaAI YACGTR 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 68
BseMII CTCAG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 173, 297
BslFI GGGAC 2 cut(s) 288, 305
BsmAI GTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 288, 305
Bso31I GGTCTC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 102
BspMAI CTGCAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 68
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 89, 133, 149
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 173, 297
BtrI CACGTC 1 cut(s) 278
CseI GACGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 211
CviAII CATG 1 cut(s) 262
CviJI RGCY 2 cut(s) 186, 197
CviKI_1 RGCY 2 cut(s) 186, 197
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 3 cut(s) 89, 133, 149
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
DraIII CACNNNGTG 1 cut(s) 322
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 68
FaeI CATG 1 cut(s) 265
FaiI YATR 3 cut(s) 11, 263, 285
FaqI GGGAC 2 cut(s) 288, 305
FatI CATG 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 187, 311
Fsp4HI GCNGC 2 cut(s) 187, 311
GluI GCNGC 2 cut(s) 187, 311
HgaI GACGC 1 cut(s) 316
Hin1II CATG 1 cut(s) 265
HinfI GANTC 1 cut(s) 166
HphI GGTGA 1 cut(s) 114
Hpy166II GTNNAC 1 cut(s) 111
Hpy188III TCNNGA 2 cut(s) 91, 242
Hpy8I GTNNAC 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4IV ACGT 2 cut(s) 113, 277
HpyCH4V TGCA 1 cut(s) 189
HpyF3I CTNAG 3 cut(s) 89, 133, 149
HpySE526I ACGT 2 cut(s) 113, 277
Hsp92II CATG 1 cut(s) 265
Kzo9I GATC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 3 cut(s) 76, 138, 227
Lsp1109I GCAGC 2 cut(s) 173, 297
LweI GCATC 2 cut(s) 31, 75
MaeII ACGT 2 cut(s) 113, 277
MaeIII GTNAC 1 cut(s) 120
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 5 cut(s) 16, 80, 83, 106, 236
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 1 cut(s) 269
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 120
PdmI GAANNNNTTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 188, 312
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Ppu21I YACGTR 1 cut(s) 114
PstI CTGCAG 1 cut(s) 191
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 2 cut(s) 187, 311
Sau3AI GATC 1 cut(s) 127
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 1 cut(s) 160
SetI ASST 3 cut(s) 116, 188, 280
SfaNI GCATC 2 cut(s) 31, 75
SfcI CTRYAG 1 cut(s) 187
SgeI CNNG 9 cut(s) 68, 103, 124, 137, 212, 254, 274, 290, 301
TaaI ACNGT 1 cut(s) 108
TaiI ACGT 2 cut(s) 116, 280
TaqI TCGA 1 cut(s) 164
TatI WGTACW 1 cut(s) 210
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseFI GTSAC 1 cut(s) 120
TseI GCWGC 2 cut(s) 186, 310
Tsp45I GTSAC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 17, 250
XmnI GAANNNNTTC 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.