Rroxscaffold_3G00228370

Agenet domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000527
Physical Location & Seq
Reverse (-)
12785202 .. 12788059
2858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00228370.1

Sequence Viewer

Length: 471 bp
ATGACGACGATGAATTGGGGGACCTTGGGATTCCAAACCTTAGGGTTAAATTTTAACCGAGAGGAGGATCCATCATTGAGCCACCACCCAATGGAAATTTTCGCGGCTCCAAAGTCAAGGTGGGCACCAAACAAGGTGCATGGTTTCTGCTTATGTCCCGGACCCAAATCCAAACCAATCCCCATTCTCGCTTCGGAATCGGAAGCGGAGTTGCTAGTAGAGTATGAAACTCTTGTCGACGAAGACTACCCTTCAAAGCGATCGACGGAGGAAATCGAGGTGGGTTTGGTCCGGCCGTCGCCGCTTGTGGAGGAGGGGTTTGAGGTAAACGACGTTCTGGAGATTAGGCGCCGGATTAAGAGTGTTGTGGGGGAGAAGTACACGGTGGGGTTTAAGAGCCCGCCGGATTCTTTGGAGATTGAGTGCGGGGAGGCTGCGGAAGCGAGTGGAGTTGGGCCGGGAAAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet DUF724

Protein Analysis

156

Amino Acids

17.23

Weight (kDa)

4.89

Isoelectric Point (pI)

63.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000527)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03300 AT1G11420 AT1G26540 AT2G47230 AT2G47230 AT3G62300 AT3G62300 AT5G23770 AT5G23770 AT5G23780 AT5G23780 AT5G23800 AT5G23800
fragaria_vesca FvH4_7g26470 FvH4_7g26480 FvH4_7g26480 FvH4_7g26480
malus_domestica MD01G1173400.v1.1 MD01G1179100.v1.1 MD07G1101600.v1.1 MD07G1240300.v1.1
prunus_persica Prupe.2G061500_v2.0.a1 Prupe.2G061500_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G061600_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269000_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.2G269100_v2.0.a1 Prupe.3G124100_v2.0.a1
pyrus_communis pycom01g18520 pycom07g21670 pycom07g27230
rosa_chinensis RchiOBHm_Chr1g0373061 RchiOBHm_Chr1g0373071 RchiOBHm_Chr1g0373081
rosa_laevigata RLG00000001149 RLG00000016652 RLG00000026851 RLG00000026852 RLG00000026853
rosa_multiflora Rmu_co8353763.1_g000001 Rmu_sc0033012.1_g000001 Rmu_sc0033013.1_g000001 Rmu_sc0034594.1_g000001 Rmu_sc0035726.1_g000001 Rmu_ssc0000425.1_g000006 Rmu_ssc0000425.1_g000007
rosa_roxburghii Rroxscaffold_2G00111710 Rroxscaffold_3G00228370 Rroxscaffold_4G00284480 Rroxscaffold_4G00284490 Rroxscaffold_4G00284500 Rroxscaffold_5G00355260
rosa_rugosa Rorug01G0375800 Rorug01G0375900 Rorug01G0376000
rosa_samantha Rh1AG384100 Rh1AG384200 Rh1AG384300 Rh1BG348100 Rh1BG348300 Rh1BG348400 Rh1CG361500 Rh1CG361700 Rh1CG361800 Rh1DG379000 Rh1DG379200 Rh1DG379300 Rh7AG386700
rosa_wichuraiana Rw1G033870 Rw1G033880 Rw1G033890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 124, 348
AccB7I CCANNNNNTGG 1 cut(s) 91
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 104
AciI CCGC 6 cut(s) 104, 206, 302, 401, 426, 437
AclWI GGATC 2 cut(s) 62, 75
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 2 cut(s) 49, 96
AcyI GRCGYC 1 cut(s) 349
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 64, 91
AgsI TTSAA 1 cut(s) 255
AlwI GGATC 2 cut(s) 62, 75
AoxI GGCC 2 cut(s) 293, 455
ApeKI GCWGC 1 cut(s) 434
ApoI RAATTY 2 cut(s) 49, 96
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 4 cut(s) 21, 161, 289, 455
AsuC2I CCSGG 2 cut(s) 159, 459
AvaII GGWCC 3 cut(s) 21, 161, 289
AxyI CCTNAGG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 127
BamHI GGATCC 1 cut(s) 67
BanI GGYRCC 2 cut(s) 124, 348
BanII GRGCYC 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 421
BccI CCATC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 280
BcnI CCSGG 2 cut(s) 159, 459
BfaI CTAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 3 cut(s) 105, 302, 435
BlsI GCNGC 3 cut(s) 106, 303, 436
Bme1390I CCNGG 2 cut(s) 159, 459
Bme18I GGWCC 3 cut(s) 21, 161, 289
BmgT120I GGNCC 4 cut(s) 21, 161, 289, 455
BmiI GGNNCC 6 cut(s) 22, 69, 108, 126, 163, 350
BmrFI CCNGG 2 cut(s) 159, 459
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 159, 459
BsaHI GRCGYC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 24
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 407, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 91
Bse21I CCTNAGG 1 cut(s) 40
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 2 cut(s) 64, 91
BseRI GAGGAG 2 cut(s) 77, 326
BseSI GKGCMC 1 cut(s) 127
BseX3I CGGCCG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 421
Bsh1236I CGCG 1 cut(s) 104
Bsh1285I CGRYCG 2 cut(s) 263, 296
BshFI GGCC 2 cut(s) 295, 457
BshNI GGYRCC 2 cut(s) 124, 348
BsiEI CGRYCG 2 cut(s) 263, 296
BsiSI CCGG 5 cut(s) 159, 292, 352, 404, 458
BslFI GGGAC 2 cut(s) 34, 141
BslI CCNNNNNNNGG 2 cut(s) 64, 91
BsmFI GGGAC 2 cut(s) 34, 141
BsnI GGCC 2 cut(s) 295, 457
Bsp1286I GDGCHC 2 cut(s) 127, 401
Bsp143I GATC 2 cut(s) 67, 260
BspACI CCGC 6 cut(s) 104, 206, 302, 401, 426, 437
BspANI GGCC 2 cut(s) 295, 457
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 6 cut(s) 22, 69, 108, 126, 163, 350
BspPI GGATC 2 cut(s) 62, 75
BspT107I GGYRCC 2 cut(s) 124, 348
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 2 cut(s) 67, 260
BssNI GRCGYC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 385
BstACI GRCGYC 1 cut(s) 349
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 2 cut(s) 70, 263
BstMBI GATC 2 cut(s) 67, 260
BstMCI CGRYCG 2 cut(s) 263, 296
BstMWI GCNNNNNNNGC 2 cut(s) 301, 440
BstSCI CCNGG 2 cut(s) 157, 457
BstSLI GKGCMC 1 cut(s) 127
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 421
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BstZI CGGCCG 1 cut(s) 293
Bsu36I CCTNAGG 1 cut(s) 40
BsuRI GGCC 2 cut(s) 295, 457
Cac8I GCNNGC 1 cut(s) 401
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 4 cut(s) 21, 161, 289, 455
Csp6I GTAC 1 cut(s) 379
CviAII CATG 1 cut(s) 140
CviJI RGCY 6 cut(s) 81, 107, 295, 399, 434, 457
CviKI_1 RGCY 6 cut(s) 81, 107, 295, 399, 434, 457
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 1 cut(s) 40
DinI GGCGCC 1 cut(s) 350
DpnI GATC 2 cut(s) 69, 262
DpnII GATC 2 cut(s) 67, 260
EaeI YGGCCR 1 cut(s) 293
EagI CGGCCG 1 cut(s) 293
EclXI CGGCCG 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 24
Eco24I GRGCYC 1 cut(s) 401
Eco47I GGWCC 3 cut(s) 21, 161, 289
Eco52I CGGCCG 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 401
EgeI GGCGCC 1 cut(s) 350
EheI GGCGCC 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 143
FaiI YATR 3 cut(s) 141, 154, 225
FaqI GGGAC 2 cut(s) 34, 141
FatI CATG 1 cut(s) 139
FauI CCCGC 2 cut(s) 408, 419
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 3 cut(s) 105, 302, 435
FriOI GRGCYC 1 cut(s) 401
Fsp4HI GCNGC 3 cut(s) 105, 302, 435
FspBI CTAG 1 cut(s) 215
GlaI GCGC 1 cut(s) 350
GluI GCNGC 3 cut(s) 105, 302, 435
GsuI CTGGAG 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 2 cut(s) 295, 457
HapII CCGG 5 cut(s) 159, 292, 352, 404, 458
HhaI GCGC 1 cut(s) 351
Hin1I GRCGYC 1 cut(s) 349
Hin1II CATG 1 cut(s) 143
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HinfI GANTC 3 cut(s) 30, 197, 407
HpaII CCGG 5 cut(s) 159, 292, 352, 404, 458
Hpy166II GTNNAC 3 cut(s) 238, 328, 381
Hpy188I TCNGA 2 cut(s) 196, 202
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 3 cut(s) 238, 328, 381
Hpy99I CGWCG 5 cut(s) 10, 242, 268, 301, 335
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 1 cut(s) 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 440
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 349
Hsp92II CATG 1 cut(s) 143
HspAI GCGC 1 cut(s) 349
KasI GGCGCC 1 cut(s) 348
Kzo9I GATC 2 cut(s) 67, 260
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 172, 305, 323, 365, 417
Lsp1109I GCAGC 1 cut(s) 421
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 333
MalI GATC 2 cut(s) 69, 262
MboI GATC 2 cut(s) 67, 260
MboII GAAGA 1 cut(s) 254
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 127, 401
MluCI AATT 3 cut(s) 13, 49, 96
Mly113I GGCGCC 1 cut(s) 349
MnlI CCTC 9 cut(s) 55, 58, 262, 271, 304, 307, 316, 424, 459
MseI TTAA 4 cut(s) 47, 54, 357, 393
MspI CCGG 5 cut(s) 159, 292, 352, 404, 458
MspR9I CCNGG 2 cut(s) 159, 459
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 301, 440
NarI GGCGCC 1 cut(s) 349
NciI CCSGG 2 cut(s) 159, 459
NdeII GATC 2 cut(s) 67, 260
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 6 cut(s) 22, 69, 108, 126, 163, 350
PfeI GAWTC 3 cut(s) 30, 197, 407
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 3 cut(s) 106, 303, 436
Ple19I CGATCG 1 cut(s) 263
PluTI GGCGCC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 21
PspN4I GGNNCC 6 cut(s) 22, 69, 108, 126, 163, 350
PspPI GGNCC 4 cut(s) 21, 161, 289, 455
PspPPI RGGWCCY 1 cut(s) 21
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PsuI RGATCY 1 cut(s) 67
PvuI CGATCG 1 cut(s) 263
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SalI GTCGAC 1 cut(s) 236
SaqAI TTAA 4 cut(s) 47, 54, 357, 393
SatI GCNGC 3 cut(s) 105, 302, 435
Sau3AI GATC 2 cut(s) 67, 260
Sau96I GGNCC 4 cut(s) 21, 161, 289, 455
ScrFI CCNGG 2 cut(s) 159, 459
SduI GDGCHC 2 cut(s) 127, 401
SetI ASST 8 cut(s) 26, 41, 122, 138, 282, 327, 336, 470
SfoI GGCGCC 1 cut(s) 350
SinI GGWCC 3 cut(s) 21, 161, 289
Sse9I AATT 3 cut(s) 13, 49, 96
SsiI CCGC 6 cut(s) 104, 206, 302, 401, 426, 437
SspDI GGCGCC 1 cut(s) 348
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 157, 457
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 336
TaqI TCGA 3 cut(s) 237, 263, 276
TasI AATT 3 cut(s) 13, 49, 96
TatI WGTACW 1 cut(s) 378
TauI GCSGC 2 cut(s) 107, 304
TfiI GAWTC 3 cut(s) 30, 197, 407
Tru1I TTAA 4 cut(s) 47, 54, 357, 393
Tru9I TTAA 4 cut(s) 47, 54, 357, 393
TseI GCWGC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 26, 240
TspGWI ACGGA 1 cut(s) 281
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 3 cut(s) 21, 161, 289
XapI RAATTY 2 cut(s) 49, 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.